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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6529#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 676 fasta sequence
[AGTTTTCGAGGGTATGGCTTAGATACGAAGGGATGCAGTTTCATGATTTTAGATGCAAATGAGTAAAGCGATATTTATCTGGACAAGCTTTTGCGCGTTCCTGTTCTTATTGATTTTAAAAGTTGATGAAATCGTTTACTGGAACTGGTTCATCATATTCATACCAATGTGGTCTTTTGACTTTATGTTATTTACTACCTCAATACTATGTATGTCACGGAAGTATGTTCTTATAACTTAACTGATTGATCGTTATGCATTAAACTGATGAATTTTCAGATTTACCCATATAGTTGGTCAAAATAACGTTGAAAGTAGATTCGGTCAGACTCTGATATTGAGTTTTATCTTGTGGAAATTAACTGCACAAATTATTCTTTGCTTATCCTTGGAAGGCCACTTAAAAACATTGTTAGACAGCTTTTCTCAGTCGAATATTGTTAGCCAGACATCAAATAGCAATGAAACCGGTAATTCGACCGAAGTTAAAGCTCTTCTGGTTTATGCAGTGTTTCCTTTATGGACTACAATGGTTGTATGTTTAATAATAGTGTGCGCTCANATCGTANATCCACCCTCAACTGGAATTCGGTCATTTTTTTCAAACAATCAACCATGTTGTGATAATAATGAAAGACGAAGACAACGAAAGACCGATGTTTCAACAGGTTTTGTA]
[+] EMBL CD078452 [AGTTTTCGAGGGTATGGCTTAGATACGAAGGGATGCAGTTTCATGATTTTAGATGCAAATGAGTAAAGCGATATTTATCTGGACAAGCTTTTGCGCGTTCCTGTTCTTATTGATTTTAAAAGTTGATGAAATCGTTTACTGGAACTGGTTCATCATATTCATACCAATGTGGTCTTTTGACTTTATGTTATTTACTACCTCAATACTATGTATGTCACGGAAGTATGTTCTTATAACTTAACTGATTGATCGTTATGCATTAAACTGATGAATTTTCAGATTTACCCATATAGTTGGTCAAAATAACGTTGAAAGTAGATTCGGTCAGACTCTGATATTGAGTTTTATCTTGTGGAAATTAACTGCACAAATTATTCTTTGCTTATCCTTGGAAGGCCACTTAAAAACATTGTTAGACAGCTTTTCTCAGTCGAATATTGTTAGCCAGACATCAAATAGCAATGAAACCGGTAATTCGACCGAAGTTAAAGCTCTTCTGGTTTATGCAGTGTTTCCTTTATGGACTACAATGGTTGTATGTTTAATAATAGTGTGCGCTCANATCGTANATCCACCCTCAACTG ]
[+] EMBL CD065713 [ ACCCATATAG TGGTC AAT ACGTTGAAAGTAGATTCGGTCAGACTCTGATATTGAGTTTTATC TGTGGAAATTAACTGCACAAATTATTCTTTGCTTATCCTTGGAAGGCCACTTAAAAACATTGTTAGACAGCTTTTCTCAGTCGAATATTGTTAGCCAGACATCAAATAGCAATGAAACCGGTAATTCGACCGAAGTTAAAGCTCTTCTGGTTTATGCAGTGTTTCCTTTATGGACTACAATGGTTGTATGTTTAATAATAGTGTGCGCTCAAATCGTAAATCCACCCTCAACTGGAATTCGGTCATTTTTTTCAAACAATCAACCATGTTGTGATAATAATGAAAGACGAAGACAACGAAAGACCGATGTTTCAACAGGTTTTGTA]
consensusID : consensus_6529#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 180 fasta sequence
[TCAAAATCGATAAGAACAGGAACGCGCAAAAGCTTGTCCAGACAAATATCGCTTTACTCAATATCAGAGCTCTGACCGAATCTACTTTCAACGATATTTTGACCAACTATATGGGATAATTTCCGTGACATACATAGTATTGAGGTAGTAAATAACATAAAGTCAAAAGACCACATTGGT]
[+] EMBL CD195849 [TCAAAATCGATAAGAACAGGAACGCGCAAAAGCTTGTCCAGACAAATATCGCTTTACTCAATATCAGAGCTCTGACCGAATCTACTTTCAACGATATTTTGACCAACTATATGGGATAATTTCCGTGACATACATA ]
