These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6529#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 676 fasta sequence [AGTTTTCGAGGGTATGGCTTAGATACGAAGGGATGCAGTTTCATGATTTTAGATGCAAATGAGTAAAGCGATATTTATCTGGACAAGCTTTTGCGCGTTCCTGTTCTTATTGATTTTAAAAGTTGATGAAATCGTTTACTGGAACTGGTTCATCATATTCATACCAATGTGGTCTTTTGACTTTATGTTATTTACTACCTCAATACTATGTATGTCACGGAAGTATGTTCTTATAACTTAACTGATTGATCGTTATGCATTAAACTGATGAATTTTCAGATTTACCCATATAGTTGGTCAAAATAACGTTGAAAGTAGATTCGGTCAGACTCTGATATTGAGTTTTATCTTGTGGAAATTAACTGCACAAATTATTCTTTGCTTATCCTTGGAAGGCCACTTAAAAACATTGTTAGACAGCTTTTCTCAGTCGAATATTGTTAGCCAGACATCAAATAGCAATGAAACCGGTAATTCGACCGAAGTTAAAGCTCTTCTGGTTTATGCAGTGTTTCCTTTATGGACTACAATGGTTGTATGTTTAATAATAGTGTGCGCTCANATCGTANATCCACCCTCAACTGGAATTCGGTCATTTTTTTCAAACAATCAACCATGTTGTGATAATAATGAAAGACGAAGACAACGAAAGACCGATGTTTCAACAGGTTTTGTA] [+] EMBL CD078452 [AGTTTTCGAGGGTATGGCTTAGATACGAAGGGATGCAGTTTCATGATTTTAGATGCAAATGAGTAAAGCGATATTTATCTGGACAAGCTTTTGCGCGTTCCTGTTCTTATTGATTTTAAAAGTTGATGAAATCGTTTACTGGAACTGGTTCATCATATTCATACCAATGTGGTCTTTTGACTTTATGTTATTTACTACCTCAATACTATGTATGTCACGGAAGTATGTTCTTATAACTTAACTGATTGATCGTTATGCATTAAACTGATGAATTTTCAGATTTACCCATATAGTTGGTCAAAATAACGTTGAAAGTAGATTCGGTCAGACTCTGATATTGAGTTTTATCTTGTGGAAATTAACTGCACAAATTATTCTTTGCTTATCCTTGGAAGGCCACTTAAAAACATTGTTAGACAGCTTTTCTCAGTCGAATATTGTTAGCCAGACATCAAATAGCAATGAAACCGGTAATTCGACCGAAGTTAAAGCTCTTCTGGTTTATGCAGTGTTTCCTTTATGGACTACAATGGTTGTATGTTTAATAATAGTGTGCGCTCANATCGTANATCCACCCTCAACTG ] [+] EMBL CD065713 [ ACCCATATAG TGGTC AAT ACGTTGAAAGTAGATTCGGTCAGACTCTGATATTGAGTTTTATC TGTGGAAATTAACTGCACAAATTATTCTTTGCTTATCCTTGGAAGGCCACTTAAAAACATTGTTAGACAGCTTTTCTCAGTCGAATATTGTTAGCCAGACATCAAATAGCAATGAAACCGGTAATTCGACCGAAGTTAAAGCTCTTCTGGTTTATGCAGTGTTTCCTTTATGGACTACAATGGTTGTATGTTTAATAATAGTGTGCGCTCAAATCGTAAATCCACCCTCAACTGGAATTCGGTCATTTTTTTCAAACAATCAACCATGTTGTGATAATAATGAAAGACGAAGACAACGAAAGACCGATGTTTCAACAGGTTTTGTA] consensusID : consensus_6529#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 180 fasta sequence [TCAAAATCGATAAGAACAGGAACGCGCAAAAGCTTGTCCAGACAAATATCGCTTTACTCAATATCAGAGCTCTGACCGAATCTACTTTCAACGATATTTTGACCAACTATATGGGATAATTTCCGTGACATACATAGTATTGAGGTAGTAAATAACATAAAGTCAAAAGACCACATTGGT] [+] EMBL CD195849 [TCAAAATCGATAAGAACAGGAACGCGCAAAAGCTTGTCCAGACAAATATCGCTTTACTCAATATCAGAGCTCTGACCGAATCTACTTTCAACGATATTTTGACCAACTATATGGGATAATTTCCGTGACATACATA ] [+] EMBL CD196241 [ AGAACAGGAACGCGCAAAAGCTTGTCCAGATAAATATCGCTTTACTCAATATCAGAG TCTGACCGAATCTACTTTCAACGTTATTTTGACCAACTATATGGGTAAATTTCCGTGACATACATAGTATTGAGGTAGTAAATAACATAAAGTCAAAAGACCACATTGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6529#0 AGTTTTCGAGGGTATGGCTTAGATACGAAGGGATGCAGTTTCATGATTTTAGATGCAAAT 60 consensus_6529#1 ------------------------------------------------------------ consensus_6529#0 GAGTAAAGCGATATTTATCTGGACAAGCTTTTGCGCGTTCCTGTTCTTATTGATTTTAAA 120 consensus_6529#1 ------------------------------------------------------------ consensus_6529#0 AGTTGATGAAATCGTTTACTGGAACTGGTTCATCATATTCATACCAATGTGGTCTTTTGA 180 consensus_6529#1 ------------------------------------------------------------ consensus_6529#0 CTTTATGTTATTTACTACCTCAATACTATGTATGTCACGGAAGTATGTTCTTATAACTTA 240 consensus_6529#1 ------------------------------------------------------------ consensus_6529#0 ACTGATTGATCGTTATGCATTAAACTGATGAATTTTCAGATTTACCCATATAGTTGGTCA 300 consensus_6529#1 ------------------------------------------------------------ consensus_6529#0 AAATAACGTTGAAAGTAGATTCGGTCAGACTCTGATATTGAGTTTTATCTTGTGGAAATT 360 consensus_6529#1 ------------------------------------------------------------ consensus_6529#0 AACTGCACAAATTATTCTTTGCTTATCCTTGGAAGGCCACTTAAAAACATTGTTAGACAG 420 consensus_6529#1 ------------------------------------------------------------ consensus_6529#0 CTTTTCTCAGTCGAATATTGTTAGCCAGACATCAAATAGCAATGAAACCGGTAATTCGAC 480 consensus_6529#1 -----------------------------------------------------------T 1 consensus_6529#0 CGAAGTTAAAGCTCTTCTGGTTTATGCAGTGTTTCCTTTATGGACTACAATGGTTGTATG 540 consensus_6529#1 CAAAATCGATAAGAA-CAGGAACGCGCAAAAGCTTGTCCA--GACAAATATCGCTTTA-- 56 * ** * * * ** *** * * * *** * ** * * ** consensus_6529#0 TTTAATAATAGTGTGCGCTCANATCGTANATCCACCCTCAACTGGAATTCGGTCATTTTT 600 consensus_6529#1 CTCAATATCA----GAGCTCTGACCG--AATCTACTTTCAACGATATTTTGACCAACTAT 110 * **** * * **** * ** *** ** ***** * ** * ** * * consensus_6529#0 TTCAAACAATCAACCATGTTGTG-ATAATAATGAAAGACGAAGACAACGAAAGACCGATG 659 consensus_6529#1 ATGGGATAATTT-CCGTGACATACATAGTATTGAGGTA-GTAAATAACATAAAGTCAAAA 168 * * *** ** ** * *** ** *** * * * * *** ** * * consensus_6529#0 TTTCA-ACAGGTTTTGTA 676 consensus_6529#1 GACCACATTGGT------ 180 ** * *** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||