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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6536#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 675 fasta sequence
[TGTTTAAAGTTTTGCCATAACAAGTGGTTGTAGACTCATTACAATTACTTAAACCCCAGTGGCTGATTAACTTTTTTCTAATACTTCTGGGTGATATATTGTCAGTTATAACTGTTCATTTATACTTGAAAAATGACCATTGGTGTTATGGAAGAGCGTAATCAAGACG-CCACCATATATGTTGGTGGATTGGATGAAAAAGTTAACGAATCGATCCTATGGGAACTTTTTCTTCAGGCAGGACCAGTTGTCAATGTTCATATGCCTAAAGACCGAATAAACATGCAGCATCAGGGTTACGGATTTGTAGAGTTTATGACGGAAGAAGATGCCGACTATGCTATGCGTATTATGAATATGATTAAATTGTATGGGAAGCCTATTCGCGTAAACAAAGCATCAGCAAATCAGAAAAATCTTGATATAGGTGCTAATATTTTCATTGGCAACTTAGATCCTGAGGTAGATGAAAAGCTACTGTACGATACTTTCAGTGCATTTGGTGTTATACTACAAACTCCAAAAATTATGCGTGACCCTGAAACGGGGAATTCTAAAGGGTACGCGTTTATAAATTTTGCAAGTTTTGAAGCTAGTGATGCAGCAATTGAAGCGATGAACGGACAGTATCTTTGTAATCGAGCCCATCCACTATCTTCATATGCATTCAAAAAG]
[+] EMBL CD141964 [TGTTTAAAGTTTTGCCATAACAAGTGGTTGTAGACTCATTACAATTACTTAAACCCCAGTGGCTGATTAACTTTTTTCTAATACTTCTGGGTGATATATTGTCAGTTATAACTGTTCATTTATACTTGAAAAATGACCATTGGTGTTATGGAAGAGCGTAATCAAGACG CCACCATATATGTTGGTGGATTGGATGAAAAAGTTAACGAATCGATCCTATGGGAACTTTTTCTTCAGGCAGGACCAGTTGTCAA ]
[-] EMBL CD066220 [ TGGAAGAGCGTAATCAAGACGCCCACCATATATGTTGGTGGATTGGATGAAAAAGTTAACGAATCGATCCTATGGGAACTTTTTCTTCAGGCAGGACCAGTTGTCAATGTTCATATGCCTAAAGACCGAATAAACATGCAGCATCAGGGTTACGGATTTGTAGAGTTTATGACGGAAGAAGATGCCGACTATGCTATGCGTATTATGAATATGATTAAATTGTATGGGAAGCCTATTCGCGTAAACAAAGCATCAGCAAATCAGAAAAATCTTGATATAGGTGCTAATATTTTCATTGGCAACTTAGATCCTGAGGTAGATGAAAAGCTACTGTACGATACTTTCAGTGCATTTGGTGTTATACTACAAACTCCAAAAATTATGCGTGACCCTGAAACGGGGAATTCTAAAGGGTACGCGTTTATAAATTTTGCAAGTTTTGAAGCTAGTGATGCAGCAATTGAAGCGATGAACGGACAGTATCTTTGTAATCGAGCCCATCCACTATCTTCATATGCATTCAAAAAG]
consensusID : consensus_6536#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 556 fasta sequence
[CGGTACCCTGGTCTAGGTGGNAAATCACGGACGCCACCATATATGTTGGTGGATTGGATGAAAAAGTTAACGAATCGATCCTATGGGAACTTTTTCTTCAGGCAGGACCAGTTGTCAATGTTCATATGCCTAAAGACCGAATAAACATGCAGCATCAGGGTTACGGATTTGTAGAGTTTATGACGGAAGAAGATGCCGACTATGCTATGCGTATTATGAATATGATTAAATTGTATGGGAAGCCTATTCGCGTAAACAAAGCATCAGCAAATCAGAAAAATCTTGATATAGGTGCTAATATTTTCATTGGCAACTTAGATCCTGAGGTAGATGAAAAGCTACTGTACGATACTTTCAGTGCATTTGGTGTTATACTACAAACTCCAAAAATTATGCGCGACCCTGAAACGGGGAATTCTAAAGGGTGCGCGTTTATAAATTTTGCAAGTTTTGAAGCTAGTGATGCAGCAATTGAAGCGATGAACGGACAGTATCTTTGTAATCGAGCCATCACTATCTCATATGCATTCAAAAAGGACAGTAAAGGTGAACGCCA]
[+] EMBL CD129304 [CGGTACCCTGGTCTAGGTGGNAAATCACGGACGCCACCATATATGTTGGTGGATTGGATGAAAAAGTTAACGAATCGATCCTATGGGAACTTTTTCTTCAGGCAGGACCAGTTGTCAATGTTCATATGCCTAAAGACCGAATAAACATGCAGCATCAGGGTTACGGATTTGTAGAGTTTATGACGGAAGAAGATGCCGACTATGCTATGCGTATTATGAATATGATTAAATTGTATGGGAAGCCTATTCGCGTAAACAAAGCATCAGCAAATCAGAAAAATCTTGATATAGGTGCTAATATTTTCATTGGCAACTTAGATCCTGAGGTAGATGAAAAGCTACTGTACGATACTTTCAGTGCATTTGGTGTTATACTACAAACTCCAAAAATTATGCGCGACCCTGAAACGGGGAATTCTAAAGGGTGCGCGTTTATAAATTTTGCAAGTTTTGAAGCTAGTGATGCAGCAATTGAAGCGATGAACGGACAGTATCTTTGTAATCGAGCCATCACTATCTCATATGCATTCAAAAAGGACAGTAAAGGTGAACGCCA]
