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These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 6552 cluster # 6552       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6552#0 length = 677 sequences # 3  
consensus_6552#1 length = 276 sequences # 1  

consensusID : consensus_6552#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 677
fasta sequence
                              [CTCCTGTTGGAAAGCGACTACAAACGTTTCAGTTGCAATAACATTTGCAAAAGGTCTGATTTGGTTAACTATGAGATTGTCATTATTGAGAATGACACATATAGATATTCTCTTCATTATAAGTATTCAATGAGGATTCAACATAATCAACCTCAACCAGTGTCGAGTGACCGTTTTAATAATAAGGTAGATTACAGATACAAGGCTTATCCTAAATTCTCGTTTAGTTTTTACGGTTATCACGTTAAAGAAATTGATTTTTACGAAGATTGTAAGTCATAAATTTTCTTTGAAGTTAAATTCTTAATAAGTTTTGTTGATCCCGTTTCTTTTAATGAATCAAAATTGATTCCATTTTCTTCAGTGAATCAGTTATGTGCTCCTTGTCTAATGCAAAACTTCTTTCAATATTTTTTTCATTGTTCAACATGGTAATGGTTTGACTACTTATAGCATATCAAATACAGTTCCGTTTTATTATTTAAAATTGTTTATTCATTCATTACAAATTTATCAATGATGTGGCATGTTTTCATCCAATAAATACAGTTGAAAATGTATATGAACGGTCCCTTATTGGAAGTATCATTAATTACATACAAAACTATGAGAAATTTGAATCTAGAGTTTTGAATGGGGAGGAATTATTAGGAGTTCATAGGAATATTTCGATAAAC]

[+] EMBL CD160478             [CTCCTGTTGGAAAGCGACTACAAACGTTTCAGTTGCAATAACATTTGCAAAAGGTCTGATTTGGTTAACTATGAGATTGTCATTATTGAGAATGACACATATAGATATTCTCTTCATTATAAGTATTCAATGAGGATTCAACATAATCAACCTCAACCAGTGTCGAGTGACCGTTTTAATAATAAGGTAGATTACAGATACAAGGCTTATCCTAAATTCTCGTTTAGTTTTTACGGTTATCACGTTAAAGAAATTGATTTTTACGAAGATTGTAAGTCATAAATTTTCTTTGAAGTTAAATTCTTAATAAGTTTTGTTGATCCCGTTTCTTTTAATGAATCAAAATTGATTCCATTTTCTTCAGTGAATCAGTTATGTGCTCCTTGTCTAATGCAAAACTTCTTTCAATATTTTTTTCATTGTTCAACATGGTAATGGTTTGACTACTTATAGCATATCAAATACAGTTCCGTTTTATTATCTAAAATTGTTTATTCATTCATTACAAATNTATCAATGATGTGGCATGTTTTCATCCAATAAATACAGTTGAAAATG                                                                                                                       ]
[-] EMBL CD119947             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CATATCAAATACAGTTCCGTTTTATTATTTAAAATTGTTTATTCATTCATTACAAATTTATCAATGATGTGGCATGTTTTCATCCAATAAATACAGTTGAAAATGTATATGAACGGTCCCTTATTGGAAGTATCATTAATTACATACAAAACTATGAGAAATTTGAATCTAGAGTTTTGAATGGGGAGGAATTATTAGGAGTTCATAGGAATATTTCGATAAAC]
[-] EMBL CD119846             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CATATCAAATACAGTTCCGTTTTATTATTTAAAATTGTTTATTCATTCATTACAAATTTATCAATGATGTGGCATGTTTTCATCCAATAAATACAGTTGAAAATGTATATGAACGGTCCCTTATTGGAAGTATCATTAATTACATACAAAACTATGAGAAATTTGAATCTAGAGTTTTGAATGGGGAGGAATTATTAGGAGTTCATAGGAATATTTCGATAAAC]


>consensus_6552#0 CTCCTGTTGGAAAGCGACTACAAACGTTTCAGTTGCAATAACATTTGCAAAAGGTCTGAT TTGGTTAACTATGAGATTGTCATTATTGAGAATGACACATATAGATATTCTCTTCATTAT AAGTATTCAATGAGGATTCAACATAATCAACCTCAACCAGTGTCGAGTGACCGTTTTAAT AATAAGGTAGATTACAGATACAAGGCTTATCCTAAATTCTCGTTTAGTTTTTACGGTTAT CACGTTAAAGAAATTGATTTTTACGAAGATTGTAAGTCATAAATTTTCTTTGAAGTTAAA TTCTTAATAAGTTTTGTTGATCCCGTTTCTTTTAATGAATCAAAATTGATTCCATTTTCT TCAGTGAATCAGTTATGTGCTCCTTGTCTAATGCAAAACTTCTTTCAATATTTTTTTCAT TGTTCAACATGGTAATGGTTTGACTACTTATAGCATATCAAATACAGTTCCGTTTTATTA TTTAAAATTGTTTATTCATTCATTACAAATTTATCAATGATGTGGCATGTTTTCATCCAA TAAATACAGTTGAAAATGTATATGAACGGTCCCTTATTGGAAGTATCATTAATTACATAC AAAACTATGAGAAATTTGAATCTAGAGTTTTGAATGGGGAGGAATTATTAGGAGTTCATA GGAATATTTCGATAAAC



