cluster # 6495

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Schistosoma mansoni
cluster # 6495 cluster # 6495 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6495#0 length = 947 sequences # 3

consensus_6495#1 length = 477 sequences # 1

consensusID : consensus_6495#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 947
fasta sequence

                              [ATATGACAGTGATAATATGATGATGATGGCTAGTAGTCTATCCAATCTTCGTTGTAATCAAAATTCATTGATCGACAATGAGAAGAATACTAAGTTAAGTATGGAAACATTTCAAATTGAAGAGAATTCACAAAATAAAGTGGAGTATCCGAACGATGTAAAAAATTTCAATGCTGTTAGTGATGATGAGAATAATAAAAGTTGCTAGACAAAAAACTGGACACACTGATGAAAGCAATAGATAGAATTATCAACCAAACTATTTATTGTGTACGAAACATCTTACGCAATATTTAATTCGTAACAATTATTATTCATGAAGTTCTGTATCAATGAATCTTATGATGGAATAATTGGATAATATAACACCCATCTGCATAGGATAGATGATTTTTGTTCTAAAAT--AAAATCCTACCCTCTCCCATTGAATCATTATGAATCATAACAACTACACGT-CCGACTAATATTTCATTTATTCACATCTATGTTTATGTACCCAGGTGCTATTTTTCTACTATTTAGATATCATGCCTCTTTTTCAAATTTAGGATTTCATTTTTATCCGCTTCCTCCAGTTTACATTCATTCTACAATAAAACATTTCGAAATAGAGAGAGATAACAAATCTCTGTGCATTTAAAGTCATTTTTTTGTTGCAGTGGTTCCTTTTTTTACTTGTCGCTCTATTAACCACCTATTAACATATATATAGGCAAATACTTCTTGATATGACTAACTTTACTGTGTTTGTTATTCCGATCGAATTACTTTTTCCCACATATTACAAACACACTATCATACTGATACCTTATTTGTTTGCTAACTTTGTCGCATTTTCTGTCATTGTGTGCGATGTCGTATTGTTCTCATCGCTTTTGTCTCAGGTTACGATTAAATGTGTACCGATATCCTCCTTCTGTGTAGCAACAATATGCTATCAGAAATCG]

[+] EMBL CD133378             [ATATGACAGTGATAATATGATGATGATGGCTAGTAGTCTATCCAATCTTCGTTGTAATCAAAATTCATTGATCGACAATGAGAAGAATACTAAGTTAAGTATGGAAACATTTCAAATTGAAGAGAATTCACAAAATAAAGTGGAGTATCCGAACGATGTAAAAAATTTCAATGCTGTTAGTGATGATGAGAATAATAAAAGTTGCTAGACAAAAAACTGGACACACTGATGAAAGCAATAGATAGAATTATCAACCAAACTATTTATTGTGTACGAAACATCTTACGCAATATTTAATTCGTAACAATTATTATTCATGAAGTTCTGTATCAATGAATCTTATGATGGAATAATTGGATAATATAACACCCATCTGCATAGGATAGATGATTTTTGTTCTAAAAT  AAAATCCTACCCTCTCCCATTGAATCATTATGAATCATAACAACTACACGT CCGACTAATATTTCATTTATTCACATCTAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CD132821             [                                                                                                                                  CAAAATAAAGTGGAGTATCCGAACGATGTAAAAAATTTCAATGCTGTTAGTGATGATGAGAATAATAAAAGTTGCTAGACAAAAAACTGGACACACTGATGAAAGCAATAGATAGAATTATCAACCAAACTATTTATTGTGTACAAAACATCTTACGCAATATTTAATTCGTAACAATTATTATTCATGAAGTTCTGTATCAATGAATCTTATGATGGAATAATTGGATAATATAACACCCATCTGCATAGGATAGATGATTTTTGTTCTAAAAT  AAAATCCTACCCTCTCCCATTGAATCATTATGAATCATAACAACTACACGT CCGACTAATATTTCATTTATTCACATCTATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AI639542             [                                                                                                                                                                                                                                                                                                                                                                                                            TTCTAAAATGCATGATCCTACCCTCTCCCATTGAATCATTATGAATCATAACAACTACACGTGACGACTAATATTTCATTTATTCACATCTATGTTTATGTACCCAGGTGCTATTTTTCTACTATTTAGATATCATGCCTCTTTTTCAAATTTAGGATTTCATTTTTATCCGCTTCCTCCAGTTTACATTCATTCTACAATAAAACATTTCGAAATAGAGAGAGATAACAAATCTCTGTGCATTTAAAGTCATTTTTTTGTTGCAGTGGTTCCTTTTTTTACTTGTCGCTCTATTAACCACCTATTAACATATATATAGGCAAATACTTCTTGATATGACTAACTTTACTGTGTTTGTTATTCCGATCGAATTACTTTTTCCCACATATTACAAACACACTATCATACTGATACCTTATTTGTTTGCTAACTTTGTCGCATTTTCTGTCATTGTGTGCGATGTCGTATTGTTCTCATCGCTTTTGTCTCAGGTTACGATTAAATGTGTACCGATATCCTCCTTCTGTGTAGCAACAATATGCTATCAGAAATCG]




