cluster # 6547

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 6547 cluster # 6547 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6547#0 length = 700 sequences # 2

consensus_6547#1 length = 645 sequences # 2

consensusID : consensus_6547#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 700
fasta sequence

                              [TTATGGCTTTGTTTAAGTGATCTTCATCCGGAACAAGATCGCAGTGTTGTTGAATGCGTGATAAGAAATCGTGCTGGAAAATCAAGAACAAAAGCACGGCTTTTATTTAGTGATATGCCGAAACCCCCTGGTCGACCAGGTCTTATCGATATTCGTCCTACAGAAGCATTGATTAGTTGGCTCTCTTCAACGTCGGATTCGAATGAAGATCTGATTTATCGCCTTGATATCAAATATTCAGACCGTGATAATGAACCACCTTCATGGCATCGGCTTGGATTCACAGTAGATTGTCGTTATCTTATTAATAATCTTAAACCT-GGTGTATATTATCGTGTCCGTGTATCCGCTAGAAATGCATTCGGTTGGGGCAATTACAGCATTGCATCTTCTGGTTTCCGTACACCTATCGTTTCTATGGATCAGTCATCAACTATTCTATCACCCAATGAACGAAAATGGATCTTCAACTGGCGTCAATCAGAAAATATCTACGCATTAAGCGATCATCCAATAGCTTTACAATATGCAATCGATCAGTCAATCAATGTACCTCCACCGTCAGACAAAATTTTACAGAAACTTAATCGATATAATGGGATAATTCCAAGTTTAGATGTATTAAAATCCATATGTAGACCAATTCGTCTGATCAATAAGGGAACATATACAAAACTTATTCTTGGAAAAACTCATCCAA]

[+] EMBL CD066601             [TTATGGCTTTGTTTAAGTGATCTTCATCCGGAACAAGATCGCAGTGTTGTTGAATGCGTGATAAGAAATCGTGCTGGAAAATCAAGAACAAAAGCACGGCTTTTATTTAGTGATATGCCGAAACCCCCTGGTCGACCAGGTCTTATCGATATTCGTCCTACAGAAGCATTGATTAGTTGGCTCTCTTCAACGTCGGATTCGAATGAAGATCTGATTTATCGCCTTGATATCAAATATTCAGACCGTGATAATGAACCACCTTCATGGCATCGGCTTGGATTCACAGTAGATTGTCGTTATCTTATTAATAATCTTAAACCT GGTGTATATTATCGTGTCCGTGTATCCGCTAGAAATGCATTCGGTTGGG                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CD190578             [                                                                                                                                                                                                                                                                CACCTTCAGGGCATCGGCTTGGATTCACAGTAAAATGTCGTTATCTTATTAATAATCTT AACCTGGGTGTATATAATCGTGCCCGTGTATCCGCTAGAAATGCATTCGGTTGGGGCAATTACAGCATTGCATCTTCTGGTTTCCGTACACCTATCGTTTCTATGGATCAGTCATCAACTATTCTATCACCCAATGAACGAAAATGGATCTTCAACTGGCGTCAATCAGAAAATATCTACGCATTAAGCGATCATCCAATAGCTTTACAATATGCAATCGATCAGTCAATCAATGTACCTCCACCGTCAGACAAAATTTTACAGAAACTTAATCGATATAATGGGATAATTCCAAGTTTAGATGTATTAAAATCCATATGTAGACCAATTCGTCTGATCAATAAGGGAACATATACAAAACTTATTCTTGGAAAAACTCATCCAA]




>consensus_6547#0
TTATGGCTTTGTTTAAGTGATCTTCATCCGGAACAAGATCGCAGTGTTGTTGAATGCGTG
ATAAGAAATCGTGCTGGAAAATCAAGAACAAAAGCACGGCTTTTATTTAGTGATATGCCG
AAACCCCCTGGTCGACCAGGTCTTATCGATATTCGTCCTACAGAAGCATTGATTAGTTGG
CTCTCTTCAACGTCGGATTCGAATGAAGATCTGATTTATCGCCTTGATATCAAATATTCA
GACCGTGATAATGAACCACCTTCATGGCATCGGCTTGGATTCACAGTAGATTGTCGTTAT
CTTATTAATAATCTTAAACCTGGTGTATATTATCGTGTCCGTGTATCCGCTAGAAATGCA
TTCGGTTGGGGCAATTACAGCATTGCATCTTCTGGTTTCCGTACACCTATCGTTTCTATG
GATCAGTCATCAACTATTCTATCACCCAATGAACGAAAATGGATCTTCAACTGGCGTCAA
TCAGAAAATATCTACGCATTAAGCGATCATCCAATAGCTTTACAATATGCAATCGATCAG
TCAATCAATGTACCTCCACCGTCAGACAAAATTTTACAGAAACTTAATCGATATAATGGG
ATAATTCCAAGTTTAGATGTATTAAAATCCATATGTAGACCAATTCGTCTGATCAATAAG
GGAACATATACAAAACTTATTCTTGGAAAAACTCATCCAA

consensusID : consensus_6547#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 645
fasta sequence

