These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6495#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 947 fasta sequence [ATATGACAGTGATAATATGATGATGATGGCTAGTAGTCTATCCAATCTTCGTTGTAATCAAAATTCATTGATCGACAATGAGAAGAATACTAAGTTAAGTATGGAAACATTTCAAATTGAAGAGAATTCACAAAATAAAGTGGAGTATCCGAACGATGTAAAAAATTTCAATGCTGTTAGTGATGATGAGAATAATAAAAGTTGCTAGACAAAAAACTGGACACACTGATGAAAGCAATAGATAGAATTATCAACCAAACTATTTATTGTGTACGAAACATCTTACGCAATATTTAATTCGTAACAATTATTATTCATGAAGTTCTGTATCAATGAATCTTATGATGGAATAATTGGATAATATAACACCCATCTGCATAGGATAGATGATTTTTGTTCTAAAAT--AAAATCCTACCCTCTCCCATTGAATCATTATGAATCATAACAACTACACGT-CCGACTAATATTTCATTTATTCACATCTATGTTTATGTACCCAGGTGCTATTTTTCTACTATTTAGATATCATGCCTCTTTTTCAAATTTAGGATTTCATTTTTATCCGCTTCCTCCAGTTTACATTCATTCTACAATAAAACATTTCGAAATAGAGAGAGATAACAAATCTCTGTGCATTTAAAGTCATTTTTTTGTTGCAGTGGTTCCTTTTTTTACTTGTCGCTCTATTAACCACCTATTAACATATATATAGGCAAATACTTCTTGATATGACTAACTTTACTGTGTTTGTTATTCCGATCGAATTACTTTTTCCCACATATTACAAACACACTATCATACTGATACCTTATTTGTTTGCTAACTTTGTCGCATTTTCTGTCATTGTGTGCGATGTCGTATTGTTCTCATCGCTTTTGTCTCAGGTTACGATTAAATGTGTACCGATATCCTCCTTCTGTGTAGCAACAATATGCTATCAGAAATCG] [+] EMBL CD133378 [ATATGACAGTGATAATATGATGATGATGGCTAGTAGTCTATCCAATCTTCGTTGTAATCAAAATTCATTGATCGACAATGAGAAGAATACTAAGTTAAGTATGGAAACATTTCAAATTGAAGAGAATTCACAAAATAAAGTGGAGTATCCGAACGATGTAAAAAATTTCAATGCTGTTAGTGATGATGAGAATAATAAAAGTTGCTAGACAAAAAACTGGACACACTGATGAAAGCAATAGATAGAATTATCAACCAAACTATTTATTGTGTACGAAACATCTTACGCAATATTTAATTCGTAACAATTATTATTCATGAAGTTCTGTATCAATGAATCTTATGATGGAATAATTGGATAATATAACACCCATCTGCATAGGATAGATGATTTTTGTTCTAAAAT AAAATCCTACCCTCTCCCATTGAATCATTATGAATCATAACAACTACACGT CCGACTAATATTTCATTTATTCACATCTAT ] [-] EMBL CD132821 [ CAAAATAAAGTGGAGTATCCGAACGATGTAAAAAATTTCAATGCTGTTAGTGATGATGAGAATAATAAAAGTTGCTAGACAAAAAACTGGACACACTGATGAAAGCAATAGATAGAATTATCAACCAAACTATTTATTGTGTACAAAACATCTTACGCAATATTTAATTCGTAACAATTATTATTCATGAAGTTCTGTATCAATGAATCTTATGATGGAATAATTGGATAATATAACACCCATCTGCATAGGATAGATGATTTTTGTTCTAAAAT AAAATCCTACCCTCTCCCATTGAATCATTATGAATCATAACAACTACACGT CCGACTAATATTTCATTTATTCACATCTATG ] [+] EMBL AI639542 [ TTCTAAAATGCATGATCCTACCCTCTCCCATTGAATCATTATGAATCATAACAACTACACGTGACGACTAATATTTCATTTATTCACATCTATGTTTATGTACCCAGGTGCTATTTTTCTACTATTTAGATATCATGCCTCTTTTTCAAATTTAGGATTTCATTTTTATCCGCTTCCTCCAGTTTACATTCATTCTACAATAAAACATTTCGAAATAGAGAGAGATAACAAATCTCTGTGCATTTAAAGTCATTTTTTTGTTGCAGTGGTTCCTTTTTTTACTTGTCGCTCTATTAACCACCTATTAACATATATATAGGCAAATACTTCTTGATATGACTAACTTTACTGTGTTTGTTATTCCGATCGAATTACTTTTTCCCACATATTACAAACACACTATCATACTGATACCTTATTTGTTTGCTAACTTTGTCGCATTTTCTGTCATTGTGTGCGATGTCGTATTGTTCTCATCGCTTTTGTCTCAGGTTACGATTAAATGTGTACCGATATCCTCCTTCTGTGTAGCAACAATATGCTATCAGAAATCG] consensusID : consensus_6495#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 477 fasta sequence [ATATTTCATTTATTCACATCTATGTTTATGTACCCAGGTGCTATTTTTCTACTATTTAGATATCATGCCTCTTTTTCAAATTTAGGATTTCATTTTTATCCGCTTCCTCCAGTTGACATTCATTCTACAATAAAACATTTCGAAATAGAAAAGAGATAAACAAATTTCTGTTCATTTTAAAGTCATTTTTTTGTTCAGTGGTTCCTTTTTTTACTTTTTCGCTCCTATTAACCAACCTATTAACATAATATATAGGCAAAATACTTCTTGATTATGACTAACTTTACTGTTGTTTGTTTATTTCCTCGAATTACTTTTTTCCACCATATTAACAAAACAACACTCATCCATACTGATAACCTTTATTTTGTTTTGCTAACTTTTGTTTGCCATTTTTCTGTCATTTGTGTGCGCATGTCGGTATTATTCTTCATCGCTTTTTGTCTCAGGTTACGATTAAAATGTGTAACCTGATAT] [-] EMBL CD196479 [ATATTTCATTTATTCACATCTATGTTTATGTACCCAGGTGCTATTTTTCTACTATTTAGATATCATGCCTCTTTTTCAAATTTAGGATTTCATTTTTATCCGCTTCCTCCAGTTGACATTCATTCTACAATAAAACATTTCGAAATAGAAAAGAGATAAACAAATTTCTGTTCATTTTAAAGTCATTTTTTTGTTCAGTGGTTCCTTTTTTTACTTTTTCGCTCCTATTAACCAACCTATTAACATAATATATAGGCAAAATACTTCTTGATTATGACTAACTTTACTGTTGTTTGTTTATTTCCTCGAATTACTTTTTTCCACCATATTAACAAAACAACACTCATCCATACTGATAACCTTTATTTTGTTTTGCTAACTTTTGTTTGCCATTTTTCTGTCATTTGTGTGCGCATGTCGGTATTATTCTTCATCGCTTTTTGTCTCAGGTTACGATTAAAATGTGTAACCTGATAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6495#0 ATATGACAGTGATAATATGATGATGATGGCTAGTAGTCTATCCAATCTTCGTTGTAATCA 60 consensus_6495#1 ------------------------------------------------------------ consensus_6495#0 AAATTCATTGATCGACAATGAGAAGAATACTAAGTTAAGTATGGAAACATTTCAAATTGA 120 consensus_6495#1 ------------------------------------------------------------ consensus_6495#0 AGAGAATTCACAAAATAAAGTGGAGTATCCGAACGATGTAAAAAATTTCAATGCTGTTAG 180 consensus_6495#1 ------------------------------------------------------------ consensus_6495#0 TGATGATGAGAATAATAAAAGTTGCTAGACAAAAAACTGGACACACTGATGAAAGCAATA 240 consensus_6495#1 ------------------------------------------------------------ consensus_6495#0 GATAGAATTATCAACCAAACTATTTATTGTGTACGAAACATCTTACGCAATATTTAATTC 300 consensus_6495#1 ------------------------------------------------------------ consensus_6495#0 GTAACAATTATTATTCATGAAGTTCTGTATCAATGAATCTTATGATGGAATAATTGGATA 360 consensus_6495#1 ------------------------------------------------------------ consensus_6495#0 ATATAACACCCATCTGCATAGGATAGATGATTTTTGTTCTAAAATAAAATCCTACCCTCT 420 consensus_6495#1 ------------------------------------------------------------ consensus_6495#0 CCCATTGAATCATTATGAATCATAACAACTACACGTCCGACTAATATTTCATTTATTCAC 480 consensus_6495#1 -------------------------------------------ATATTTCATTTATTCAC 17 ***************** consensus_6495#0 ATCTATGTTTATGTACCCAGGTGCTATTTTTCTACTATTTAGATATCATGCCTCTTTTTC 540 consensus_6495#1 ATCTATGTTTATGTACCCAGGTGCTATTTTTCTACTATTTAGATATCATGCCTCTTTTTC 77 ************************************************************ consensus_6495#0 AAATTTAGGATTTCATTTTTATCCGCTTCCTCCAGTTTACATTCATTCTACAATAAAACA 600 consensus_6495#1 AAATTTAGGATTTCATTTTTATCCGCTTCCTCCAGTTGACATTCATTCTACAATAAAACA 137 ************************************* ********************** consensus_6495#0 TTTCGAAATAGAGA-GAGATAA-CAAATCTCTGTGCATTT-AAAGTCATTTTTTTGTTGC 657 consensus_6495#1 TTTCGAAATAGAAAAGAGATAAACAAATTTCTGTTCATTTTAAAGTCATTTTTTTGTT-C 196 ************ * ******* ***** ***** ***** ***************** * consensus_6495#0 AGTGGTTCCTTTTTTTACTTGT-CGCTC-TATTAACCA-CCTATTAACATA-TATATAGG 713 consensus_6495#1 AGTGGTTCCTTTTTTTACTTTTTCGCTCCTATTAACCAACCTATTAACATAATATATAGG 256 ******************** * ***** ********* ************ ******** consensus_6495#0 CAAA-TACTTCTTGAT-ATGACTAACTTTACTGT-GTTTGTTATTCCGATCGAATTACTT 770 consensus_6495#1 CAAAATACTTCTTGATTATGACTAACTTTACTGTTGTTTGTTTATTTCCTCGAATTACTT 316 **** *********** ***************** ******* * *********** consensus_6495#0 TTTCCCAC-ATATTACAAACACACTAT-----CATACTGATA--CCTTATTTG--TTTGC 820 consensus_6495#1 TTTTCCACCATATTAACAAAACAACACTCATCCATACTGATAACCTTTATTTTGTTTTGC 376 *** **** ****** ** *** * ********** * ****** ***** consensus_6495#0 TAACTTTG--TCGCA--TTTTCTGTCATT-GTGTGCG-ATGTCG-TATTGTTCT-CATCG 872 consensus_6495#1 TAACTTTTGTTTGCCATTTTTCTGTCATTTGTGTGCGCATGTCGGTATTATTCTTCATCG 436 ******* * ** ************ ******* ****** **** **** ***** consensus_6495#0 CTTTT-GTCTCAGGTTACGATTAAA-TGTGTA--CCGATATCCTCCTTCTGTGTAGCAAC 928 consensus_6495#1 CTTTTTGTCTCAGGTTACGATTAAAATGTGTAACCTGATAT------------------- 477 ***** ******************* ****** * ***** consensus_6495#0 AATATGCTATCAGAAATCG 947 consensus_6495#1 ------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||