cluster # 6530

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 6530 cluster # 6530 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6530#0 length = 945 sequences # 3

consensus_6530#1 length = 470 sequences # 1

consensusID : consensus_6530#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 945
fasta sequence

                              [GAGCCATATTCGGCACGAGGCGGTTTTACTCTTGTGATTTGTTGCATGGACTATGGGATCTAATGAGGAATATCCTTCTCCATCAGGGAATCTACCACTTCAGTTTTCGGCTAAACGGATTTCCAAAGCTCGTAAGTCTGGTTCCGGAGACCACCAAAAATGCAGTCCGCTTAGAAAAAATCATGTTGACGATCCAAACGGCATTATCGTCGCTCCTCCCATTGATAGTCGAGAACTTGATCGCCTTAAATTCACTAACCCAGGTAGACAGATGGAAGAACTAGAAGTCGGTTGGTCCGAAGCAAATATGACACGAAGTGTTCGCAGACAAATGAGCGTTAAATCTAGTTATAAATCATCAGATCGGTTGCATCCGTTATATGATTCTCGTGGCCGCCTTTTAGGAACTTTGGACTATAGTTGCGATTGTCTAAAATCTGAATGTCCTGGGTGTCATTTACCATGTCGTCGGTGCCATTCTACGTTTTGTGGAGCATCATGTCGAATTTATCGAACTTATCGTGTTAATGAAGTTAAACTGTTTATCTGACTTCATGAGTTCAATCGTTTGTCGTTATCCACCACTAAAGTTTTTTTACCATCTTTTTATCCAAATAAATTATTATTATTATTATTATTATTCAATGAGAGTTTTATGTCTCTACGTTTACTTTAAATATCAATTATCTCAGAAAAAATACGTGTATTTCCCGAATATAACATGAACATTNTAAATGTCTTCGCTCAAGCTTACTGCCATTTATTCAGCATGATTATTAGTCATACCCTCTAT-AAAGCAATAATGAAAAGCGTTTAACTTCTTCCTAGGACATATTTCTCAGTGTGGACTGTTCATTTAATAACTGANTAC-AATATTCATTGGAGGAAATGTTAGATACCTG-AAGTACCACTAAA-TATTTGCATTCTCCTTTCCAAAAT-AATACT]