>consensus_6495#0
ATATGACAGTGATAATATGATGATGATGGCTAGTAGTCTATCCAATCTTCGTTGTAATCA
AAATTCATTGATCGACAATGAGAAGAATACTAAGTTAAGTATGGAAACATTTCAAATTGA
AGAGAATTCACAAAATAAAGTGGAGTATCCGAACGATGTAAAAAATTTCAATGCTGTTAG
TGATGATGAGAATAATAAAAGTTGCTAGACAAAAAACTGGACACACTGATGAAAGCAATA
GATAGAATTATCAACCAAACTATTTATTGTGTACGAAACATCTTACGCAATATTTAATTC
GTAACAATTATTATTCATGAAGTTCTGTATCAATGAATCTTATGATGGAATAATTGGATA
ATATAACACCCATCTGCATAGGATAGATGATTTTTGTTCTAAAATAAAATCCTACCCTCT
CCCATTGAATCATTATGAATCATAACAACTACACGTCCGACTAATATTTCATTTATTCAC
ATCTATGTTTATGTACCCAGGTGCTATTTTTCTACTATTTAGATATCATGCCTCTTTTTC
AAATTTAGGATTTCATTTTTATCCGCTTCCTCCAGTTTACATTCATTCTACAATAAAACA
TTTCGAAATAGAGAGAGATAACAAATCTCTGTGCATTTAAAGTCATTTTTTTGTTGCAGT
GGTTCCTTTTTTTACTTGTCGCTCTATTAACCACCTATTAACATATATATAGGCAAATAC
TTCTTGATATGACTAACTTTACTGTGTTTGTTATTCCGATCGAATTACTTTTTCCCACAT
ATTACAAACACACTATCATACTGATACCTTATTTGTTTGCTAACTTTGTCGCATTTTCTG
TCATTGTGTGCGATGTCGTATTGTTCTCATCGCTTTTGTCTCAGGTTACGATTAAATGTG
TACCGATATCCTCCTTCTGTGTAGCAACAATATGCTATCAGAAATCG

consensusID : consensus_6495#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 477
fasta sequence

                              [ATATTTCATTTATTCACATCTATGTTTATGTACCCAGGTGCTATTTTTCTACTATTTAGATATCATGCCTCTTTTTCAAATTTAGGATTTCATTTTTATCCGCTTCCTCCAGTTGACATTCATTCTACAATAAAACATTTCGAAATAGAAAAGAGATAAACAAATTTCTGTTCATTTTAAAGTCATTTTTTTGTTCAGTGGTTCCTTTTTTTACTTTTTCGCTCCTATTAACCAACCTATTAACATAATATATAGGCAAAATACTTCTTGATTATGACTAACTTTACTGTTGTTTGTTTATTTCCTCGAATTACTTTTTTCCACCATATTAACAAAACAACACTCATCCATACTGATAACCTTTATTTTGTTTTGCTAACTTTTGTTTGCCATTTTTCTGTCATTTGTGTGCGCATGTCGGTATTATTCTTCATCGCTTTTTGTCTCAGGTTACGATTAAAATGTGTAACCTGATAT]

[-] EMBL CD196479             [ATATTTCATTTATTCACATCTATGTTTATGTACCCAGGTGCTATTTTTCTACTATTTAGATATCATGCCTCTTTTTCAAATTTAGGATTTCATTTTTATCCGCTTCCTCCAGTTGACATTCATTCTACAATAAAACATTTCGAAATAGAAAAGAGATAAACAAATTTCTGTTCATTTTAAAGTCATTTTTTTGTTCAGTGGTTCCTTTTTTTACTTTTTCGCTCCTATTAACCAACCTATTAACATAATATATAGGCAAAATACTTCTTGATTATGACTAACTTTACTGTTGTTTGTTTATTTCCTCGAATTACTTTTTTCCACCATATTAACAAAACAACACTCATCCATACTGATAACCTTTATTTTGTTTTGCTAACTTTTGTTTGCCATTTTTCTGTCATTTGTGTGCGCATGTCGGTATTATTCTTCATCGCTTTTTGTCTCAGGTTACGATTAAAATGTGTAACCTGATAT]




>consensus_6495#1
ATATTTCATTTATTCACATCTATGTTTATGTACCCAGGTGCTATTTTTCTACTATTTAGA
TATCATGCCTCTTTTTCAAATTTAGGATTTCATTTTTATCCGCTTCCTCCAGTTGACATT
CATTCTACAATAAAACATTTCGAAATAGAAAAGAGATAAACAAATTTCTGTTCATTTTAA
AGTCATTTTTTTGTTCAGTGGTTCCTTTTTTTACTTTTTCGCTCCTATTAACCAACCTAT
TAACATAATATATAGGCAAAATACTTCTTGATTATGACTAACTTTACTGTTGTTTGTTTA
TTTCCTCGAATTACTTTTTTCCACCATATTAACAAAACAACACTCATCCATACTGATAAC
CTTTATTTTGTTTTGCTAACTTTTGTTTGCCATTTTTCTGTCATTTGTGTGCGCATGTCG
GTATTATTCTTCATCGCTTTTTGTCTCAGGTTACGATTAAAATGTGTAACCTGATAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6495#0      ATATGACAGTGATAATATGATGATGATGGCTAGTAGTCTATCCAATCTTCGTTGTAATCA 60
consensus_6495#1      ------------------------------------------------------------
                                                                                  

