|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6533#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 740 fasta sequence
[TCCAATGGTTAGAACCCAAAAAKASAGGAAATTGAGGAAAACAAACGGAGGAGAAGAAGAAGAAGGAGAAAGTGAAAAAATGTAACTACATCACCAATTGAGAAACTTAATGTTAAATTGCACCATACTGGMTTACAACATATAAGYGAAATTAGATCAAAGAGATCAATGCATGCATACATACATACACACACATACATATGCATAATCT-AAAAATATTGCCTAAATTTACCAAACCAAAAAACCGTATAGAATGATCAATGAAAAAGAACAACAACAACACAACTATGAATGGATATCACTAATTACTACTACGTCTTTACTAGATCTGATTTACGGAAGCAGAAGCATAAACATGACATACATACATACATATACATTCAGTATGTATATAAGGGTCAAAAGTTC---TAATTCTTACATTAAAATAGTATCTGTAATAACAATAGTAGTAGTAGAAGAAGAACAATACAGTCAGAATGAATATTACACAATCCAACTAACTTATTGTAAATGAAGAAGGGGGGGGACAGAAATTAAGAGGGAGTATGCTCTTCATTCAGTC-AAAAAAAAATGCCATGTTTTAACAACTTGCTAATACGTTCCCCTTTGTAGAGCAATTACAAATGACAAGAATAATAACTGATGAGAAAGGAAGTGTTGTATTTTATCATCAAAACGACCATATCAGTCAGTAAGTATATGATGCATGTAACTTTTGAATGAATGGAACGGGGAAAACA]
[-] EMBL SM1247316 [TCCAATGGTTAGAACCCAAAAAKASAGGAAATTGAGGAAAACAAACGGAGGAGAAGAAGAAGAAGGAGAAAGTGAAAAAATGTAACTACATCACCAATTGAGAAACTTAATGTTAAATTGCACCATACTGGMTTACAACATATAAGYGAAATTAGATCAAAGAGATCAATGCATGCATACATACATACACACACATACATATGCATAATCT AAAAATATTGCCTAAATTTACCAAACCAAAAAACCGTATAGAATGATCAATGAAAAAGAACAACAACAACACAACTATGAATGGATATCACTAATTACTACTACGTCTTTACTAGATCTGATTTACGGAAGCAAAAGCATAAACATGACATACATACATACATATACATTCAGTATGTATATAAGGGNCAAAAGTTCANNGYATTCTTACATTAAAATAGTATCTGTAATAACAATAGTAGTAGAAGAAGAAGAACAATACAGTCAGAATGAATA TACACAATCCAACTAACTTATTGTAAATGAAG ]
[+] EMBL CD066046 [ ACTTAATGTTAAATTGCACCATACTGGTTTACAACATATAAGAGAAATTAGATCAAAGAGATCAATGCATGCATACATACATACACACACATACATATGCATAATCTAAAAAATATTGCCTAAATTAACAAAACAAAAAAAACGTATAGAATGATCAATGAAAAAGAACAACAACAACACAACTATGAATGGATATCACTAATTACTACTACGTCTTCACTAGATCTGATTTACGGAAGCAGAAGCATAAACATGACATACATACATACATATACATTCAGTATGTATATAAGGGTCAAAAGTTC TAATTCTTACATTAAAATAGTATCTGTAATAACAATAGTAGTAGTAGAAGAAGAACAATACAGTCAGAATGAATATTACACAATCCAACTAACTTATTGTAAATGAAGAAGGGGGGGGACAGAAATTAAGAGGGAGTATGCTCTTCATTCAGTC AAAAAAAAATGCCATGTTTTAACAACTTGCTAATACGTTCCCCTTTGTAGAGCAATTACAAATGACAAGAATAATAACTGATGAGAAAGGAAGTGTTGTATTTTATCATCAAAACGACCATATCAGTCAGTAAGTATATGATGCATGTAACTTTTGAATGAATGGAACGGGGAAAACA]
[-] EMBL CD131941 [ AGAAGCATANTCATGACATACATGCATACATATACATTCAGTATGTATATAAGGGTCAAAAGTTC TAATTCTTACATTAAAATAGTATCTGTAATACCCATAGTAGTAGTAGAAGAAGACCAATACAGTCAGAATGAATATTACACAATCCAACTAACTTATTGTAAATGAAGAAGGGGGGAGACAGTAATTAAGAGGGAGTATGCTCTTCATTCAGTCAAAAAAAAAATGCCATGTTTTAACCACTTGCTAAAACG ]
consensusID : consensus_6533#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 352 fasta sequence
[CGAGANNGAGAGNAAGAAGGAGAAAGTGAAAAATGTAACTACATCACCAATTGAGAAACTTAATGTTAAATTGCACCATACTGGTTTACAACATATAAGAGAAATTAGATCAAAGAGATCAATGCATGCATACATACATACATCTTCCCATATATGTTTTACCGAGTTATTATTATTATTCAGAATATCTTGTATTGATTATCATGATCTTAGTTTCTATGACAACTAACAAATAATTGAACCTATCTACCATCAACTATACATGTTGACATTTTCATTTACGTTACTTACTTTACTTACTTACTTACTTACGCCTGTTACTCCTCGTGGAGGAGTATGGGCCGCTCGCTAG]
