These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6546#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 469 fasta sequence [TCAGAATCCTCCAATGATGAACTAGATGATTCATTCCATTCTCTTGGATTTTCATAAATACAACAACAACTTGACTTTTTTTACCCATACATTCATTATCTATTGTACCTTCCGCCCAATGGATTGCTGGACCATGACTAGAAGAAGGTAGAGTATTTTCATTATCAACTGTTTGAGCATGGCTAGTTCCCCGTATTAATAGAGGCTGATTGACATCAGCAACTGTAGCTGGTTGTTCCTCTCTTTCTGCTTTTACATTTGTTCTTAATTCCGTGGCCATGAAGCTAATTAAATATTCATCAAGTTGATGTGAAGGTACCAACTGCTTGTGTATGTCTGTTAGATAGAAAAATCAACATAGTTATGGCAGACCAAGAACGAACAAAACTTAATAATTGGAACGACCATTTGTTGAAATAGCACTTTTGGTTGTGGACAAGTGGGAGTGGAGATTTCCAAATCGTTATGT] [+] EMBL CD066561 [TCAGAATCCTCCAATGATGAACTAGATGATTCATTCCATTCTCTTGGATTTTCATAAATACAACAACAACTTGACTTTTTTTACCCATACATTCATTATCTATTGTACCTTCCGCCCAATGGATTGC ] [+] EMBL CD066560 [ GAATCATCCGATGATGAACTAGATGATTCATTCCATTTTCTTGGTTTTTCATAAATACAACAACAACTTGACTTTTTTTACCCATAAATTCATTATCTATTGTACCTTCAGCCCAATGGATTGCTGGACCATGACTAGAAGAAGGTAGAGTATTTTCATTATCAACTGTTTGAGCATGGCTAGTTCCCCGTATTAATAGAGGCTGATTGACATCAGCAACTGTAGCTGGTTGTTCCTCTCTTTCTGCTTTTACATTTGTTCTTAATTCCGTGGCCATGAAGCTAATTAAATATTCATCAAGTTGATGTGAAGGTACCAACTGCTTGTGTATGTCTGTTAGATAGAAAAATCAACATAGTTATGGCAGACCAAGAACGAACAAAACTTAATAATTGGAACGACCATTTGTTGAAATAGCACTTTTGGTTGTGGACAAGTGGGAGTGGAGATTTCCAAATCGTTATGT] consensusID : consensus_6546#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 424 fasta sequence [TCTACAATTTTCTGTACAATGTGTATGTTTATTTGTATTTTGTTTGTTTGTATCATCATNATCATCAGGAGAAGGATCAGAATCATCCGATGATGAACTAGATGATTCATTCCATTTTCTTGGTTTTTCATAAATACAACAACAACTTGACTTTTTTTTACCCATAAATTCATTATCTATTGTACCTTCAGCCCAATGGATTGCTGGACCATGACTAGAAGAAGGTAGAGTATTTTCATTATCAACTGTTTGAGCATGGCTAGTTCCCCGTATTAATAGAGGCTGATTGACATCAGCAACTGTAGCTGGTTGTTCCTCTCTTTCTGCTTTTACATTTGTTCTTAATTCCGTGGCCATGAAGCTAATTAAATATTCATCAAGTTATGTGAAGGTACCAACTGCTTGTGTACCTCGTGCCGATTCT] [-] EMBL CD083886 [TCTACAATTTTCTGTACAATGTGTATGTTTATTTGTATTTTGTTTGTTTGTATCATCATNATCATCAGGAGAAGGATCAGAATCATCCGATGATGAACTAGATGATTCATTCCATTTTCTTGGTTTTTCATAAATACAACAACAACTTGACTTTTTTTTACCCATAAATTCATTATCTATTGTACCTTCAGCCCAATGGATTGCTGGACCATGACTAGAAGAAGGTAGAGTATTTTCATTATCAACTGTTTGAGCATGGCTAGTTCCCCGTATTAATAGAGGCTGATTGACATCAGCAACTGTAGCTGGTTGTTCCTCTCTTTCTGCTTTTACATTTGTTCTTAATTCCGTGGCCATGAAGCTAATTAAATATTCATCAAGTTATGTGAAGGTACCAACTGCTTGTGTACCTCGTGCCGATTCT] consensusID : consensus_6546#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 418 fasta sequence [TAACCCACACAAGTCCTACAGCCCATTTGTCGGATATTTTGGAATAAATATCATGTGAATATAGTTCTGGATTTTTTTCTCATATTTCGAAATCACCAGGAGACTATTCAATAGAAAATTTGAAGTACTTTTTGACCTGATTGACATCAGCAACTGTAGCTGGTTGTTCCTCTCTTTCTGCTTTTACATTTGTTCTTAATTCCGTGGCCATGAAGCTAATTAAATATTCATCAAGTTGATGTGAAGGTACCAACTGCTTGTGTATGTCTGTAAGATAGAAAAATCAACATAGTTATGGCAGACCAAGAACGAACAAAACTTAATAATTGGAACGACCATTTGTTGAAATAGCACTTTTGGTTGTGGACAAGTGGGAGTGGAGATTTCGAAATCGTTATGTAGAGGAGTGGCATTTTAA] [-] EMBL CD159521 [TAACCCACACAAGTCCTACAGCCCATTTGTCGGATATTTTGGAATAAATATCATGTGAATATAGTTCTGGATTTTTTTCTCATATTTCGAAATCACCAGGAGACTATTCAATAGAAAATTTGAAGTACTTTTTGACCTGATTGACATCAGCAACTGTAGCTGGTTGTTCCTCTCTTTCTGCTTTTACATTTGTTCTTAATTCCGTGGCCATGAAGCTAATTAAATATTCATCAAGTTGATGTGAAGGTACCAACTGCTTGTGTATGTCTGTAAGATAGAAAAATCAACATAGTTATGGCAGACCAAGAACGAACAAAACTTAATAATTGGAACGACCATTTGTTGAAATAGCACTTTTGGTTGTGGACAAGTGGGAGTGGAGATTTCGAAATCGTTATGTAGAGGAGTGGCATTTTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6546#0 ------------------------------------------------------------ consensus_6546#1 TCTACAATTTTCTGTACAATGTGTATGTTTATTTGTATTTTGTTTGTTTGTATCATCATN 60 consensus_6546#2 ------------------------------------------------------------ consensus_6546#0 ----------------TCAGAATCCTCCAATGATGAACTAGATGATTCATTCCATTCTCT 44 consensus_6546#1 ATCATCAGGAGAAGGATCAGAATCATCCGATGATGAACTAGATGATTCATTCCATTTTCT 120 consensus_6546#2 ------------------------------------------------------------ consensus_6546#0 TGGATTTTCATAAATACAACAACA-ACTTGACTTTTTTT-ACCCATACATTCATTATCTA 102 consensus_6546#1 TGGTTTTTCATAAATACAACAACA-ACTTGACTTTTTTTTACCCATAAATTCATTATCTA 179 consensus_6546#2 -TAACCCACACAAGTCCTACAGCCCATTTGTCGGATATTTTGGAATAAAT--ATCAT--- 54 ** ** * * *** * * *** * * ** *** ** ** ** consensus_6546#0 TTGTACCTTCCGCCCAATGGATTGCTGGACCATGACTAGAAGAAGGTAGAGTATTTTCAT 162 consensus_6546#1 TTGTACCTTCAGCCCAATGGATTGCTGGACCATGACTAGAAGAAGGTAGAGTATTTTCAT 239 consensus_6546#2 --GTGAATATAGTTC--TGGATTTTTTTCTCATATTTCGAAATCACCAGGA--------- 101 ** * * * ****** * *** * *** ** consensus_6546#0 TATCAACTGTTTGAGCATGGCTAGTTCCCCGTATTAATAGAGGCTGATTGACATCAGCAA 222 consensus_6546#1 TATCAACTGTTTGAGCATGGCTAGTTCCCCGTATTAATAGAGGCTGATTGACATCAGCAA 299 consensus_6546#2 ----GACTATTCAA---TAGAAAATTTGAAGTACTTTTTGAC-CTGATTGACATCAGCAA 153 *** ** * * * * ** *** * * ** ***************** consensus_6546#0 CTGTAGCTGGTTGTTCCTCTCTTTCTGCTTTTACATTTGTTCTTAATTCCGTGGCCATGA 282 consensus_6546#1 CTGTAGCTGGTTGTTCCTCTCTTTCTGCTTTTACATTTGTTCTTAATTCCGTGGCCATGA 359 consensus_6546#2 CTGTAGCTGGTTGTTCCTCTCTTTCTGCTTTTACATTTGTTCTTAATTCCGTGGCCATGA 213 ************************************************************ consensus_6546#0 AGCTAATTAAATATTCATCAAGTTGATGTGAAGGTACCAACTGCTTGTGTATGTCTGTTA 342 consensus_6546#1 AGCTAATTAAATATTCATCAAGTT-ATGTGAAGGTACCAACTGCTTGTGTACCTCGTGCC 418 consensus_6546#2 AGCTAATTAAATATTCATCAAGTTGATGTGAAGGTACCAACTGCTTGTGTATGTCTGTAA 273 ************************ ************************** ** consensus_6546#0 GATAGAAAAATCAACATAGTTATGGCAGACCAAGAACGAACAAAACTTAATAATTGGAAC 402 consensus_6546#1 GATTCT------------------------------------------------------ 424 consensus_6546#2 GATAGAAAAATCAACATAGTTATGGCAGACCAAGAACGAACAAAACTTAATAATTGGAAC 333 *** consensus_6546#0 GACCATTTGTTGAAATAGCACTTTTGGTTGTGGACAAGTGGGAGTGGAGATTTCCAAATC 462 consensus_6546#1 ------------------------------------------------------------ consensus_6546#2 GACCATTTGTTGAAATAGCACTTTTGGTTGTGGACAAGTGGGAGTGGAGATTTCGAAATC 393 consensus_6546#0 GTTATGT------------------ 469 consensus_6546#1 ------------------------- consensus_6546#2 GTTATGTAGAGGAGTGGCATTTTAA 418 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||