[+] EMBL CD067334 [ gggAGGTGG AGATCA GGACGCCACCATATATGTTGGTGGATTGGATGAAAAAGTTAACGAATCGATCCTATTGGAACTTTTTCTTCAGG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6536#0 TGTTTAAAGTTTTGCCATAACAAGTGGTTGTAGACTCATTACAATTACTTAAACCCCAGT 60
consensus_6536#1 ------------------------------------------------------------
consensus_6536#0 GGCTGATTAACTTTTTTCTAATACTTCTGGGTGATATATTGTCAGTTATAACTGTTCATT 120
consensus_6536#1 ------------------------------------------------------------
consensus_6536#0 TATACTTGAAAAATGACCATTGGTGTTATGGAAGAGCGTAATCA-AGACGCCACCATATA 179
consensus_6536#1 -----------------CGGTACCCTGGTCTAGGTGGNAAATCACGGACGCCACCATATA 43
* * * * * * * ***** **************
consensus_6536#0 TGTTGGTGGATTGGATGAAAAAGTTAACGAATCGATCCTATGGGAACTTTTTCTTCAGGC 239
consensus_6536#1 TGTTGGTGGATTGGATGAAAAAGTTAACGAATCGATCCTATGGGAACTTTTTCTTCAGGC 103
************************************************************
consensus_6536#0 AGGACCAGTTGTCAATGTTCATATGCCTAAAGACCGAATAAACATGCAGCATCAGGGTTA 299
consensus_6536#1 AGGACCAGTTGTCAATGTTCATATGCCTAAAGACCGAATAAACATGCAGCATCAGGGTTA 163
************************************************************
consensus_6536#0 CGGATTTGTAGAGTTTATGACGGAAGAAGATGCCGACTATGCTATGCGTATTATGAATAT 359
consensus_6536#1 CGGATTTGTAGAGTTTATGACGGAAGAAGATGCCGACTATGCTATGCGTATTATGAATAT 223
************************************************************
consensus_6536#0 GATTAAATTGTATGGGAAGCCTATTCGCGTAAACAAAGCATCAGCAAATCAGAAAAATCT 419
consensus_6536#1 GATTAAATTGTATGGGAAGCCTATTCGCGTAAACAAAGCATCAGCAAATCAGAAAAATCT 283
************************************************************
consensus_6536#0 TGATATAGGTGCTAATATTTTCATTGGCAACTTAGATCCTGAGGTAGATGAAAAGCTACT 479
consensus_6536#1 TGATATAGGTGCTAATATTTTCATTGGCAACTTAGATCCTGAGGTAGATGAAAAGCTACT 343
************************************************************
consensus_6536#0 GTACGATACTTTCAGTGCATTTGGTGTTATACTACAAACTCCAAAAATTATGCGTGACCC 539
consensus_6536#1 GTACGATACTTTCAGTGCATTTGGTGTTATACTACAAACTCCAAAAATTATGCGCGACCC 403
****************************************************** *****
consensus_6536#0 TGAAACGGGGAATTCTAAAGGGTACGCGTTTATAAATTTTGCAAGTTTTGAAGCTAGTGA 599
consensus_6536#1 TGAAACGGGGAATTCTAAAGGGTGCGCGTTTATAAATTTTGCAAGTTTTGAAGCTAGTGA 463
*********************** ************************************
consensus_6536#0 TGCAGCAATTGAAGCGATGAACGGACAGTATCTTTGTAATCGAGCCCATCCACTATCTTC 659
consensus_6536#1 TGCAGCAATTGAAGCGATGAACGGACAGTATCTTTGTAATCGAGCC--ATCACTATCT-C 520
********************************************** ******** *
consensus_6536#0 ATATGCATTCAAAAAG-------------------- 675
consensus_6536#1 ATATGCATTCAAAAAGGACAGTAAAGGTGAACGCCA 556
****************
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||