[+] EMBL CD196241 [ AGAACAGGAACGCGCAAAAGCTTGTCCAGATAAATATCGCTTTACTCAATATCAGAG TCTGACCGAATCTACTTTCAACGTTATTTTGACCAACTATATGGGTAAATTTCCGTGACATACATAGTATTGAGGTAGTAAATAACATAAAGTCAAAAGACCACATTGGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6529#0 AGTTTTCGAGGGTATGGCTTAGATACGAAGGGATGCAGTTTCATGATTTTAGATGCAAAT 60
consensus_6529#1 ------------------------------------------------------------
consensus_6529#0 GAGTAAAGCGATATTTATCTGGACAAGCTTTTGCGCGTTCCTGTTCTTATTGATTTTAAA 120
consensus_6529#1 ------------------------------------------------------------
consensus_6529#0 AGTTGATGAAATCGTTTACTGGAACTGGTTCATCATATTCATACCAATGTGGTCTTTTGA 180
consensus_6529#1 ------------------------------------------------------------
consensus_6529#0 CTTTATGTTATTTACTACCTCAATACTATGTATGTCACGGAAGTATGTTCTTATAACTTA 240
consensus_6529#1 ------------------------------------------------------------
consensus_6529#0 ACTGATTGATCGTTATGCATTAAACTGATGAATTTTCAGATTTACCCATATAGTTGGTCA 300
consensus_6529#1 ------------------------------------------------------------
consensus_6529#0 AAATAACGTTGAAAGTAGATTCGGTCAGACTCTGATATTGAGTTTTATCTTGTGGAAATT 360
consensus_6529#1 ------------------------------------------------------------
consensus_6529#0 AACTGCACAAATTATTCTTTGCTTATCCTTGGAAGGCCACTTAAAAACATTGTTAGACAG 420
consensus_6529#1 ------------------------------------------------------------
consensus_6529#0 CTTTTCTCAGTCGAATATTGTTAGCCAGACATCAAATAGCAATGAAACCGGTAATTCGAC 480
consensus_6529#1 -----------------------------------------------------------T 1
consensus_6529#0 CGAAGTTAAAGCTCTTCTGGTTTATGCAGTGTTTCCTTTATGGACTACAATGGTTGTATG 540
consensus_6529#1 CAAAATCGATAAGAA-CAGGAACGCGCAAAAGCTTGTCCA--GACAAATATCGCTTTA-- 56
* ** * * * ** *** * * * *** * ** * * **
consensus_6529#0 TTTAATAATAGTGTGCGCTCANATCGTANATCCACCCTCAACTGGAATTCGGTCATTTTT 600
consensus_6529#1 CTCAATATCA----GAGCTCTGACCG--AATCTACTTTCAACGATATTTTGACCAACTAT 110
* **** * * **** * ** *** ** ***** * ** * ** * *
consensus_6529#0 TTCAAACAATCAACCATGTTGTG-ATAATAATGAAAGACGAAGACAACGAAAGACCGATG 659
consensus_6529#1 ATGGGATAATTT-CCGTGACATACATAGTATTGAGGTA-GTAAATAACATAAAGTCAAAA 168
* * *** ** ** * *** ** *** * * * * *** ** * *
consensus_6529#0 TTTCA-ACAGGTTTTGTA 676
consensus_6529#1 GACCACATTGGT------ 180
** * ***
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||