cluster # 6546

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Schistosoma mansoni
cluster # 6546 cluster # 6546 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6546#0 length = 469 sequences # 2

consensus_6546#1 length = 424 sequences # 1
consensus_6546#2 length = 418 sequences # 1

consensusID : consensus_6546#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 469
fasta sequence

                              [TCAGAATCCTCCAATGATGAACTAGATGATTCATTCCATTCTCTTGGATTTTCATAAATACAACAACAACTTGACTTTTTTTACCCATACATTCATTATCTATTGTACCTTCCGCCCAATGGATTGCTGGACCATGACTAGAAGAAGGTAGAGTATTTTCATTATCAACTGTTTGAGCATGGCTAGTTCCCCGTATTAATAGAGGCTGATTGACATCAGCAACTGTAGCTGGTTGTTCCTCTCTTTCTGCTTTTACATTTGTTCTTAATTCCGTGGCCATGAAGCTAATTAAATATTCATCAAGTTGATGTGAAGGTACCAACTGCTTGTGTATGTCTGTTAGATAGAAAAATCAACATAGTTATGGCAGACCAAGAACGAACAAAACTTAATAATTGGAACGACCATTTGTTGAAATAGCACTTTTGGTTGTGGACAAGTGGGAGTGGAGATTTCCAAATCGTTATGT]

[+] EMBL CD066561             [TCAGAATCCTCCAATGATGAACTAGATGATTCATTCCATTCTCTTGGATTTTCATAAATACAACAACAACTTGACTTTTTTTACCCATACATTCATTATCTATTGTACCTTCCGCCCAATGGATTGC                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD066560             [   GAATCATCCGATGATGAACTAGATGATTCATTCCATTTTCTTGGTTTTTCATAAATACAACAACAACTTGACTTTTTTTACCCATAAATTCATTATCTATTGTACCTTCAGCCCAATGGATTGCTGGACCATGACTAGAAGAAGGTAGAGTATTTTCATTATCAACTGTTTGAGCATGGCTAGTTCCCCGTATTAATAGAGGCTGATTGACATCAGCAACTGTAGCTGGTTGTTCCTCTCTTTCTGCTTTTACATTTGTTCTTAATTCCGTGGCCATGAAGCTAATTAAATATTCATCAAGTTGATGTGAAGGTACCAACTGCTTGTGTATGTCTGTTAGATAGAAAAATCAACATAGTTATGGCAGACCAAGAACGAACAAAACTTAATAATTGGAACGACCATTTGTTGAAATAGCACTTTTGGTTGTGGACAAGTGGGAGTGGAGATTTCCAAATCGTTATGT]




>consensus_6546#0
TCAGAATCCTCCAATGATGAACTAGATGATTCATTCCATTCTCTTGGATTTTCATAAATA
CAACAACAACTTGACTTTTTTTACCCATACATTCATTATCTATTGTACCTTCCGCCCAAT
GGATTGCTGGACCATGACTAGAAGAAGGTAGAGTATTTTCATTATCAACTGTTTGAGCAT
GGCTAGTTCCCCGTATTAATAGAGGCTGATTGACATCAGCAACTGTAGCTGGTTGTTCCT
CTCTTTCTGCTTTTACATTTGTTCTTAATTCCGTGGCCATGAAGCTAATTAAATATTCAT
CAAGTTGATGTGAAGGTACCAACTGCTTGTGTATGTCTGTTAGATAGAAAAATCAACATA
GTTATGGCAGACCAAGAACGAACAAAACTTAATAATTGGAACGACCATTTGTTGAAATAG
CACTTTTGGTTGTGGACAAGTGGGAGTGGAGATTTCCAAATCGTTATGT

consensusID : consensus_6546#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 424
fasta sequence

                              [TCTACAATTTTCTGTACAATGTGTATGTTTATTTGTATTTTGTTTGTTTGTATCATCATNATCATCAGGAGAAGGATCAGAATCATCCGATGATGAACTAGATGATTCATTCCATTTTCTTGGTTTTTCATAAATACAACAACAACTTGACTTTTTTTTACCCATAAATTCATTATCTATTGTACCTTCAGCCCAATGGATTGCTGGACCATGACTAGAAGAAGGTAGAGTATTTTCATTATCAACTGTTTGAGCATGGCTAGTTCCCCGTATTAATAGAGGCTGATTGACATCAGCAACTGTAGCTGGTTGTTCCTCTCTTTCTGCTTTTACATTTGTTCTTAATTCCGTGGCCATGAAGCTAATTAAATATTCATCAAGTTATGTGAAGGTACCAACTGCTTGTGTACCTCGTGCCGATTCT]

