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Schistosoma mansoni
cluster # 6529 cluster # 6529       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6529#0 length = 676 sequences # 2  
consensus_6529#1 length = 180 sequences # 2  

consensusID : consensus_6529#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 676
fasta sequence
                              [AGTTTTCGAGGGTATGGCTTAGATACGAAGGGATGCAGTTTCATGATTTTAGATGCAAATGAGTAAAGCGATATTTATCTGGACAAGCTTTTGCGCGTTCCTGTTCTTATTGATTTTAAAAGTTGATGAAATCGTTTACTGGAACTGGTTCATCATATTCATACCAATGTGGTCTTTTGACTTTATGTTATTTACTACCTCAATACTATGTATGTCACGGAAGTATGTTCTTATAACTTAACTGATTGATCGTTATGCATTAAACTGATGAATTTTCAGATTTACCCATATAGTTGGTCAAAATAACGTTGAAAGTAGATTCGGTCAGACTCTGATATTGAGTTTTATCTTGTGGAAATTAACTGCACAAATTATTCTTTGCTTATCCTTGGAAGGCCACTTAAAAACATTGTTAGACAGCTTTTCTCAGTCGAATATTGTTAGCCAGACATCAAATAGCAATGAAACCGGTAATTCGACCGAAGTTAAAGCTCTTCTGGTTTATGCAGTGTTTCCTTTATGGACTACAATGGTTGTATGTTTAATAATAGTGTGCGCTCANATCGTANATCCACCCTCAACTGGAATTCGGTCATTTTTTTCAAACAATCAACCATGTTGTGATAATAATGAAAGACGAAGACAACGAAAGACCGATGTTTCAACAGGTTTTGTA]

[+] EMBL CD078452             [AGTTTTCGAGGGTATGGCTTAGATACGAAGGGATGCAGTTTCATGATTTTAGATGCAAATGAGTAAAGCGATATTTATCTGGACAAGCTTTTGCGCGTTCCTGTTCTTATTGATTTTAAAAGTTGATGAAATCGTTTACTGGAACTGGTTCATCATATTCATACCAATGTGGTCTTTTGACTTTATGTTATTTACTACCTCAATACTATGTATGTCACGGAAGTATGTTCTTATAACTTAACTGATTGATCGTTATGCATTAAACTGATGAATTTTCAGATTTACCCATATAGTTGGTCAAAATAACGTTGAAAGTAGATTCGGTCAGACTCTGATATTGAGTTTTATCTTGTGGAAATTAACTGCACAAATTATTCTTTGCTTATCCTTGGAAGGCCACTTAAAAACATTGTTAGACAGCTTTTCTCAGTCGAATATTGTTAGCCAGACATCAAATAGCAATGAAACCGGTAATTCGACCGAAGTTAAAGCTCTTCTGGTTTATGCAGTGTTTCCTTTATGGACTACAATGGTTGTATGTTTAATAATAGTGTGCGCTCANATCGTANATCCACCCTCAACTG                                                                                            ]
[+] EMBL CD065713             [                                                                                                                                                                                                                                                                                           ACCCATATAG TGGTC  AAT ACGTTGAAAGTAGATTCGGTCAGACTCTGATATTGAGTTTTATC TGTGGAAATTAACTGCACAAATTATTCTTTGCTTATCCTTGGAAGGCCACTTAAAAACATTGTTAGACAGCTTTTCTCAGTCGAATATTGTTAGCCAGACATCAAATAGCAATGAAACCGGTAATTCGACCGAAGTTAAAGCTCTTCTGGTTTATGCAGTGTTTCCTTTATGGACTACAATGGTTGTATGTTTAATAATAGTGTGCGCTCAAATCGTAAATCCACCCTCAACTGGAATTCGGTCATTTTTTTCAAACAATCAACCATGTTGTGATAATAATGAAAGACGAAGACAACGAAAGACCGATGTTTCAACAGGTTTTGTA]


>consensus_6529#0 AGTTTTCGAGGGTATGGCTTAGATACGAAGGGATGCAGTTTCATGATTTTAGATGCAAAT GAGTAAAGCGATATTTATCTGGACAAGCTTTTGCGCGTTCCTGTTCTTATTGATTTTAAA AGTTGATGAAATCGTTTACTGGAACTGGTTCATCATATTCATACCAATGTGGTCTTTTGA CTTTATGTTATTTACTACCTCAATACTATGTATGTCACGGAAGTATGTTCTTATAACTTA ACTGATTGATCGTTATGCATTAAACTGATGAATTTTCAGATTTACCCATATAGTTGGTCA AAATAACGTTGAAAGTAGATTCGGTCAGACTCTGATATTGAGTTTTATCTTGTGGAAATT AACTGCACAAATTATTCTTTGCTTATCCTTGGAAGGCCACTTAAAAACATTGTTAGACAG CTTTTCTCAGTCGAATATTGTTAGCCAGACATCAAATAGCAATGAAACCGGTAATTCGAC CGAAGTTAAAGCTCTTCTGGTTTATGCAGTGTTTCCTTTATGGACTACAATGGTTGTATG TTTAATAATAGTGTGCGCTCANATCGTANATCCACCCTCAACTGGAATTCGGTCATTTTT TTCAAACAATCAACCATGTTGTGATAATAATGAAAGACGAAGACAACGAAAGACCGATGT TTCAACAGGTTTTGTA



