cluster # 6491

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Schistosoma mansoni
cluster # 6491 cluster # 6491 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6491#0 length = 759 sequences # 3

consensus_6491#1 length = 174 sequences # 1

consensusID : consensus_6491#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 759
fasta sequence

                              [TCGTCTTCATCACCAGATAATAAGGCATCTCCACTAGTTGGATTACGTTCTAAACGCCAACACTATTAGTCGAAATATAGTTCCTTTGCCAATGATTCAAAATACTACTAATAAAGATCAATCCGAAATTAATCCAGCTCCACCTGCTTATGAACCAGATCGACCACATTTGTCCATGATTTCGACGTCCGAGTCCAATATTCTACCGTCTTGCGATACTTCGGATGTAGAACATAATGCTTCTACCCCACCACTATCATATAAACCCAGTCCTATCACTGAACAAATCAGTTCATATGCTGTAGTCCCAAAAGCATCAGGAGTCACAGATCTTTCTTTGGATACCACTTCTCGAACTATCGATCCTCGTACTACTCTGTATATCGATCGTCTTCCTTGGAAACTTAATGATGCGGATAAAATTCGTGAGCATTTTTCCCAATTTGGTCATGTAATAAACGTCATCGCTAGATACAAGGGCATGGTAGGGTCCGCAGTGGTTGAGTTTTCTTCATCAGATGAAGCTGAAAAAGCCTATCGAAGCCCCATTCCTATGTTTTCAAATAGATTTATTC-GGATTTACACTCGTTTTCCAGAAAATTTCAAACACAATGCTCGAAGTATGACTAGTCGTTTCCCTCGTCCCAAGAGTATACTGGATCGTTTAGGAACACGGCCTGTTGCTGGAAATAACAAAATTAATTCATATTCATGGATGAGTATGACTAATGACTGTATAGGAAGTCAACAGGTTCCTGG]

[+] EMBL CD179587             [TCGTCTTCATCACCAGATAATAAGGCATCTCCACTAGTTGGATTACGTTCTAAACGCCAACACTATTAGTCGAAATATAGTTCCTTTGCCAATGATTCAAAATACTACTAATAAAGATCAATCCGAAATTAATCCAGCTCCACCTGCTTATGAACCAGATCGACCACATTTGTCCATGATTTCGACGTCCGAGTCCAATATTCTACCGTCTTGCGATACTTCGGATGTAGAACATAATGCTTCTACCCCACCACTATCATATAAACCCAGTCCTATCACTGAACAAATCAGTTCATATGCTGTAGTCCCAAAAGCATCAGGAGTCACAGATCTTTCTTTGGATACCACTTCTCGAACTATCGATCCTCGTACTACTCTGTATATCGATCGTCTTCCTTGGAAACTTAATGATGCGGATAAAATTCGTGAGCATTTTTCCCAATTTGGTCATGTAATAAACGTCATCGCTAGATACAAGGGCATGGTAGGGTCCGCAGTGGTTGAGTTTTCTTCATCAGATGAAGCTGAAAAAGCCTATCGAAGCCCCATTCCTATGTTTTCAAATAGATTTATTC GGATTTACACTCGTTTTCCAGAAAATTTCAAACACAAT                                                                                                                                                  ]
[-] EMBL CD167969             [                                                                                                                                                                                                                                                                                                                                            TTTCTTTGGATACCACTTCTCGAACTATCGATCCTCGTACTACTCTGTATATCGATCGTCTTCCTTGGAAACTTAATGATGCGGATAAAATTCGTGAGCATTTTTCCCAATTTGGTCATGTAATAAACGTCATCGCTAGATACAAGGGCATGGTAGGGTCCGCAGTGGTTGAGTTTTCTTCATCAGATGAAGCTGAAAAAGCCTATCGAAGCCCCATTCCTATGTTTTCAAATAGATTTATTC GGATTTACACTCGTTTTCCAGAAAATTTCAAACACAATGCTCGAAGTATGACTAGTCGTTTCCCTCGTCCCAAGAGTATACTGGATCGTTTAGGAACACGGCCTGTTGCTGGAAATAACAAAATTAATTCATATTCATGGATGAGTATGACTAATGACTGTATAGGAAGTCAACAGGTTCCTGG]
[+] EMBL CD125655             [                                                                                                                                                                                                                                                                                                                                                                                                                         GATGCGGATAAAATTCGTGAGCATGTTTCCCAATTTGGTCATGTAATAAACGTCATCGCTAGATACAAGGGCATGGTAGGGTCCGCAGTGGTTGAGTTTTCTTCATCAGATGAAGCTGAAAAAGCCTATCGAAGCCCCATTCCTATGTTTTCAAATAGAATTATTCGGGATTTAC                                                                                                                                                                                ]