[+] EMBL CD081609             [GAGCCATATTCGGCACGAGGCGGTTTTACTCTTGTGATTTGTTGCATGGACTATGGGATCTAATGAGGAATATCCTTCTCCATCAGGGAATCTACCACTTCAGTTTTCGGCTAAACGGATTTCCAAAGCTCGTAAGTCTGGTTCCGGAGACCACCAAAAATGCAGTCCGCTTAGAAAAAATCATGTTGACGATCCAAACGGCATTATCGTCGCTCCTCCCATTGATAGTCGAGAACTTGATCGCCTTAAATTCACTAACCCAGGTAGACAGATGGAAGAACTAGAAGTCGGTTGGTCCGAAGCAAATATGACACGAAGTGTTCGCAGACAAATGAGCGTTAAATCTAGTTATAAATCATCAGATCGGTTGCATCCGTTATATGATTCTCGTGGCCGCCTTTTAGGAACTTTGGACTATAGTTGCGATTGTCTAAAATCTGAATGTCCTGGGTGTCATTTACCATGTCGTCGGTGCCATTCTACGTTTTGTGGAGCATCATGTCGAATTTATCGAACTTATCGTGTTAATGAAGTTAAACTGTTTATCTGACTTCATGAGTTCAATCGTTTGTCGTTATCCACCACTAAAGTTTTTTTACCATCTTTTTATCCAAATAAATTATTATTATTATTATTATTATTCAATGAGAGTTTTATGTCTCTACGTTTACTTTAAATATCAATTATCTCAGAAAAAATACGTGTATTTCCCGAATATAACATGAACATTNTAAATGTCTTCGCTCAAGCTTACTGCCATTTATTCAGCATGATTATTAGTCATACCCTCTAT AAAGCAATAATGAAAAGCGTTTAACTTCTTCCTAGGACATATTTCTCAGTGTGGACTGTTCATTTAATAACTGANTAC AATATTCATTGGAGGAAATGTTAGATACCTG AAGTACCACTAAA TATTTGCATTCTCCTTTCCAAAAT AATAC ]
[-] EMBL CD075432             [                                                                                                                                                                                                                                                                                                                                    CAGACAAATGAGCGTTAAATCTAGTTATAAATCATCAGATCGGTTGCATCCGTTATATGATTCTCGTGGCCGCCTTTTAGGAACTTTGGACTATAGTTGCGATTGTCTAAAATCTGAATGTCCTGGGTGTCATTTACCATGTCGTCGGTGCCATTCTACGTTTTGTGGAGCATCATGTCGAATTTATCGAACTTATCGTGTTAATGAAGTTAAACTGTTTATCTGACTTCATGAGTTCAATCGTTTGTCGTTATCCACCACTAAAGTTTTTTTACCATCTTTTTATCCAAATAAATTATTATTATTATTATTATTATTCAATGAGAGTTTTATGTCTCTACGTTTACTTTAAATATCAATTATCTCAGAAAAAATACGTGTATTTCCCGAATATAACATGAACATTTTAAATGTCTTCGCTCAAGCTTACTGCCATTTATTCAGCATGATTATTAGTCATACCCTCTATAAAAGCAATAATGAAAAGCGTTTAACTTCTTCCTAGGACATATTTCTCAGTGTGGACTGTTCATTTAATAACTGATAACAAATATTCATTGGAGG AATGTTAGATAACTGAAAGTACCACTAAATTATTTGCATTCTCCTTTCCAAAATAAATACT]
[+] EMBL CD065770             [                                                                                                                                                                                                                                                                                                                                                                                                                                   ttgGCGA TGTCTAAAATCTGAATGTCCTGGGTGTCATTTACCATGTCGTCGGTGCCATTCTACGTTTGGTGGAGCATCATGTCGAATTTATCGAACTTATCGTGTTAATGAAGTTAAACTGTTTATCTGACTTCATGAGTTCAATCGTTTGTCGTT                                                                                                                                                                                                                                                                                                                                                                                      ]




>consensus_6530#0
GAGCCATATTCGGCACGAGGCGGTTTTACTCTTGTGATTTGTTGCATGGACTATGGGATC
TAATGAGGAATATCCTTCTCCATCAGGGAATCTACCACTTCAGTTTTCGGCTAAACGGAT
TTCCAAAGCTCGTAAGTCTGGTTCCGGAGACCACCAAAAATGCAGTCCGCTTAGAAAAAA
TCATGTTGACGATCCAAACGGCATTATCGTCGCTCCTCCCATTGATAGTCGAGAACTTGA
TCGCCTTAAATTCACTAACCCAGGTAGACAGATGGAAGAACTAGAAGTCGGTTGGTCCGA
AGCAAATATGACACGAAGTGTTCGCAGACAAATGAGCGTTAAATCTAGTTATAAATCATC
AGATCGGTTGCATCCGTTATATGATTCTCGTGGCCGCCTTTTAGGAACTTTGGACTATAG
TTGCGATTGTCTAAAATCTGAATGTCCTGGGTGTCATTTACCATGTCGTCGGTGCCATTC
TACGTTTTGTGGAGCATCATGTCGAATTTATCGAACTTATCGTGTTAATGAAGTTAAACT
GTTTATCTGACTTCATGAGTTCAATCGTTTGTCGTTATCCACCACTAAAGTTTTTTTACC
ATCTTTTTATCCAAATAAATTATTATTATTATTATTATTATTCAATGAGAGTTTTATGTC
TCTACGTTTACTTTAAATATCAATTATCTCAGAAAAAATACGTGTATTTCCCGAATATAA
CATGAACATTNTAAATGTCTTCGCTCAAGCTTACTGCCATTTATTCAGCATGATTATTAG
TCATACCCTCTATAAAGCAATAATGAAAAGCGTTTAACTTCTTCCTAGGACATATTTCTC
AGTGTGGACTGTTCATTTAATAACTGANTACAATATTCATTGGAGGAAATGTTAGATACC
TGAAGTACCACTAAATATTTGCATTCTCCTTTCCAAAATAATACT

consensusID : consensus_6530#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 470
fasta sequence