                              [AACATATACAAAACTTATTCTTGGAAAAACTCATCCAATGTTAAATGAAGGAGCGAATTTCAATAATGTTCGACATCAAAACATATCTCTTCCACCTAGATTACTAAGTAAAATCACATATCTTAATTTAGAAGACAATAATCTACTGAAAAAAGCTCGTCGTGAAGCACTAATGCTTACTATTCTTCATGGATCTTGTGGTGGAATATATTCTTCATTTGAAGATTATTATAATGAACAACATAACTCATATCTTTTCACTAATCAACGACAATTATTACCATCTGGTTGGTCAACTGGTTGGTTAGAAGATGATGCAGTTAAACCGACACGAAGTATAACAGTAATGCAGTGGATTCCTGGTGGACGTCTTATTGATGTTTTGTGCAGTCGAGTAGAATATACTGAATTTTCTGTTATGATGTGGAGTCAACAGATTCTTTCAGCGTTAAAATGGTTCTACACATGCTTTTTAGGACGATCACATGGAAATATTTGTCCGGAGCATATACTTGTTGCACGACGAGCATCTTCGCTCCCAGATATTGTATTGACTGGGTTCGGTCATGAATCTGATTCAGATGAAACCAACAACTACTTTTCAGCTCCCGAGTTACGCAAGAATCAGCCAAAATCAATGGCGTC]

[+] EMBL CD117311             [AACATATACAAAACTTATTCTTGGAAAAACTCATCCAATGTTAAATGAAGGAGCGAATTTCAATAATGTTCGACATCAAAACATATCTCTTCCACCTAGATTACTAAGTAAAATCACATATCTTAATTTAGAAGACAATAATCTACTGAAAAAAGCTCGTCGTGAAGCACTAATGCTTACTATTCTTCATGGATCTTGTGGTGGAATATATTCTTCATTTGAAGATTATTATAATGAACAACATAACTCATATCTTTTCACTAATCAACGACAATTATTACCATCTGGTTGGTCAACTGGTTGGTTAGAAGATGATGCAGTTAAACCGACACGAAGTATAACAGTAATGCAGTGGATTCCTGGTGGACGTCTTATTGATGTTTTGTGCAGTCGAGTAGAATATACTGAATTTTCTGTTATGATGTGGAGTCAACAGATTCTTTCAGCGTTAAAATGGTTCTACACATGCTTTTTAGGACGATCACATGGAAATATTTGTCCGGAGCATATACTTGTTGCACGACGAGCATCTTCGCTCCCAGATATTGTATTGACTGGGTTCGGTCATGAATCTGATTCAGATGAAACCAACAACTACTTTTCAGCTCCCGAGTTACGCAAGAATCAGCCAAAATCAATGGCGTC]
[+] EMBL CD117165             [AACATATACAAAACTTATTCTTGGAAAAACTCATCCAATGTTAAATGAAGGAGCGAATTTCAATAATGTTCGACATCAAAACATATCTCTTCCACCTAGATTACTAAGTAAAATCACATATCTTAATTTAGAAGACAATAATCTACTGAAAAAAGCTCGTCGTGAAGCACTAATGCTTACTATTCTTCATGGATCTTGTGGTGGAATATATTCTTCATTTGAAGATTATTATAATGAACAACATAACTCATATCTTTTCACTAATCAACGACAATTATTACCATCTGGTTGGTCAACTGGTTGGTTAGAAGATGATGCAGTTAAACCGACACGAAGTATAACAGTAATGCAGTGGATTCCTGGTGGACGTCTTATTGATGTTTTGTGCAGTCGAGTAAAATATACTGAATTTTCTGTTATGATGTGGAGTCAACAGATTCTTTCAGCGTTAAAATGGGTCTACACA                                                                                                                                                                                   ]




>consensus_6547#1
AACATATACAAAACTTATTCTTGGAAAAACTCATCCAATGTTAAATGAAGGAGCGAATTT
CAATAATGTTCGACATCAAAACATATCTCTTCCACCTAGATTACTAAGTAAAATCACATA
TCTTAATTTAGAAGACAATAATCTACTGAAAAAAGCTCGTCGTGAAGCACTAATGCTTAC
TATTCTTCATGGATCTTGTGGTGGAATATATTCTTCATTTGAAGATTATTATAATGAACA
ACATAACTCATATCTTTTCACTAATCAACGACAATTATTACCATCTGGTTGGTCAACTGG
TTGGTTAGAAGATGATGCAGTTAAACCGACACGAAGTATAACAGTAATGCAGTGGATTCC
TGGTGGACGTCTTATTGATGTTTTGTGCAGTCGAGTAGAATATACTGAATTTTCTGTTAT
GATGTGGAGTCAACAGATTCTTTCAGCGTTAAAATGGTTCTACACATGCTTTTTAGGACG
ATCACATGGAAATATTTGTCCGGAGCATATACTTGTTGCACGACGAGCATCTTCGCTCCC
AGATATTGTATTGACTGGGTTCGGTCATGAATCTGATTCAGATGAAACCAACAACTACTT
TTCAGCTCCCGAGTTACGCAAGAATCAGCCAAAATCAATGGCGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6547#0      TTATGGCTTTGTTTAAGTGATCTTCATCCGGAACAAGATCGCAGTGTTGT-TGAATGCGT 59
consensus_6547#1      -----AACATATACAAAACTTATTCTTGGAAAAACTCATC-CAATGTTAAATGAAGGAGC 54
                               * *  **    * *** *    **    *** ** ****   **** * * 