>consensus_6491#0
TCGTCTTCATCACCAGATAATAAGGCATCTCCACTAGTTGGATTACGTTCTAAACGCCAA
CACTATTAGTCGAAATATAGTTCCTTTGCCAATGATTCAAAATACTACTAATAAAGATCA
ATCCGAAATTAATCCAGCTCCACCTGCTTATGAACCAGATCGACCACATTTGTCCATGAT
TTCGACGTCCGAGTCCAATATTCTACCGTCTTGCGATACTTCGGATGTAGAACATAATGC
TTCTACCCCACCACTATCATATAAACCCAGTCCTATCACTGAACAAATCAGTTCATATGC
TGTAGTCCCAAAAGCATCAGGAGTCACAGATCTTTCTTTGGATACCACTTCTCGAACTAT
CGATCCTCGTACTACTCTGTATATCGATCGTCTTCCTTGGAAACTTAATGATGCGGATAA
AATTCGTGAGCATTTTTCCCAATTTGGTCATGTAATAAACGTCATCGCTAGATACAAGGG
CATGGTAGGGTCCGCAGTGGTTGAGTTTTCTTCATCAGATGAAGCTGAAAAAGCCTATCG
AAGCCCCATTCCTATGTTTTCAAATAGATTTATTCGGATTTACACTCGTTTTCCAGAAAA
TTTCAAACACAATGCTCGAAGTATGACTAGTCGTTTCCCTCGTCCCAAGAGTATACTGGA
TCGTTTAGGAACACGGCCTGTTGCTGGAAATAACAAAATTAATTCATATTCATGGATGAG
TATGACTAATGACTGTATAGGAAGTCAACAGGTTCCTGG

consensusID : consensus_6491#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 174
fasta sequence

                              [TTTCCTCAGGTTCCTAACCCTTCTGTTTTGTATAATAAATCCAATTGGAAGCATCCCCGTTTACAGAATAACGTGCAACCACGTCCTAATAATTTTCGCGTATTCAACAACGCCAACACTATTAGTCGAAATATAGTTCCTTTGCCAATGATTCAAAATACTACTAATAAAGAT]

[+] EMBL CD164147             [TTTCCTCAGGTTCCTAACCCTTCTGTTTTGTATAATAAATCCAATTGGAAGCATCCCCGTTTACAGAATAACGTGCAACCACGTCCTAATAATTTTCGCGTATTCAACAACGCCAACACTATTAGTCGAAATATAGTTCCTTTGCCAATGATTCAAAATACTACTAATAAAGAT]




>consensus_6491#1
TTTCCTCAGGTTCCTAACCCTTCTGTTTTGTATAATAAATCCAATTGGAAGCATCCCCGT
TTACAGAATAACGTGCAACCACGTCCTAATAATTTTCGCGTATTCAACAACGCCAACACT
ATTAGTCGAAATATAGTTCCTTTGCCAATGATTCAAAATACTACTAATAAAGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6491#0      TCGTCTTCATCACCAGATAATAAGGCATCTCCACTAGTTGGATTACGTTCTAAACGCCAA 60
consensus_6491#1      ------------------------------------------------------------
                                                                                  

consensus_6491#0      CACTATTAGTCGAAATATAGTTCCTTTGCCAATGATTCAAAATACTACTAATAAAGATCA 120
consensus_6491#1      ------------------------------------------------------------
                                                                                  

consensus_6491#0      ATCCGAAATTAATCCAGCTCCACCTGCTTATGAACCAGATCGACCACATTTGTCCATGAT 180
consensus_6491#1      ------------------------------------------------------------
                                                                                  

consensus_6491#0      TTCGACGTCCGAGTCCAATATTCTACCGTCTTGCGATACTTCGGATGTAGAACATAATGC 240
consensus_6491#1      ------------------------------------------------------------
                                                                                  

consensus_6491#0      TTCTACCCCACCACTATCATATAAACCCAGTCCTATCACTGAACAAATCAGTTCATATGC 300
consensus_6491#1      ------------------------------------------------------------
                                                                                  

consensus_6491#0      TGTAGTCCCAAAAGCATCAGGAGTCACAGATCTTTCTTTGGATACCACTTCTCGAACTAT 360
consensus_6491#1      ----------------------------------------------TTTCCTCAGGTTCC 14
                                                                      * ***    *  

consensus_6491#0      CGATCCTCGTACTACTCTGTATATCGATCGTCTTCCTTGGAAACTTAATGATGCGGATAA 420
consensus_6491#1      TAACCCTT---CTGTTTTGTATA---ATAAATCCAATTGGAAGCATCCCCGTTTACAGAA 68
                        * ***    **  * ******   **        ****** * *     *    * **

consensus_6491#0      -AATTCGTGAGCAT-TTTTCCCAATTTGGTCATGTAATA-AACGTCATCGCTAGATACAA 477
consensus_6491#1      TAACGTGCAACCACGTCCTAATAATTTTCGCGTATTCAACAACGCCAACACTATTAGTCG 128
                       **   *  * **  *  *   *****   * * *   * **** ** * ***       

consensus_6491#0      GGGCATGGTAGGGTCCGCAGTGGTTGAGTTTTCTTCATCAGATGAAGCTGAAAAAGCCTA 537
consensus_6491#1      AAATATAGTTCCTTTGCCAATGATTCAAAATACTA---CTAATAAAGAT----------- 174
                          ** **    *   ** ** ** *   * **    *  ** *** *           

consensus_6491#0      TCGAAGCCCCATTCCTATGTTTTCAAATAGATTTATTCGGATTTACACTCGTTTTCCAGA 597
consensus_6491#1      ------------------------------------------------------------
                                                                                  

consensus_6491#0      AAATTTCAAACACAATGCTCGAAGTATGACTAGTCGTTTCCCTCGTCCCAAGAGTATACT 657
consensus_6491#1      ------------------------------------------------------------
                                                                                  

consensus_6491#0      GGATCGTTTAGGAACACGGCCTGTTGCTGGAAATAACAAAATTAATTCATATTCATGGAT 717
consensus_6491#1      ------------------------------------------------------------
                                                                                  

consensus_6491#0      GAGTATGACTAATGACTGTATAGGAAGTCAACAGGTTCCTGG 759
consensus_6491#1      ------------------------------------------