                              [CCATCTAATTTAACAGCAATCTTTTGTTTGTTGAATCGAGTTAAACATATTTTCTAATTATCTCGTTTACTTTCTTGTTTTTACTTTAGGTTAAACTGTTTATCTGACTTCATGAGTTCAATCGTTTGTCGTTATCCACCACTAAAGTTTTTTTTACCATCTTTTTATCCAAATAAATTATTATTATTATTATTATTATTCAATGAGAGTTTTATGTCTCTACGTTTACTTTAAATATCAATTATCTCAGAAAAAATACGTGTATTTCCCGAATATAACATGAACATTTTAAATGTCTTCGCTCAAGCTTACTGCCATTTATTCAGCATGATTATTAGTCATACCCTCTATAAAAGCAATAATGAAAAGCGTTTAACTTCTTCCTAGGACATATTTCTCAGTGTGGACTGTTCATTTAATAACTGATAACAAATATTCATTGGAGGAATGTTAGATAACTGAAAGTACCA]

[-] EMBL CD152391             [CCATCTAATTTAACAGCAATCTTTTGTTTGTTGAATCGAGTTAAACATATTTTCTAATTATCTCGTTTACTTTCTTGTTTTTACTTTAGGTTAAACTGTTTATCTGACTTCATGAGTTCAATCGTTTGTCGTTATCCACCACTAAAGTTTTTTTTACCATCTTTTTATCCAAATAAATTATTATTATTATTATTATTATTCAATGAGAGTTTTATGTCTCTACGTTTACTTTAAATATCAATTATCTCAGAAAAAATACGTGTATTTCCCGAATATAACATGAACATTTTAAATGTCTTCGCTCAAGCTTACTGCCATTTATTCAGCATGATTATTAGTCATACCCTCTATAAAAGCAATAATGAAAAGCGTTTAACTTCTTCCTAGGACATATTTCTCAGTGTGGACTGTTCATTTAATAACTGATAACAAATATTCATTGGAGGAATGTTAGATAACTGAAAGTACCA]




>consensus_6530#1
CCATCTAATTTAACAGCAATCTTTTGTTTGTTGAATCGAGTTAAACATATTTTCTAATTA
TCTCGTTTACTTTCTTGTTTTTACTTTAGGTTAAACTGTTTATCTGACTTCATGAGTTCA
ATCGTTTGTCGTTATCCACCACTAAAGTTTTTTTTACCATCTTTTTATCCAAATAAATTA
TTATTATTATTATTATTATTCAATGAGAGTTTTATGTCTCTACGTTTACTTTAAATATCA
ATTATCTCAGAAAAAATACGTGTATTTCCCGAATATAACATGAACATTTTAAATGTCTTC
GCTCAAGCTTACTGCCATTTATTCAGCATGATTATTAGTCATACCCTCTATAAAAGCAAT
AATGAAAAGCGTTTAACTTCTTCCTAGGACATATTTCTCAGTGTGGACTGTTCATTTAAT
AACTGATAACAAATATTCATTGGAGGAATGTTAGATAACTGAAAGTACCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6530#0      GAGCCATATTCGGCACGAGGCGGTTTTACTCTTGTGATTTGTTGCATGGACTATGGGATC 60
consensus_6530#1      ------------------------------------------------------------
                                                                                  

consensus_6530#0      TAATGAGGAATATCCTTCTCCATCAGGGAATCTACCACTTCAGTTTTCGGCTAAACGGAT 120
consensus_6530#1      ------------------------------------------------------------
                                                                                  

consensus_6530#0      TTCCAAAGCTCGTAAGTCTGGTTCCGGAGACCACCAAAAATGCAGTCCGCTTAGAAAAAA 180
consensus_6530#1      ------------------------------------------------------------
                                                                                  