consensusID : consensus_6529#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 180
fasta sequence
                              [TCAAAATCGATAAGAACAGGAACGCGCAAAAGCTTGTCCAGACAAATATCGCTTTACTCAATATCAGAGCTCTGACCGAATCTACTTTCAACGATATTTTGACCAACTATATGGGATAATTTCCGTGACATACATAGTATTGAGGTAGTAAATAACATAAAGTCAAAAGACCACATTGGT]

[+] EMBL CD195849             [TCAAAATCGATAAGAACAGGAACGCGCAAAAGCTTGTCCAGACAAATATCGCTTTACTCAATATCAGAGCTCTGACCGAATCTACTTTCAACGATATTTTGACCAACTATATGGGATAATTTCCGTGACATACATA                                            ]
[+] EMBL CD196241             [            AGAACAGGAACGCGCAAAAGCTTGTCCAGATAAATATCGCTTTACTCAATATCAGAG TCTGACCGAATCTACTTTCAACGTTATTTTGACCAACTATATGGGTAAATTTCCGTGACATACATAGTATTGAGGTAGTAAATAACATAAAGTCAAAAGACCACATTGGT]


>consensus_6529#1 TCAAAATCGATAAGAACAGGAACGCGCAAAAGCTTGTCCAGACAAATATCGCTTTACTCA ATATCAGAGCTCTGACCGAATCTACTTTCAACGATATTTTGACCAACTATATGGGATAAT TTCCGTGACATACATAGTATTGAGGTAGTAAATAACATAAAGTCAAAAGACCACATTGGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6529#0      AGTTTTCGAGGGTATGGCTTAGATACGAAGGGATGCAGTTTCATGATTTTAGATGCAAAT 60
consensus_6529#1      ------------------------------------------------------------
                                                                                  

consensus_6529#0      GAGTAAAGCGATATTTATCTGGACAAGCTTTTGCGCGTTCCTGTTCTTATTGATTTTAAA 120
consensus_6529#1      ------------------------------------------------------------
                                                                                  

consensus_6529#0      AGTTGATGAAATCGTTTACTGGAACTGGTTCATCATATTCATACCAATGTGGTCTTTTGA 180
consensus_6529#1      ------------------------------------------------------------
                                                                                  

consensus_6529#0      CTTTATGTTATTTACTACCTCAATACTATGTATGTCACGGAAGTATGTTCTTATAACTTA 240
consensus_6529#1      ------------------------------------------------------------
                                                                                  

consensus_6529#0      ACTGATTGATCGTTATGCATTAAACTGATGAATTTTCAGATTTACCCATATAGTTGGTCA 300
consensus_6529#1      ------------------------------------------------------------
                                                                                  

consensus_6529#0      AAATAACGTTGAAAGTAGATTCGGTCAGACTCTGATATTGAGTTTTATCTTGTGGAAATT 360
consensus_6529#1      ------------------------------------------------------------
                                                                                  

consensus_6529#0      AACTGCACAAATTATTCTTTGCTTATCCTTGGAAGGCCACTTAAAAACATTGTTAGACAG 420
consensus_6529#1      ------------------------------------------------------------
                                                                                  

consensus_6529#0      CTTTTCTCAGTCGAATATTGTTAGCCAGACATCAAATAGCAATGAAACCGGTAATTCGAC 480
consensus_6529#1      -----------------------------------------------------------T 1
                                                                                  

consensus_6529#0      CGAAGTTAAAGCTCTTCTGGTTTATGCAGTGTTTCCTTTATGGACTACAATGGTTGTATG 540
consensus_6529#1      CAAAATCGATAAGAA-CAGGAACGCGCAAAAGCTTGTCCA--GACAAATATCGCTTTA-- 56
                      * ** *  *       * **     ***     *  *  *  *** *  ** * * **  

consensus_6529#0      TTTAATAATAGTGTGCGCTCANATCGTANATCCACCCTCAACTGGAATTCGGTCATTTTT 600
consensus_6529#1      CTCAATATCA----GAGCTCTGACCG--AATCTACTTTCAACGATATTTTGACCAACTAT 110
                       * ****  *    * ****  * **   *** **  *****   * ** *  **  * *

consensus_6529#0      TTCAAACAATCAACCATGTTGTG-ATAATAATGAAAGACGAAGACAACGAAAGACCGATG 659
consensus_6529#1      ATGGGATAATTT-CCGTGACATACATAGTATTGAGGTA-GTAAATAACATAAAGTCAAAA 168
                       *   * ***   ** **   *  *** ** ***   * * * * ***  **   * *  

consensus_6529#0      TTTCA-ACAGGTTTTGTA 676
consensus_6529#1      GACCACATTGGT------ 180
                         ** *  ***      




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)