cluster # 6493

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Schistosoma mansoni
cluster # 6493 cluster # 6493 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6493#0 length = 706 sequences # 3

consensus_6493#1 length = 193 sequences # 1

consensusID : consensus_6493#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 706
fasta sequence

                              [CAAATAACAATACTTAGTACTTCTGAAGAACACATTTATGCTTGGGATAGAATAATATATTTAATGTGAATATAAATAAGTTAAACATAATGAGCGCGTCTGCAACACTCAGTCATGCCATTCGATTGAATGAATATCTCCACGTTCACCACTTCCGACCTTCTCCAAATGTTACATCTTTTTAGTTATTATATTCTTGACTCCGGAGACCATGTGATTAGGAAACAATGCCACTTCAATTGTTCATCCGAATATACTGATCGTAAATAGGACTGCAGGAAGAGAAATGTTTGAGAAATGGCAGTCTTACCTAGTTATTGATTTTTAAGTGATAATTGTCTACTTTTTTTCTCCACCACCATGGCGAAGTGTTCACCATATTTTTCAACTATCTGTTGTTCATGGATTTTCTGGCTTCTTTGAATTCGTATATACTCTTCACTCCGTCTGGGTAATGATGTTGTTGTATTATAATGGAAGTTATGCGTGTTATTTAACTTCCATCGGCTGCATGGTCTAAGTATGTGATGAGCTAATTAGTTTATTTATTTCGTAGNTGATTAAGCTTAACCTGTAAGAGTTGGTCTTTTTACATATGTCAGTAGTATATGACGACAAGGATATCGACAAGTCATAAATGTTCGACAATTGCACTCGCAAGTGCCTGCATCTAGGTCATAACACCACAGAACTGTATTTAAATCGC]

[+] EMBL CD085239             [CAAATAACAATACTTAGTACTTCTGAAGAACACATTTATGCTTGGGATAGAATAATATATTTAATGTGAATATAAATAAGTTAAACATAATGAGCGCGTCTGCAACACTCAGTCATGCCATTCGATTGAATGAATATCTCCACGTTCACCACTTCCGACCTTCTCCAAATGTTACATCTTTTTAGTTATTATATTCTTGACTCCGGAGACCATGTGATTAGGAAACAATGCCACTTCAATTGTTCATCCGAATATACTGATCGTAAATAGGACTGCAGGAAGAGAAATGTTTGAGAAATGGCAGTCTTACCTAGTTATTGATTTTTAAGTGATAATTGTCTACTTTTTTTCTCCACCACCATGGCGAAGTGTTCACCATATTTTTCAACTATCTGTTGTTCATGGATTTTCTGGCTTCTTTGAATTCGTATATACTCTTCACTCCGTCTGGGTAATGATGTTGTTGTATTATAATGGAAGTTATGCGTGTTATTTAACTTCCATCGGCTGCATGGTCTAAGTATGTGATGAGCTAATTAGTTTATTTATTTCGTAGNTGATTAAGCTTAACCTGTA                                                                                                                                  ]
[+] EMBL CD142134             [                                                                                                          ACTGAGTCATGCCATTCGATTGAATGAATATCTCCACGTTCACCACTTCCGACCTTCTCCAAGTGTTACATCTTTTTAGTTATTATATGCTTGACTCCGGAGACCATGTGATTAGGAAACAATGCCACTCCAATTATTCATCCGAATATACTGATCGTAAATAGGACTGCAGGAAGAGAAATGTTTGAGAAATGGCAGTCTTACCTAGTTATTGATTTTTAAGTGATAATTGTCTAC TTTTTTCTCGACCACCATAGCGAAGTGTCCACCATACTTCTCAACTATCTGTTGTTTATGGATTTTCTGGCTTCTTTGAATTCGTATATACTCTTCACTCAGTCTGGGTAATGATGTTGTTGTATTATAATGGAAGTTATGCGCGTTATTTAACTTCCATCGGCTGCATGGTCTAAGTATGTGATGAGCTAATTAGTTTA                                                                                                                                                                  ]
[+] EMBL CD133597             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TTGTATTATAATGGAAGTTATGCGTGTTATTTAACTTCCATCGGCTGCATGGTCTAAGTATGTGATGAGCTAATTAGTTTATTTATTTCGTAGTTGATTAAGCTT ACCTGTAAGAGTTGGTCTTTTTACATATGTCAGTAGTATATGACGACAAGGATATCGACAAGTCATAAATGTTCGACAATTGCACTCGCAAGTGCCTGCATCTAGGTCATAACACCACAGAACTGTATTTAAATCGC]




