cluster # 6506

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Schistosoma mansoni
cluster # 6506 cluster # 6506 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6506#0 length = 576 sequences # 2

consensus_6506#1 length = 415 sequences # 2

consensusID : consensus_6506#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 576
fasta sequence

                              [AAAAAGTGAACCAAATGATGAAATCTGATTTCACTTATAATAAGTATCAGGATAATCAACATAACGACGAGGTATACCTGATAATCCTAAAAAATGTTGAGGGAAAAAAGTTAAATTCACTGCAAAAAATATAATAAAAAAGTGAGCCTTAGCAGCCCCCTCATGAAGGGTATAACCAGTTATTACAGGAAATCAATACACAAAACCAGCAAATAATGCAAATACTGCACCCATAGATAAAACATAATGAAAGTGAGCAACTACATAGTATGTGTCATGCAATATAATATCTAAAGATGAATTAGATAAAACAATTCCTGTTAATCCACCAAGTGTAAATAAAAAAATAAAACCTAAAACCCAATATATTGAGGCACTAAAGTGACAATGACTTCCATATAAAGTTATAAGTCATCTAAAAATTTTAATTCCTGTTGGGACCGCAATAATTATAGTAGCAGCAGTAAAATATGCACGAGTATCAACATCTATTCCAACTGTAAATATATGATGAGCTCATACAATAAATCCTAAAATTCCAATTGATACTATAGCATAAATCATACCTAAAGTTCC]

[+] EMBL CD144154             [AAAAAGTGAACCAAATGATGAAATCTGATTTCACTTATAATAAGTATCAGGATAATCAACATAACGACGAGGTATACCTGATAATCCTAAAAAATGTTGAGGGAAAAAAGTTAAATTCACTGCAAAAAATATAATAAAAAAGTGAGCCTTAGCAGCCCCCTCATGAAGGGTATAACCAGTTATTACAGGAAATCAATACACAAAACCAGCAAATAATGCAAATACTGCACCCATAGATAAAACATAATGAAAGTGAGCAACTACATAGTATGTGTCATGCAATATAATATCTAAAGATGAATTAGATAAAACAATTCCTGTTAATCCACCAAGTGTAAATAAAAAAATAAAACCTAAAACCCAATATATTGAGGCACTAAAGTGACAATGAC                                                                                                                                                                                        ]
[-] EMBL CD136632             [                                                                                                                                                                                                                                                                                     TGTAATATAATATCTAAAGATGAATTAGATAAAACAATTCCTGTTAATCCACCGAGTGTAAATAAAAAAATAAAACCTAAAACTCAATATATTGAAGCACTAAAATAACAATGACTTCCATATAAAGTTATAAGTCATCTAAAAATTTTAATTCCTGTTGGGACCGCAATAATTATAGTAGCAGCAGTAAAATATGCACGAGTATCAACATCTATTCCAACTGTAAATATATGATGAGCTCATACAATAAATCCTAAAATTCCAATTGATACTATAGCATAAATCATACCTAAAGTTCC]




>consensus_6506#0
AAAAAGTGAACCAAATGATGAAATCTGATTTCACTTATAATAAGTATCAGGATAATCAAC
ATAACGACGAGGTATACCTGATAATCCTAAAAAATGTTGAGGGAAAAAAGTTAAATTCAC
TGCAAAAAATATAATAAAAAAGTGAGCCTTAGCAGCCCCCTCATGAAGGGTATAACCAGT
TATTACAGGAAATCAATACACAAAACCAGCAAATAATGCAAATACTGCACCCATAGATAA
AACATAATGAAAGTGAGCAACTACATAGTATGTGTCATGCAATATAATATCTAAAGATGA
ATTAGATAAAACAATTCCTGTTAATCCACCAAGTGTAAATAAAAAAATAAAACCTAAAAC
CCAATATATTGAGGCACTAAAGTGACAATGACTTCCATATAAAGTTATAAGTCATCTAAA
AATTTTAATTCCTGTTGGGACCGCAATAATTATAGTAGCAGCAGTAAAATATGCACGAGT
ATCAACATCTATTCCAACTGTAAATATATGATGAGCTCATACAATAAATCCTAAAATTCC
AATTGATACTATAGCATAAATCATACCTAAAGTTCC

consensusID : consensus_6506#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 415
fasta sequence

                              [GCGAATTTCNATTGATTCCCGGAACCCGTACGGAGTGTAAATAAAAAAATAAAACCTAAAACTCAATATATTGAAGCACTAAAATAACAATGACTTCCATATAAAGTTATAAGTCATCTAAAAATTTTAATTCCTGTTGGGACCGCAATAATTATAGTAGCAGCATTAAAATATGCACGAGGGTCAACATCTATTCCAACTGTAAATATATGATGAGCTCATACAATAAATCCTAAAATTCCAATTGATACTATAGCATAAATCATACCTAAAGTTCCAAATGCAGGTTTTCTAACAAAATTACTTAAAATATGAGAAACTATTCCAAATCCAGGTAAAATTAAAATATATACTTCTGGATGACCAAAAAACCAAAATAAATGTTGGTATAAAATAGGATCACCTCCTCCGTGCT]