consensus_6530#0      TCATGTTGACGATCCAAACGGCATTATCGTCGCTCCTCCCATTGATAGTCGAGAACTTGA 240
consensus_6530#1      ------------------------------------------------------------
                                                                                  

consensus_6530#0      TCGCCTTAAATTCACTAACCCAGGTAGACAGATGGAAGAACTAGAAGTCGGTTGGTCCGA 300
consensus_6530#1      ------------------------------------------------------------
                                                                                  

consensus_6530#0      AGCAAATATGACACGAAGTGTTCGCAGACAAATGAGCGTTAAATCTAGTTATAAATCATC 360
consensus_6530#1      ------------------------------------------------------------
                                                                                  

consensus_6530#0      AGATCGGTTGCATCCGTTATATGATTCTCGTGGCCGCCTTTTAGGAACTTTGGACTATAG 420
consensus_6530#1      ------------------------------------------------------------
                                                                                  

consensus_6530#0      TTGCGATTGTCTAAAATCTGAATGTCCTGGGTGTCATTTACCATGTCGTCGGTGCCATTC 480
consensus_6530#1      -----------------CCATCTAATTTAACAGCAATCTTTTGTTTGTTGAATCGAGTTA 43
                                       *    *    *    *  ** *    * *  *   *    ** 

consensus_6530#0      TACGT-TTTGTGGAGCATCATGTCGAATTTATCGAACTTATCGTGTTAATGAAGTTAAAC 539
consensus_6530#1      AACATATTTTCTAATTATCTCGTTTACTTTCTTGTTTTTACTTT-------AGGTTAAAC 96
                       ** * ***    *  ***  **  * *** * *   ***   *       * *******

consensus_6530#0      TGTTTATCTGACTTCATGAGTTCAATCGTTTGTCGTTATCCACCACTAAAGTTTTTTT-A 598
consensus_6530#1      TGTTTATCTGACTTCATGAGTTCAATCGTTTGTCGTTATCCACCACTAAAGTTTTTTTTA 156
                      ********************************************************** *

consensus_6530#0      CCATCTTTTTATCCAAATAAATTATTATTATTATTATTATTATTCAATGAGAGTTTTATG 658
consensus_6530#1      CCATCTTTTTATCCAAATAAATTATTATTATTATTATTATTATTCAATGAGAGTTTTATG 216
                      ************************************************************

consensus_6530#0      TCTCTACGTTTACTTTAAATATCAATTATCTCAGAAAAAATACGTGTATTTCCCGAATAT 718
consensus_6530#1      TCTCTACGTTTACTTTAAATATCAATTATCTCAGAAAAAATACGTGTATTTCCCGAATAT 276
                      ************************************************************

consensus_6530#0      AACATGAACATTNTAAATGTCTTCGCTCAAGCTTACTGCCATTTATTCAGCATGATTATT 778
consensus_6530#1      AACATGAACATTTTAAATGTCTTCGCTCAAGCTTACTGCCATTTATTCAGCATGATTATT 336
                      ************ ***********************************************

consensus_6530#0      AGTCATACCCTCTATAAA-GCAATAATGAAAAGCGTTTAACTTCTTCCTAGGACATATTT 837
consensus_6530#1      AGTCATACCCTCTATAAAAGCAATAATGAAAAGCGTTTAACTTCTTCCTAGGACATATTT 396
                      ****************** *****************************************

consensus_6530#0      CTCAGTGTGGACTGTTCATTTAATAACTGANTACAA-TATTCATTGGAGGAAATGTTAGA 896
consensus_6530#1      CTCAGTGTGGACTGTTCATTTAATAACTGATAACAAATATTCATTGGAGGAA-TGTTAGA 455
                      ******************************  **** *************** *******

consensus_6530#0      TACCTGAA-GTACCACTAAATATTTGCATTCTCCTTTCCAAAATAATACT 945
consensus_6530#1      TAACTGAAAGTACCA----------------------------------- 470
                      ** ***** ******