>consensus_6493#0
CAAATAACAATACTTAGTACTTCTGAAGAACACATTTATGCTTGGGATAGAATAATATAT
TTAATGTGAATATAAATAAGTTAAACATAATGAGCGCGTCTGCAACACTCAGTCATGCCA
TTCGATTGAATGAATATCTCCACGTTCACCACTTCCGACCTTCTCCAAATGTTACATCTT
TTTAGTTATTATATTCTTGACTCCGGAGACCATGTGATTAGGAAACAATGCCACTTCAAT
TGTTCATCCGAATATACTGATCGTAAATAGGACTGCAGGAAGAGAAATGTTTGAGAAATG
GCAGTCTTACCTAGTTATTGATTTTTAAGTGATAATTGTCTACTTTTTTTCTCCACCACC
ATGGCGAAGTGTTCACCATATTTTTCAACTATCTGTTGTTCATGGATTTTCTGGCTTCTT
TGAATTCGTATATACTCTTCACTCCGTCTGGGTAATGATGTTGTTGTATTATAATGGAAG
TTATGCGTGTTATTTAACTTCCATCGGCTGCATGGTCTAAGTATGTGATGAGCTAATTAG
TTTATTTATTTCGTAGNTGATTAAGCTTAACCTGTAAGAGTTGGTCTTTTTACATATGTC
AGTAGTATATGACGACAAGGATATCGACAAGTCATAAATGTTCGACAATTGCACTCGCAA
GTGCCTGCATCTAGGTCATAACACCACAGAACTGTATTTAAATCGC

consensusID : consensus_6493#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 193
fasta sequence

                              [GTATGTGATGAGCTGTAAGAGTTGGTCTTTTTACATATGTCAGTAGTATATGACGACAAGGATATCGACAAGTCATAAATGTTCGACAATTGCACTCGCAAGTGCCTGCATCTAGTTCATAACACCACAAAACTGTATTTAAATCGCATGTCCTTCAGCAGTTTATTTTTGGAACTCCTTAAACACACCATCG]

[-] EMBL CD194644             [GTATGTGATGAGCTGTAAGAGTTGGTCTTTTTACATATGTCAGTAGTATATGACGACAAGGATATCGACAAGTCATAAATGTTCGACAATTGCACTCGCAAGTGCCTGCATCTAGTTCATAACACCACAAAACTGTATTTAAATCGCATGTCCTTCAGCAGTTTATTTTTGGAACTCCTTAAACACACCATCG]




>consensus_6493#1
GTATGTGATGAGCTGTAAGAGTTGGTCTTTTTACATATGTCAGTAGTATATGACGACAAG
GATATCGACAAGTCATAAATGTTCGACAATTGCACTCGCAAGTGCCTGCATCTAGTTCAT
AACACCACAAAACTGTATTTAAATCGCATGTCCTTCAGCAGTTTATTTTTGGAACTCCTT
AAACACACCATCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6493#0      CAAATAACAATACTTAGTACTTCTGAAGAACACATTTATGCTTGGGATAGAATAATATAT 60
consensus_6493#1      ------------------------------------------------------------
                                                                                  

consensus_6493#0      TTAATGTGAATATAAATAAGTTAAACATAATGAGCGCGTCTGCAACACTCAGTCATGCCA 120
consensus_6493#1      ------------------------------------------------------------
                                                                                  

consensus_6493#0      TTCGATTGAATGAATATCTCCACGTTCACCACTTCCGACCTTCTCCAAATGTTACATCTT 180
consensus_6493#1      ------------------------------------------------------------
                                                                                  

consensus_6493#0      TTTAGTTATTATATTCTTGACTCCGGAGACCATGTGATTAGGAAACAATGCCACTTCAAT 240
consensus_6493#1      ------------------------------------------------------------
                                                                                  

consensus_6493#0      TGTTCATCCGAATATACTGATCGTAAATAGGACTGCAGGAAGAGAAATGTTTGAGAAATG 300
consensus_6493#1      ------------------------------------------------------------
                                                                                  

consensus_6493#0      GCAGTCTTACCTAGTTATTGATTTTTAAGTGATAATTGTCTACTTTTTTTCTCCACCACC 360
consensus_6493#1      ------------------------------------------------------------
                                                                                  

consensus_6493#0      ATGGCGAAGTGTTCACCATATTTTTCAACTATCTGTTGTTCATGGATTTTCTGGCTTCTT 420
consensus_6493#1      ------------------------------------------------------------
                                                                                  

consensus_6493#0      TGAATTCGTATATACTCTTCACTCCGTCTGGGTAATGATGTTGTTGTATTATAATGGAAG 480
consensus_6493#1      ------------------------------------------------------------
                                                                                  

consensus_6493#0      TTATGCGTGTTATTTAACTTCCATCGGCTGCATGGTCTAAGTATGTGATGAGCTAATTAG 540
consensus_6493#1      ------------------------------------------------------------
                                                                                  

consensus_6493#0      TTTATTTATTTCGTAGNTGATTAAGCTTAACCTGTAAGAGTTGGTCTTTTTACATATGTC 600
consensus_6493#1      ------------GTATGTGATGAG-------CTGTAAGAGTTGGTCTTTTTACATATGTC 41
                                  ***  **** *        *****************************

consensus_6493#0      AGTAGTATATGACGACAAGGATATCGACAAGTCATAAATGTTCGACAATTGCACTCGCAA 660
consensus_6493#1      AGTAGTATATGACGACAAGGATATCGACAAGTCATAAATGTTCGACAATTGCACTCGCAA 101
                      ************************************************************

consensus_6493#0      GTGCCTGCATCTAGGTCATAACACCACAGAACTGTATTTAAATCGC-------------- 706
consensus_6493#1      GTGCCTGCATCTAGTTCATAACACCACAAAACTGTATTTAAATCGCATGTCCTTCAGCAG 161
                      ************** ************* *****************              

consensus_6493#0      --------------------------------
consensus_6493#1      TTTATTTTTGGAACTCCTTAAACACACCATCG 193