cluster # 6514

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Schistosoma mansoni
cluster # 6514 cluster # 6514 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6514#0 length = 424 sequences # 3

consensus_6514#1 length = 413 sequences # 1

consensusID : consensus_6514#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 424
fasta sequence

                              [AGTGAATCAACTAGCATCTTGCTATCCTCTATCAAAAATGCTACAGAAAACTGATCTAAGAAGGATCATTGGTGCCATCTATCATATTATTGTATTGGGAATATTCATAACCATCACAGTTGTTGGCTATAAATACATCTATCCAGGTCAATCATTCAACATTATGAATTTGTTGGTACTATTCAAATATATCACATTTATTACAATGACCATGATACAAGTCTATTTCGTCAATTCTACATTACTCCTAA-TGTGTAAACAATATACGGTACACAGCTATTTCTATGTACTTTCATTTACTTATGCTTGGACGATACTTGTGATGTATTTCATTGTACTCATTGTTGATCATACTGTGGCTACCGAGAATCCAGAATTGAAGAATATGCTATTATGGTTCAATCATACATGTCATATCATTCCA]

[+] EMBL CD160916             [AGTGAATCAACTAGCATCTTGCTATCCTCTATCAAAAATGCTACAGAAAACTGATCTAAGAAGGATCATTGGTGCCATCTATCATATTATTGTATTGGGAATATTCATAACCATCACAGTTGTTGGCTATAAATACATCTATCCAGGTCAATCATTCAACATTATGAATTTGTTGGTACTATTCAAATATATCACATTTATTACAATGACCATGATACAAGTCTATTTCGTCAATTCTACATTACTCCTAA TGTGTAAACAATATACGGTACACAGCTATTTCTATGTACTTTCATTTACTTATGCTTGGACGATACTTGTGATGTATTTCATTGTACTCATTGTTGATCATACTGTGGCTACCGAGAATCCAGAATTGAAGAATATGCTATTATGGTTCAATCATACATGTCATATCATTCCA]
[-] EMBL CD155755             [ GTGAATCAACTAGCATCTTGCTATCCTCTATCAAAAATGCTACAGAAAACTGATCTAAGAAGGATCATTGGTGCCATCTATCATATTATTGTATTGGGAATATTCATAACCATCACAGTTGTTGGCTATAAATACATCTATCCAGGTCAATCATTCAACATTATGAATTTGTTGGTACTATTCAAATATATCACATTTATTACAATGACCATGATACAAGTCTATTTCGTCAAT                                                                                                                                                                                              ]
[+] EMBL CD150551             [                                                                                                                                                                                                                         tggcagataTTCTTCAATTCTACATTACTCCTAAGTGTGTAAACAATATACGGTACACAGCTATTTCTATGTACTTTCATTTACTTATGCTTGGACGATACTTGTGATGTATTTCATTGTACTCATTGTTGGTCATACTGTGGCTACCGAGAATCCAGAATTGAAGAATATGCCATTATGGTT                         ]




>consensus_6514#0
AGTGAATCAACTAGCATCTTGCTATCCTCTATCAAAAATGCTACAGAAAACTGATCTAAG
AAGGATCATTGGTGCCATCTATCATATTATTGTATTGGGAATATTCATAACCATCACAGT
TGTTGGCTATAAATACATCTATCCAGGTCAATCATTCAACATTATGAATTTGTTGGTACT
ATTCAAATATATCACATTTATTACAATGACCATGATACAAGTCTATTTCGTCAATTCTAC
ATTACTCCTAATGTGTAAACAATATACGGTACACAGCTATTTCTATGTACTTTCATTTAC
TTATGCTTGGACGATACTTGTGATGTATTTCATTGTACTCATTGTTGATCATACTGTGGC
TACCGAGAATCCAGAATTGAAGAATATGCTATTATGGTTCAATCATACATGTCATATCAT
TCCA

consensusID : consensus_6514#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 413
fasta sequence

                              [AATTCGGCAACCTAATTCTCCATCAAAAATGCTACAGAAAACTGATCTAAGAAGGATCATTGGTGCCATCTATCATATTATTGTATTGGGAATATTCATAACCATCACAGTTGTTGGCTATAAATACATCTATCCAGGTCAATCATTCAACATTATGAATTTGTTGGTACTATTCAAATATATCACATTTATTACAATGACCATGATACAAGTCTATTTCGTCAATTCTACATTACTCCTAATGTGTAAACAATATACGGTACACAGCTATTTCTATGTACTTTCATTTACTTATGCTTGGACGATACTTGTGATGTATTTCATTGTACTCATTGTTGATCAAACTGTGGCAACCGAGAACCAGAATTGAGATATCCATTATGGTCAACCATACATGTCATATCATTCAGCAG]