[-] EMBL CD198709 [CGAGANNGAGAGNAAGAAGGAGAAAGTGAAAAATGTAACTACATCACCAATTGAGAAACTTAATGTTAAATTGCACCATACTGGTTTACAACATATAAGAGAAATTAGATCAAAGAGATCAATGCATGCATACATACATACATCTTCCCATATATGTTTTACCGAGTTATTATTATTATTCAGAATATCTTGTATTGATTATCATGATCTTAGTTTCTATGACAACTAACAAATAATTGAACCTATCTACCATCAACTATACATGTTGACATTTTCATTTACGTTACTTACTTTACTTACTTACTTACTTACGCCTGTTACTCCTCGTGGAGGAGTATGGGCCGCTCGCTAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6533#0 TCCAATGGTTAGAACCCAAAAAKASAGGAAATTGAGGAAAACAAACGGAGGAGAAGAAGA 60
consensus_6533#1 ----------------------------------------------CGAGANNGAGAGNA 14
*** *** *
consensus_6533#0 AGAAGGAGAAAGTGAAAAAATGTAACTACATCACCAATTGAGAAACTTAATGTTAAATTG 120
consensus_6533#1 AGAAGGAGAAAGTGAAAAA-TGTAACTACATCACCAATTGAGAAACTTAATGTTAAATTG 73
******************* ****************************************
consensus_6533#0 CACCATACTGGMTTACAACATATAAGYGAAATTAGATCAAAGAGATCAATGCATGCATAC 180
consensus_6533#1 CACCATACTGGTTTACAACATATAAGAGAAATTAGATCAAAGAGATCAATGCATGCATAC 133
*********** ************** *********************************
consensus_6533#0 ATACATACACACACATACATATGCATAATCTAAAAATATTGCCTAAATTTACCAAACCAA 240
consensus_6533#1 ATACATACATCTTCCCATATATGTTTTACC--GAGTTATTATTATTATTCAGAATATCTT 191
********* * * ***** * * * * **** *** * * * *
consensus_6533#0 AAAACCGTATAGAATGATC--AATGAAAAAGAACAACAACAACACAACTATGAATGGATA 298
consensus_6533#1 GTATTGAT-TATCATGATCTTAGTTTCTATGACAACTAACAA-ATAATTGAACCTATCTA 249
* * ** ****** * * * ** * ***** * ** * * **
consensus_6533#0 TCACTAATTACTACTACGTCTTTACTAGATCTGATTTACGGAAGCAGAAGCATAAACATG 358
consensus_6533#1 CCATCAACTA----TACATGTTGAC--ATTTTCATTTACGTTACTTACTTTACTTAC-TT 302
** ** ** *** * ** ** * * ******* * * ** *
consensus_6533#0 ACATACATACATACATATACATTCAGTATGTATATAAGGGTCAAAAGTTCTAATTCTTAC 418
consensus_6533#1 ACTTACTTACGCCTGT-TACTCCTCGTGGAGGAGTATGGGCCGCTCGCTAG--------- 352
** *** *** * *** ** ** *** * * *
consensus_6533#0 ATTAAAATAGTATCTGTAATAACAATAGTAGTAGTAGAAGAAGAACAATACAGTCAGAAT 478
consensus_6533#1 ------------------------------------------------------------
consensus_6533#0 GAATATTACACAATCCAACTAACTTATTGTAAATGAAGAAGGGGGGGGACAGAAATTAAG 538
consensus_6533#1 ------------------------------------------------------------
consensus_6533#0 AGGGAGTATGCTCTTCATTCAGTCAAAAAAAAATGCCATGTTTTAACAACTTGCTAATAC 598
consensus_6533#1 ------------------------------------------------------------
consensus_6533#0 GTTCCCCTTTGTAGAGCAATTACAAATGACAAGAATAATAACTGATGAGAAAGGAAGTGT 658
consensus_6533#1 ------------------------------------------------------------
consensus_6533#0 TGTATTTTATCATCAAAACGACCATATCAGTCAGTAAGTATATGATGCATGTAACTTTTG 718
consensus_6533#1 ------------------------------------------------------------
consensus_6533#0 AATGAATGGAACGGGGAAAACA 740
consensus_6533#1 ----------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||