consensus_6495#0      AAATTCATTGATCGACAATGAGAAGAATACTAAGTTAAGTATGGAAACATTTCAAATTGA 120
consensus_6495#1      ------------------------------------------------------------
                                                                                  

consensus_6495#0      AGAGAATTCACAAAATAAAGTGGAGTATCCGAACGATGTAAAAAATTTCAATGCTGTTAG 180
consensus_6495#1      ------------------------------------------------------------
                                                                                  

consensus_6495#0      TGATGATGAGAATAATAAAAGTTGCTAGACAAAAAACTGGACACACTGATGAAAGCAATA 240
consensus_6495#1      ------------------------------------------------------------
                                                                                  

consensus_6495#0      GATAGAATTATCAACCAAACTATTTATTGTGTACGAAACATCTTACGCAATATTTAATTC 300
consensus_6495#1      ------------------------------------------------------------
                                                                                  

consensus_6495#0      GTAACAATTATTATTCATGAAGTTCTGTATCAATGAATCTTATGATGGAATAATTGGATA 360
consensus_6495#1      ------------------------------------------------------------
                                                                                  

consensus_6495#0      ATATAACACCCATCTGCATAGGATAGATGATTTTTGTTCTAAAATAAAATCCTACCCTCT 420
consensus_6495#1      ------------------------------------------------------------
                                                                                  

consensus_6495#0      CCCATTGAATCATTATGAATCATAACAACTACACGTCCGACTAATATTTCATTTATTCAC 480
consensus_6495#1      -------------------------------------------ATATTTCATTTATTCAC 17
                                                                 *****************

consensus_6495#0      ATCTATGTTTATGTACCCAGGTGCTATTTTTCTACTATTTAGATATCATGCCTCTTTTTC 540
consensus_6495#1      ATCTATGTTTATGTACCCAGGTGCTATTTTTCTACTATTTAGATATCATGCCTCTTTTTC 77
                      ************************************************************

consensus_6495#0      AAATTTAGGATTTCATTTTTATCCGCTTCCTCCAGTTTACATTCATTCTACAATAAAACA 600
consensus_6495#1      AAATTTAGGATTTCATTTTTATCCGCTTCCTCCAGTTGACATTCATTCTACAATAAAACA 137
                      ************************************* **********************

consensus_6495#0      TTTCGAAATAGAGA-GAGATAA-CAAATCTCTGTGCATTT-AAAGTCATTTTTTTGTTGC 657
consensus_6495#1      TTTCGAAATAGAAAAGAGATAAACAAATTTCTGTTCATTTTAAAGTCATTTTTTTGTT-C 196
                      ************ * ******* ***** ***** ***** ***************** *

consensus_6495#0      AGTGGTTCCTTTTTTTACTTGT-CGCTC-TATTAACCA-CCTATTAACATA-TATATAGG 713
consensus_6495#1      AGTGGTTCCTTTTTTTACTTTTTCGCTCCTATTAACCAACCTATTAACATAATATATAGG 256
                      ******************** * ***** ********* ************ ********

consensus_6495#0      CAAA-TACTTCTTGAT-ATGACTAACTTTACTGT-GTTTGTTATTCCGATCGAATTACTT 770
consensus_6495#1      CAAAATACTTCTTGATTATGACTAACTTTACTGTTGTTTGTTTATTTCCTCGAATTACTT 316
                      **** *********** ***************** *******  *    ***********

consensus_6495#0      TTTCCCAC-ATATTACAAACACACTAT-----CATACTGATA--CCTTATTTG--TTTGC 820
consensus_6495#1      TTTTCCACCATATTAACAAAACAACACTCATCCATACTGATAACCTTTATTTTGTTTTGC 376
                      *** **** ******  ** ***  *      **********  * ******   *****

consensus_6495#0      TAACTTTG--TCGCA--TTTTCTGTCATT-GTGTGCG-ATGTCG-TATTGTTCT-CATCG 872
consensus_6495#1      TAACTTTTGTTTGCCATTTTTCTGTCATTTGTGTGCGCATGTCGGTATTATTCTTCATCG 436
                      *******   * **   ************ ******* ****** **** **** *****

consensus_6495#0      CTTTT-GTCTCAGGTTACGATTAAA-TGTGTA--CCGATATCCTCCTTCTGTGTAGCAAC 928
consensus_6495#1      CTTTTTGTCTCAGGTTACGATTAAAATGTGTAACCTGATAT------------------- 477
                      ***** ******************* ******  * *****                   

consensus_6495#0      AATATGCTATCAGAAATCG 947
consensus_6495#1      -------------------