[-] EMBL CD083886             [TCTACAATTTTCTGTACAATGTGTATGTTTATTTGTATTTTGTTTGTTTGTATCATCATNATCATCAGGAGAAGGATCAGAATCATCCGATGATGAACTAGATGATTCATTCCATTTTCTTGGTTTTTCATAAATACAACAACAACTTGACTTTTTTTTACCCATAAATTCATTATCTATTGTACCTTCAGCCCAATGGATTGCTGGACCATGACTAGAAGAAGGTAGAGTATTTTCATTATCAACTGTTTGAGCATGGCTAGTTCCCCGTATTAATAGAGGCTGATTGACATCAGCAACTGTAGCTGGTTGTTCCTCTCTTTCTGCTTTTACATTTGTTCTTAATTCCGTGGCCATGAAGCTAATTAAATATTCATCAAGTTATGTGAAGGTACCAACTGCTTGTGTACCTCGTGCCGATTCT]




>consensus_6546#1
TCTACAATTTTCTGTACAATGTGTATGTTTATTTGTATTTTGTTTGTTTGTATCATCATN
ATCATCAGGAGAAGGATCAGAATCATCCGATGATGAACTAGATGATTCATTCCATTTTCT
TGGTTTTTCATAAATACAACAACAACTTGACTTTTTTTTACCCATAAATTCATTATCTAT
TGTACCTTCAGCCCAATGGATTGCTGGACCATGACTAGAAGAAGGTAGAGTATTTTCATT
ATCAACTGTTTGAGCATGGCTAGTTCCCCGTATTAATAGAGGCTGATTGACATCAGCAAC
TGTAGCTGGTTGTTCCTCTCTTTCTGCTTTTACATTTGTTCTTAATTCCGTGGCCATGAA
GCTAATTAAATATTCATCAAGTTATGTGAAGGTACCAACTGCTTGTGTACCTCGTGCCGA
TTCT

consensusID : consensus_6546#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 418
fasta sequence

                              [TAACCCACACAAGTCCTACAGCCCATTTGTCGGATATTTTGGAATAAATATCATGTGAATATAGTTCTGGATTTTTTTCTCATATTTCGAAATCACCAGGAGACTATTCAATAGAAAATTTGAAGTACTTTTTGACCTGATTGACATCAGCAACTGTAGCTGGTTGTTCCTCTCTTTCTGCTTTTACATTTGTTCTTAATTCCGTGGCCATGAAGCTAATTAAATATTCATCAAGTTGATGTGAAGGTACCAACTGCTTGTGTATGTCTGTAAGATAGAAAAATCAACATAGTTATGGCAGACCAAGAACGAACAAAACTTAATAATTGGAACGACCATTTGTTGAAATAGCACTTTTGGTTGTGGACAAGTGGGAGTGGAGATTTCGAAATCGTTATGTAGAGGAGTGGCATTTTAA]

[-] EMBL CD159521             [TAACCCACACAAGTCCTACAGCCCATTTGTCGGATATTTTGGAATAAATATCATGTGAATATAGTTCTGGATTTTTTTCTCATATTTCGAAATCACCAGGAGACTATTCAATAGAAAATTTGAAGTACTTTTTGACCTGATTGACATCAGCAACTGTAGCTGGTTGTTCCTCTCTTTCTGCTTTTACATTTGTTCTTAATTCCGTGGCCATGAAGCTAATTAAATATTCATCAAGTTGATGTGAAGGTACCAACTGCTTGTGTATGTCTGTAAGATAGAAAAATCAACATAGTTATGGCAGACCAAGAACGAACAAAACTTAATAATTGGAACGACCATTTGTTGAAATAGCACTTTTGGTTGTGGACAAGTGGGAGTGGAGATTTCGAAATCGTTATGTAGAGGAGTGGCATTTTAA]




