cluster # 6494

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Schistosoma mansoni
cluster # 6494 cluster # 6494 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6494#0 length = 486 sequences # 3

consensus_6494#1 length = 180 sequences # 1

consensusID : consensus_6494#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 486
fasta sequence

                              [AAGGGCAGAAGAACATGACAATATGCAAAGTATAAATGAAAATGAGAAGTCAACTAATGAAAATACTGATGATCAGCGAAATGATTCTAATTCACCCAGTAATCGTGGTGACGAACAGCCTGACGAAACTAGTAAATCAATTATAAACGATAATTCCGTTAGTCTCTCCGATAACACTTATGCTGTCAATATTGATGAACAGTTGACAACTCATGAAATTCCCCCTGAAATCGAGACAACTTTGTCAGCGTCATCATCACCGCACCAACTACCGACAGCATCTTTAGAAACATTGAGTACATGTGAGAGTCAATTATTACAAAAGGAAAATAACAGTGAAGACAAAAATGTAACTAAGTTTACAAGCGATCTTTACTTGAAAATCACCCTAGTTGGAGATATAACTCATATATTTCGTCATGCTGTTGATCGCCTCACTCAAGTCTACAGTTTTCTTTTACGTGCTGGTGTAGGCAGCTTAGACAA]

[+] EMBL CD065519             [AAGGGCAGAAGAACATGACAATATGCAAAGTATAAATGAAAATGAGAAGTCAACTAATGAAAATACTGATGATCAGCGAAATGATTCTAATTCACCCAGTAATCGTGGTGACGAACAGCCTGACGAAACTAGTAAATCAATTATAAACGATAATTCCGTTAGTCTCTCCGATAACACTTATGCTGTCAATATTGATGAACAGTTGACAACTCATGAAATTCCCCCTGAAATCGAGACAACTTTGTCAGCGTCATCATCACCGCACCAACTACCGACAGCATCTTTAGAAACATTGAGTACATGTGAGAGTCAATTATTACAAAAGGAAAATAACAGTGAAGACAAAAATGTAACTAAGTTTACAAGCGATCTTTACTTGAAAATCACCCTAGTTGGAGATATAACTCATATATTTCGTCATGCTGTTGATCGCCTCACTCAAGTCTACAGTTTTCTTTTACGTGCTGGTGTAGGCAGCTTAGACAA]
[-] EMBL CD141432             [                                                                                                      TCGTGATGACGAACAGCCTGACGAAACTAGTAAATCAATTATAANCGATAATTCCGTTAGTCTCTCCGATAACACTTATGCTGTCAATATTGATGAACAGTTGACAACTCATGAAATTCCCCCTGAAATCGAGACAACTTTGTCAGCGTCATCATCACCGCACCAACTACCGACAGCATCTTTAGAAACATTGAGTACATGTGAGAGTCAATTATTACAAAAGGAAAATAACAGTGAAGACAAAAATGTAACTAAGTTTACAAGCGATCTTTACTTGAAAATCACTCTAGTTGGAGATATAACTCATATATTTCGTCTTGCTGTTGATCGgta                                                   ]
[+] EMBL BG932734             [                                                                                                                       CTGACGAAACTAGTAAATCAATTATAAACGATAATTCCGTTAGTCTCTCCGATAACACTTATGCTGTCAATATTGATGAACAGTTGACAACTCATGAAAg                                                                                                                                                                                                                                                                           ]




>consensus_6494#0
AAGGGCAGAAGAACATGACAATATGCAAAGTATAAATGAAAATGAGAAGTCAACTAATGA
AAATACTGATGATCAGCGAAATGATTCTAATTCACCCAGTAATCGTGGTGACGAACAGCC
TGACGAAACTAGTAAATCAATTATAAACGATAATTCCGTTAGTCTCTCCGATAACACTTA
TGCTGTCAATATTGATGAACAGTTGACAACTCATGAAATTCCCCCTGAAATCGAGACAAC
TTTGTCAGCGTCATCATCACCGCACCAACTACCGACAGCATCTTTAGAAACATTGAGTAC
ATGTGAGAGTCAATTATTACAAAAGGAAAATAACAGTGAAGACAAAAATGTAACTAAGTT
TACAAGCGATCTTTACTTGAAAATCACCCTAGTTGGAGATATAACTCATATATTTCGTCA
TGCTGTTGATCGCCTCACTCAAGTCTACAGTTTTCTTTTACGTGCTGGTGTAGGCAGCTT
AGACAA

consensusID : consensus_6494#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 180
fasta sequence