[+] EMBL AI740410             [AATTCGGCAACCTAATTCTCCATCAAAAATGCTACAGAAAACTGATCTAAGAAGGATCATTGGTGCCATCTATCATATTATTGTATTGGGAATATTCATAACCATCACAGTTGTTGGCTATAAATACATCTATCCAGGTCAATCATTCAACATTATGAATTTGTTGGTACTATTCAAATATATCACATTTATTACAATGACCATGATACAAGTCTATTTCGTCAATTCTACATTACTCCTAATGTGTAAACAATATACGGTACACAGCTATTTCTATGTACTTTCATTTACTTATGCTTGGACGATACTTGTGATGTATTTCATTGTACTCATTGTTGATCAAACTGTGGCAACCGAGAACCAGAATTGAGATATCCATTATGGTCAACCATACATGTCATATCATTCAGCAG]




>consensus_6514#1
AATTCGGCAACCTAATTCTCCATCAAAAATGCTACAGAAAACTGATCTAAGAAGGATCAT
TGGTGCCATCTATCATATTATTGTATTGGGAATATTCATAACCATCACAGTTGTTGGCTA
TAAATACATCTATCCAGGTCAATCATTCAACATTATGAATTTGTTGGTACTATTCAAATA
TATCACATTTATTACAATGACCATGATACAAGTCTATTTCGTCAATTCTACATTACTCCT
AATGTGTAAACAATATACGGTACACAGCTATTTCTATGTACTTTCATTTACTTATGCTTG
GACGATACTTGTGATGTATTTCATTGTACTCATTGTTGATCAAACTGTGGCAACCGAGAA
CCAGAATTGAGATATCCATTATGGTCAACCATACATGTCATATCATTCAGCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6514#0      AGTGAATCAACTAGCATCTTGCTATCCTCTATCAAAAATGCTACAGAAAACTGATCTAAG 60
consensus_6514#1      -------AATTCGGCAACCTA--ATTCTCCATCAAAAATGCTACAGAAAACTGATCTAAG 51
                              *    *** * *   ** *** ******************************

consensus_6514#0      AAGGATCATTGGTGCCATCTATCATATTATTGTATTGGGAATATTCATAACCATCACAGT 120
consensus_6514#1      AAGGATCATTGGTGCCATCTATCATATTATTGTATTGGGAATATTCATAACCATCACAGT 111
                      ************************************************************

consensus_6514#0      TGTTGGCTATAAATACATCTATCCAGGTCAATCATTCAACATTATGAATTTGTTGGTACT 180
consensus_6514#1      TGTTGGCTATAAATACATCTATCCAGGTCAATCATTCAACATTATGAATTTGTTGGTACT 171
                      ************************************************************

consensus_6514#0      ATTCAAATATATCACATTTATTACAATGACCATGATACAAGTCTATTTCGTCAATTCTAC 240
consensus_6514#1      ATTCAAATATATCACATTTATTACAATGACCATGATACAAGTCTATTTCGTCAATTCTAC 231
                      ************************************************************

consensus_6514#0      ATTACTCCTAATGTGTAAACAATATACGGTACACAGCTATTTCTATGTACTTTCATTTAC 300
consensus_6514#1      ATTACTCCTAATGTGTAAACAATATACGGTACACAGCTATTTCTATGTACTTTCATTTAC 291
                      ************************************************************

consensus_6514#0      TTATGCTTGGACGATACTTGTGATGTATTTCATTGTACTCATTGTTGATCATACTGTGGC 360
consensus_6514#1      TTATGCTTGGACGATACTTGTGATGTATTTCATTGTACTCATTGTTGATCAAACTGTGGC 351
                      *************************************************** ********

consensus_6514#0      TACCGAGAATCCAGAATTGAAGAATATGCTATTATGGTTCAATCATACATGTCATATCAT 420
consensus_6514#1      AACCGAGAA-CCAGAATTGAGATAT---CCATTATGGT-CAACCATACATGTCATATCAT 406
                       ******** **********   **   * ******** *** *****************

consensus_6514#0      TCCA--- 424
consensus_6514#1      TCAGCAG 413
                      **