consensusID : consensus_6552#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 276
fasta sequence
                              [TAATGCAAAACTTCTTTCAATATTTTTTTCATTGTTCAACATGGGAATGGTTTGACTACTTATAGCATATCAAATACAGTTCCGTTTTATTATTTAAAATTGTTTATTCATTCATTACAAATTTATCAATGATGTGGCATGTTTTCATCCAATAAATACAGCTGAAAATGTATATGAACGGTCCCTTATTGGAAGTATCATTAATTACCTACAAAACTATGAGAAATTTGAATCCACAGTTTTGAATGAAGGTGAGTTCTTATATTATTCAGCTAT]

[+] EMBL CD113364             [TAATGCAAAACTTCTTTCAATATTTTTTTCATTGTTCAACATGGGAATGGTTTGACTACTTATAGCATATCAAATACAGTTCCGTTTTATTATTTAAAATTGTTTATTCATTCATTACAAATTTATCAATGATGTGGCATGTTTTCATCCAATAAATACAGCTGAAAATGTATATGAACGGTCCCTTATTGGAAGTATCATTAATTACCTACAAAACTATGAGAAATTTGAATCCACAGTTTTGAATGAAGGTGAGTTCTTATATTATTCAGCTAT]


>consensus_6552#1 TAATGCAAAACTTCTTTCAATATTTTTTTCATTGTTCAACATGGGAATGGTTTGACTACT TATAGCATATCAAATACAGTTCCGTTTTATTATTTAAAATTGTTTATTCATTCATTACAA ATTTATCAATGATGTGGCATGTTTTCATCCAATAAATACAGCTGAAAATGTATATGAACG GTCCCTTATTGGAAGTATCATTAATTACCTACAAAACTATGAGAAATTTGAATCCACAGT TTTGAATGAAGGTGAGTTCTTATATTATTCAGCTAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6552#0      CTCCTGTTGGAAAGCGACTACAAACGTTTCAGTTGCAATAACATTTGCAAAAGGTCTGAT 60
consensus_6552#1      ------------------------------------------------------------
                                                                                  

consensus_6552#0      TTGGTTAACTATGAGATTGTCATTATTGAGAATGACACATATAGATATTCTCTTCATTAT 120
consensus_6552#1      ------------------------------------------------------------
                                                                                  

consensus_6552#0      AAGTATTCAATGAGGATTCAACATAATCAACCTCAACCAGTGTCGAGTGACCGTTTTAAT 180
consensus_6552#1      ------------------------------------------------------------
                                                                                  

consensus_6552#0      AATAAGGTAGATTACAGATACAAGGCTTATCCTAAATTCTCGTTTAGTTTTTACGGTTAT 240
consensus_6552#1      ------------------------------------------------------------
                                                                                  

consensus_6552#0      CACGTTAAAGAAATTGATTTTTACGAAGATTGTAAGTCATAAATTTTCTTTGAAGTTAAA 300
consensus_6552#1      ------------------------------------------------------------
                                                                                  

consensus_6552#0      TTCTTAATAAGTTTTGTTGATCCCGTTTCTTTTAATGAATCAAAATTGATTCCATTTTCT 360
consensus_6552#1      ------------------------------------------------------------
                                                                                  

consensus_6552#0      TCAGTGAATCAGTTATGTGCTCCTTGTCTAATGCAAAACTTCTTTCAATATTTTTTTCAT 420
consensus_6552#1      ----------------------------TAATGCAAAACTTCTTTCAATATTTTTTTCAT 32
                                                  ********************************

consensus_6552#0      TGTTCAACATGGTAATGGTTTGACTACTTATAGCATATCAAATACAGTTCCGTTTTATTA 480
consensus_6552#1      TGTTCAACATGGGAATGGTTTGACTACTTATAGCATATCAAATACAGTTCCGTTTTATTA 92
                      ************ ***********************************************

consensus_6552#0      TTTAAAATTGTTTATTCATTCATTACAAATTTATCAATGATGTGGCATGTTTTCATCCAA 540
consensus_6552#1      TTTAAAATTGTTTATTCATTCATTACAAATTTATCAATGATGTGGCATGTTTTCATCCAA 152
                      ************************************************************

consensus_6552#0      TAAATACAGTTGAAAATGTATATGAACGGTCCCTTATTGGAAGTATCATTAATTACATAC 600
consensus_6552#1      TAAATACAGCTGAAAATGTATATGAACGGTCCCTTATTGGAAGTATCATTAATTACCTAC 212
                      ********* ********************************************** ***

consensus_6552#0      AAAACTATGAGAAATTTGAATCTAGAGTTTTGAATGGGGAGGAATTATTAGGAGTTCATA 660
consensus_6552#1      AAAACTATGAGAAATTTGAATCCACAGTTTTGAATGAAGGTGAGTTCTTATA---TTATT 269
                      ********************** * ***********  *  ** ** ***     * ** 

consensus_6552#0      GGAATATTTCGATAAAC 677
consensus_6552#1      CAGCTAT---------- 276
                          ***          




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)