>consensus_6546#2
TAACCCACACAAGTCCTACAGCCCATTTGTCGGATATTTTGGAATAAATATCATGTGAAT
ATAGTTCTGGATTTTTTTCTCATATTTCGAAATCACCAGGAGACTATTCAATAGAAAATT
TGAAGTACTTTTTGACCTGATTGACATCAGCAACTGTAGCTGGTTGTTCCTCTCTTTCTG
CTTTTACATTTGTTCTTAATTCCGTGGCCATGAAGCTAATTAAATATTCATCAAGTTGAT
GTGAAGGTACCAACTGCTTGTGTATGTCTGTAAGATAGAAAAATCAACATAGTTATGGCA
GACCAAGAACGAACAAAACTTAATAATTGGAACGACCATTTGTTGAAATAGCACTTTTGG
TTGTGGACAAGTGGGAGTGGAGATTTCGAAATCGTTATGTAGAGGAGTGGCATTTTAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6546#0      ------------------------------------------------------------
consensus_6546#1      TCTACAATTTTCTGTACAATGTGTATGTTTATTTGTATTTTGTTTGTTTGTATCATCATN 60
consensus_6546#2      ------------------------------------------------------------
                                                                                  

consensus_6546#0      ----------------TCAGAATCCTCCAATGATGAACTAGATGATTCATTCCATTCTCT 44
consensus_6546#1      ATCATCAGGAGAAGGATCAGAATCATCCGATGATGAACTAGATGATTCATTCCATTTTCT 120
consensus_6546#2      ------------------------------------------------------------
                                                                                  

consensus_6546#0      TGGATTTTCATAAATACAACAACA-ACTTGACTTTTTTT-ACCCATACATTCATTATCTA 102
consensus_6546#1      TGGTTTTTCATAAATACAACAACA-ACTTGACTTTTTTTTACCCATAAATTCATTATCTA 179
consensus_6546#2      -TAACCCACACAAGTCCTACAGCCCATTTGTCGGATATTTTGGAATAAAT--ATCAT--- 54
                              ** ** * * *** *  * *** *   * **     *** **  ** **   

consensus_6546#0      TTGTACCTTCCGCCCAATGGATTGCTGGACCATGACTAGAAGAAGGTAGAGTATTTTCAT 162
consensus_6546#1      TTGTACCTTCAGCCCAATGGATTGCTGGACCATGACTAGAAGAAGGTAGAGTATTTTCAT 239
consensus_6546#2      --GTGAATATAGTTC--TGGATTTTTTTCTCATATTTCGAAATCACCAGGA--------- 101
                        **   *   *  *  ******  *    ***   * ***      **           

consensus_6546#0      TATCAACTGTTTGAGCATGGCTAGTTCCCCGTATTAATAGAGGCTGATTGACATCAGCAA 222
consensus_6546#1      TATCAACTGTTTGAGCATGGCTAGTTCCCCGTATTAATAGAGGCTGATTGACATCAGCAA 299
consensus_6546#2      ----GACTATTCAA---TAGAAAATTTGAAGTACTTTTTGAC-CTGATTGACATCAGCAA 153
                           *** **  *   * *  * **    *** *  * **  *****************

consensus_6546#0      CTGTAGCTGGTTGTTCCTCTCTTTCTGCTTTTACATTTGTTCTTAATTCCGTGGCCATGA 282
consensus_6546#1      CTGTAGCTGGTTGTTCCTCTCTTTCTGCTTTTACATTTGTTCTTAATTCCGTGGCCATGA 359
consensus_6546#2      CTGTAGCTGGTTGTTCCTCTCTTTCTGCTTTTACATTTGTTCTTAATTCCGTGGCCATGA 213
                      ************************************************************

consensus_6546#0      AGCTAATTAAATATTCATCAAGTTGATGTGAAGGTACCAACTGCTTGTGTATGTCTGTTA 342
consensus_6546#1      AGCTAATTAAATATTCATCAAGTT-ATGTGAAGGTACCAACTGCTTGTGTACCTCGTGCC 418
consensus_6546#2      AGCTAATTAAATATTCATCAAGTTGATGTGAAGGTACCAACTGCTTGTGTATGTCTGTAA 273
                      ************************ **************************  **     

consensus_6546#0      GATAGAAAAATCAACATAGTTATGGCAGACCAAGAACGAACAAAACTTAATAATTGGAAC 402
consensus_6546#1      GATTCT------------------------------------------------------ 424
consensus_6546#2      GATAGAAAAATCAACATAGTTATGGCAGACCAAGAACGAACAAAACTTAATAATTGGAAC 333
                      ***                                                         

consensus_6546#0      GACCATTTGTTGAAATAGCACTTTTGGTTGTGGACAAGTGGGAGTGGAGATTTCCAAATC 462
consensus_6546#1      ------------------------------------------------------------
consensus_6546#2      GACCATTTGTTGAAATAGCACTTTTGGTTGTGGACAAGTGGGAGTGGAGATTTCGAAATC 393
                                                                                  

consensus_6546#0      GTTATGT------------------ 469
consensus_6546#1      -------------------------
consensus_6546#2      GTTATGTAGAGGAGTGGCATTTTAA 418