cluster # 6501

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Schistosoma mansoni
cluster # 6501 cluster # 6501 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6501#0 length = 267 sequences # 3

consensus_6501#1 length = 107 sequences # 1

consensusID : consensus_6501#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 267
fasta sequence

                              [CTGTAGGCGGCCGCGAATATCNATTGATTCCCGAAACTCGCACGGAGCTCCCTGCCAGCCGCTCCGTAGACACAGTTCCTAATCAGAGTGCATTCCCTCAGAACTCCATTAACACTGGCATCATCTGGCCATACAGTAACAAGGAAATATGGCTATTTGCTCCTGTCACCACTAAAAAAAACAATTCAGGGTCTCTGTATCCGTCCTGCCGGCCTAGTCGGTGTCTCCCTGCCGGCCGTCCGACGGGTTTCGGAATCAATNGAGGTT]

[+] EMBL CD093748             [CTGTAGGCGGCCGCGAATATCNATTGATTCCCGAAACTCGCACGGAGCTCCCTGCCAGCCGCTCCGTAGACACAGTTCCTAATCAGAGTGCATTCCCTCAGAACTCCATTAACACTGGCATCATCTGGCCATACAGTAACAAGGAAATATGGCTATTTGCTCCTGTCACCACTAAAAAAAACAATTCGGGGTCTGTGTATCCGTCCTGCCGGCCTAGTCGGTGTCTC                                        ]
[-] EMBL CD093778             [                                                  CCTGCCAGCCGCTCCGTAGACTCAGTTCTTAATCAGAGTGCATTCCCTCAGAACTCCATTAACGCTGGCATCATCTGGCCATACAGTGACAAGGAAATATGGTTATTTGCTCCTGTCACCACTAAAAAAAACAATTCAGGGTGTCTGTATCCGTCCTGCCGACCGAGTCGGTGTCTCCCTGCCGGCCG                             ]
[-] EMBL CD093740             [                                                         GCCGCTCCGTAGACACAGTTCCTAATCAGAGTCCATTCCCTCAGAACTACATTAACACTGGCATCATCTGGCCATACAGTAACAAGGAAATATGGCTATTTGCTCCTGTCACCACTAAAAAAAACAATTCAGGGTCTCTGTATCCGTCCTGCCGGCCTAGTC GTGTCTCCCTGCCAGCCCTCCGACGGGTTTCGGAATCAATNGAGGTT]




>consensus_6501#0
CTGTAGGCGGCCGCGAATATCNATTGATTCCCGAAACTCGCACGGAGCTCCCTGCCAGCC
GCTCCGTAGACACAGTTCCTAATCAGAGTGCATTCCCTCAGAACTCCATTAACACTGGCA
TCATCTGGCCATACAGTAACAAGGAAATATGGCTATTTGCTCCTGTCACCACTAAAAAAA
ACAATTCAGGGTCTCTGTATCCGTCCTGCCGGCCTAGTCGGTGTCTCCCTGCCGGCCGTC
CGACGGGTTTCGGAATCAATNGAGGTT

consensusID : consensus_6501#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 107
fasta sequence

                              [CGCACGGAGCTCCCTGCCGGCCGCTCGGCCGGCACGACGGATACAGAGAGCCTGTATTCTTTCCTTTAGTGGTCACAGGAGCAAATAGCCATATTTCCTTGTTAATG]

[+] EMBL CD093736             [CGCACGGAGCTCCCTGCCGGCCGCTCGGCCGGCACGACGGATACAGAGAGCCTGTATTCTTTCCTTTAGTGGTCACAGGAGCAAATAGCCATATTTCCTTGTTAATG]




>consensus_6501#1
CGCACGGAGCTCCCTGCCGGCCGCTCGGCCGGCACGACGGATACAGAGAGCCTGTATTCT
TTCCTTTAGTGGTCACAGGAGCAAATAGCCATATTTCCTTGTTAATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6501#0      CTGTAGGCGGCCGCGAATATCNATTGATTCCCGAAACTCGCACGGAGCTCCCTGCCAGCC 60
consensus_6501#1      --------------------------------------CGCACGGAGCTCCCTGCCGGCC 22
                                                            ****************** ***

consensus_6501#0      GCTCCGTAGACACAGTTCCTAATCAGAGTGCATTCCCTCAGAACTCCATTAACACTGGCA 120
consensus_6501#1      GCTCGGCCGGCACGACGGATA--CAGAGAGCCTGTATTCTTTCCTTTAGTGGTCACAGGA 80
                      **** *  * ***      **  ***** ** *    **    **  * *       * *

consensus_6501#0      TCATCTGGCCATACAGTAACAAGGAAATATGGCTATTTGCTCCTGTCACCACTAAAAAAA 180
consensus_6501#1      GCAAATAGCCATAT--TTCCTTGTTAATG------------------------------- 107
                       **  * ******   *  *  *  ***                                

consensus_6501#0      ACAATTCAGGGTCTCTGTATCCGTCCTGCCGGCCTAGTCGGTGTCTCCCTGCCGGCCGTC 240
consensus_6501#1      ------------------------------------------------------------
                                                                                  

consensus_6501#0      CGACGGGTTTCGGAATCAATNGAGGTT 267
consensus_6501#1      ---------------------------