[+] EMBL CD093749             [GCGAATTTCNATTGATTCCCGGAACCCGTACGGAGTGTAAATAAAAAAATAAAACCTAAAACTCAATATATTGAAGCACTAAAATAACAATGACTTCCATATAAAGTTATAAGTCATCTAAAAATTTTAATTCCTGTTGGGACCGCAATAATTATAGTAGCAGCATTAAAATATGCACGAGGGTCAACATCTATTCCAACTGTAAATATATGATGAGCTCATACAATAAATCCTAAAATTCCAATTGATACTATAGCATAAATCATACCTAAAGTTCCAAATGCAGGTTTTCTAACAAAATTACTTAAAATATGAGAAACTATTCCAAATCCAGGTAAAATTAAAATATATACTTCTGGATGACCAAAAAACCAAAATAAATGTTGGTATAAAATA                   ]
[-] EMBL CD138822             [                                             AAAATAAAACCTAAAACTCAATATATTGAAGCACTAAAATAACAATGACTTCCATATAAAGTTATAAGTCATCTAAAAATTTTAATTCCTGTTGGGACCGCAATAATTATAGTAGCAGCAGTAAAATATGCACGAGTATCAACATCTATTCCAACTGTAAATATATGATGAGCTCATACAATAAATCCTAAAATTCCAATTGATACTATAGCATAAATCATACCTAAAGTTCCAAATGCAGGTTTTCTAACAAAATTACTTAAAATATGAGAAACTATTCCAAATCCAGGTAAAATTAAAATATATACTTCTGGATGACCAAAAAACCAAAATAAATGTTGGTATAAAATAGGATCACCTCCTCCGTGCT]




>consensus_6506#1
GCGAATTTCNATTGATTCCCGGAACCCGTACGGAGTGTAAATAAAAAAATAAAACCTAAA
ACTCAATATATTGAAGCACTAAAATAACAATGACTTCCATATAAAGTTATAAGTCATCTA
AAAATTTTAATTCCTGTTGGGACCGCAATAATTATAGTAGCAGCATTAAAATATGCACGA
GGGTCAACATCTATTCCAACTGTAAATATATGATGAGCTCATACAATAAATCCTAAAATT
CCAATTGATACTATAGCATAAATCATACCTAAAGTTCCAAATGCAGGTTTTCTAACAAAA
TTACTTAAAATATGAGAAACTATTCCAAATCCAGGTAAAATTAAAATATATACTTCTGGA
TGACCAAAAAACCAAAATAAATGTTGGTATAAAATAGGATCACCTCCTCCGTGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6506#0      AAAAAGTGAACCAAATGATGAAATCTGATTTCACTTATAATAAGTATCAGGATAATCAAC 60
consensus_6506#1      ------------------------------------------------------------
                                                                                  

consensus_6506#0      ATAACGACGAGGTATACCTGATAATCCTAAAAAATGTTGAGGGAAAAAAGTTAAATTCAC 120
consensus_6506#1      ------------------------------------------------------------
                                                                                  

consensus_6506#0      TGCAAAAAATATAATAAAAAAGTGAGCCTTAGCAGCCCCCTCATGAAGGGTATAACCAGT 180
consensus_6506#1      ------------------------------------------------------------
                                                                                  

consensus_6506#0      TATTACAGGAAATCAATACACAAAACCAGCAAATAATGCAAATACTGCACCCATAGATAA 240
consensus_6506#1      ------------------------------------------------------------
                                                                                  

consensus_6506#0      AACATAATGAAAGTGAGCAACTACATAGTATGTGTCATGCAATATAATATCTAAAGATGA 300
consensus_6506#1      --------------------------------------------------------GCGA 4
                                                                                **

consensus_6506#0      ATTAGATAAAACAATTCCTGTTAATC-CACCAAGTGTAAATAAAAAAATAAAACCTAAAA 359
consensus_6506#1      ATT---TCNATTGATTCCCGGAACCCGTACGGAGTGTAAATAAAAAAATAAAACCTAAAA 61
                      ***   *  *   ***** *  *  *  **  ****************************

consensus_6506#0      CCCAATATATTGAGGCACTAAAGTGACAATGACTTCCATATAAAGTTATAAGTCATCTAA 419
consensus_6506#1      CTCAATATATTGAAGCACTAAAATAACAATGACTTCCATATAAAGTTATAAGTCATCTAA 121
                      * *********** ******** * ***********************************

consensus_6506#0      AAATTTTAATTCCTGTTGGGACCGCAATAATTATAGTAGCAGCAGTAAAATATGCACGAG 479
consensus_6506#1      AAATTTTAATTCCTGTTGGGACCGCAATAATTATAGTAGCAGCATTAAAATATGCACGAG 181
                      ******************************************** ***************

consensus_6506#0      TATCAACATCTATTCCAACTGTAAATATATGATGAGCTCATACAATAAATCCTAAAATTC 539
consensus_6506#1      GGTCAACATCTATTCCAACTGTAAATATATGATGAGCTCATACAATAAATCCTAAAATTC 241
                        **********************************************************

consensus_6506#0      CAATTGATACTATAGCATAAATCATACCTAAAGTTCC----------------------- 576
consensus_6506#1      CAATTGATACTATAGCATAAATCATACCTAAAGTTCCAAATGCAGGTTTTCTAACAAAAT 301
                      *************************************                       

consensus_6506#0      ------------------------------------------------------------
consensus_6506#1      TACTTAAAATATGAGAAACTATTCCAAATCCAGGTAAAATTAAAATATATACTTCTGGAT 361
                                                                                  

consensus_6506#0      ------------------------------------------------------
consensus_6506#1      GACCAAAAAACCAAAATAAATGTTGGTATAAAATAGGATCACCTCCTCCGTGCT 415