consensus_6547#0      GATAAGAAATCGTGCTGGAAAATCAAGAACAAAAGCACGGCTT---TTATTTAGTGATAT 116
consensus_6547#1      GAATTTCAATAATGTTCGACATCAAAACATATCTCTTCCACCTAGATTACTAAGTAAAAT 114
                      **     ***  ** * ** *   **  * *      *  * *   *** * *** * **

consensus_6547#0      GCCGAAACCC--CCTGGTCGACCAGGTCTTATCGATATTCGTCCTACA-GAAGCATTGAT 173
consensus_6547#1      CACATATCTTAATTTAGAAGACAATAATCTACTGAAAAAAGCTCGTCGTGAAGCACTAAT 174
                        *  * *      * *  *** *     **  ** *   *  *  *  ****** * **

consensus_6547#0      TAGTTGGCTCTCTTCAACGTCGGATTCGAATGAAGATCTGATTTATCGCCTTGATATCAA 233
consensus_6547#1      -GCTTACTATTCTTCA----TGGATCTTGTGGTGGAATATATTCTTCAT-TTGA------ 222
                         **     ******     ****      *  **    ***  **   ****      

consensus_6547#0      ATATTCAGACCGTGATAATGAACCACCTTCATGGCATCGGCTTGG-ATTCACAGTAGATT 292
consensus_6547#1      ------AGATTATTATAATGAACAACATAACTCATATCTTTTCACTAATCAACGACAATT 276
                            ***   * ********* ** *   *   ***   *    * ***  *   ***

consensus_6547#0      GTCGTTATCTTATTAATAATCTTAAACCTGGTGTATATTATCGTGTCCGTGTATCCGCTA 352
consensus_6547#1      ATTACCATCTGGTTGGTCAACT---GGTTGGT-TAGAAGATGATGCAGTTAAACCGACAC 332
                       *    ****  **  * * **      **** ** *  **  **    *  * *  *  

consensus_6547#0      GAAATGCATTCGGTTGGGGCAATTACAGCATTGCATCTTCTGGTTTCCGTACACCTATCG 412
consensus_6547#1      GAAGTATA----------ACAGTAAT-GCAGTGGAT-TCCTGGTGGACGTCTTATTGATG 380
                      *** *  *           ** * *  *** ** ** * *****   ***     *   *

consensus_6547#0      TTTCTATGGATCAGTCATCAACTATTCTATCACCCAATGAACGAAAATGGATCTTCAACT 472
consensus_6547#1      TTTTGTGCAGTCGAGTAGAATATACTGAATTTTCTGTT--ATGATGTGGAGTCAACAGAT 438
                      ***       **    *  *  ** *  **   *   *  * **    *  **  **  *

consensus_6547#0      GGCGTCAATCAGAAAATATCTACGCATTAAGCGATCATCCAATAGCTTTACAATATGCAA 532
consensus_6547#1      TCTTTCAGCGTTAAAATGGTTCTACAC---ATGCTTTT----TAGGACGATCACATGGAA 491
                          ***     *****   *   **      * *  *    ***    *  * *** **

consensus_6547#0      TCGATCAGTCAATCAATGTACCTCCACCGTCAGACAAAATTTTACAGAAACTTAATCGAT 592
consensus_6547#1      ATATTTGTCCGGAGCATATACTTGTTGCACGACGAGCATCTTCGCTCCCAGATATTGTAT 551
                          *    *     ** *** *    *   *     *  **  *    *  ** *  **

consensus_6547#0      ATAATGGGATAATTC-CAAGTTTAGATGTATTAAAATCCATATGTAGACCAATTCGTCTG 651
consensus_6547#1      TGACTGGGTTCGGTCATGAATCTGATTCAGATGAAACCAACAACTACTTTTCAGCTCCCG 611
                        * **** *   **   * * *   *    * *** * * *  **        *  * *

consensus_6547#0      ATCAATAAGGGAACATATACAAAACTTATTCTTGGAAAAACTCATCCAA 700
consensus_6547#1      AGTTACGCAAGAAT-CAGCCAAAATCAATGGCGTC-------------- 645
                      *   *     ***   *  *****   **