                              [GGCAGAAGAACATGTCAATATGCAAAGTATAAATGAAAATGAGAAGTCAACTAATGAAAATACTGATGATCAGCGAAGTGATTCTAATTCACCCAGTAATCGTGATGACGAACAGCCTGACGAAACTAGTAAATCAATTATAACGATAAATTAAATTTATTATCCGACTCAACTTTGCAA]

[-] EMBL CD180133             [GGCAGAAGAACATGTCAATATGCAAAGTATAAATGAAAATGAGAAGTCAACTAATGAAAATACTGATGATCAGCGAAGTGATTCTAATTCACCCAGTAATCGTGATGACGAACAGCCTGACGAAACTAGTAAATCAATTATAACGATAAATTAAATTTATTATCCGACTCAACTTTGCAA]




>consensus_6494#1
GGCAGAAGAACATGTCAATATGCAAAGTATAAATGAAAATGAGAAGTCAACTAATGAAAA
TACTGATGATCAGCGAAGTGATTCTAATTCACCCAGTAATCGTGATGACGAACAGCCTGA
CGAAACTAGTAAATCAATTATAACGATAAATTAAATTTATTATCCGACTCAACTTTGCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6494#0      AAGGGCAGAAGAACATGACAATATGCAAAGTATAAATGAAAATGAGAAGTCAACTAATGA 60
consensus_6494#1      ---GGCAGAAGAACATGTCAATATGCAAAGTATAAATGAAAATGAGAAGTCAACTAATGA 57
                         ************** ******************************************

consensus_6494#0      AAATACTGATGATCAGCGAAATGATTCTAATTCACCCAGTAATCGTGGTGACGAACAGCC 120
consensus_6494#1      AAATACTGATGATCAGCGAAGTGATTCTAATTCACCCAGTAATCGTGATGACGAACAGCC 117
                      ******************** ************************** ************

consensus_6494#0      TGACGAAACTAGTAAATCAATTATAAACGATAATTCCGTTAGTCTCTCCGATAACACTTA 180
consensus_6494#1      TGACGAAACTAGTAAATCAATTATAA-CGATAAATTAAATTTATTATCCGACTCAACTT- 175
                      ************************** ****** *    *    * *****    **** 

consensus_6494#0      TGCTGTCAATATTGATGAACAGTTGACAACTCATGAAATTCCCCCTGAAATCGAGACAAC 240
consensus_6494#1      TGCAA------------------------------------------------------- 180
                      ***                                                         

consensus_6494#0      TTTGTCAGCGTCATCATCACCGCACCAACTACCGACAGCATCTTTAGAAACATTGAGTAC 300
consensus_6494#1      ------------------------------------------------------------
                                                                                  

consensus_6494#0      ATGTGAGAGTCAATTATTACAAAAGGAAAATAACAGTGAAGACAAAAATGTAACTAAGTT 360
consensus_6494#1      ------------------------------------------------------------
                                                                                  

consensus_6494#0      TACAAGCGATCTTTACTTGAAAATCACCCTAGTTGGAGATATAACTCATATATTTCGTCA 420
consensus_6494#1      ------------------------------------------------------------
                                                                                  

consensus_6494#0      TGCTGTTGATCGCCTCACTCAAGTCTACAGTTTTCTTTTACGTGCTGGTGTAGGCAGCTT 480
consensus_6494#1      ------------------------------------------------------------
                                                                                  

consensus_6494#0      AGACAA 486
consensus_6494#1      ------