These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6552#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 677 fasta sequence [CTCCTGTTGGAAAGCGACTACAAACGTTTCAGTTGCAATAACATTTGCAAAAGGTCTGATTTGGTTAACTATGAGATTGTCATTATTGAGAATGACACATATAGATATTCTCTTCATTATAAGTATTCAATGAGGATTCAACATAATCAACCTCAACCAGTGTCGAGTGACCGTTTTAATAATAAGGTAGATTACAGATACAAGGCTTATCCTAAATTCTCGTTTAGTTTTTACGGTTATCACGTTAAAGAAATTGATTTTTACGAAGATTGTAAGTCATAAATTTTCTTTGAAGTTAAATTCTTAATAAGTTTTGTTGATCCCGTTTCTTTTAATGAATCAAAATTGATTCCATTTTCTTCAGTGAATCAGTTATGTGCTCCTTGTCTAATGCAAAACTTCTTTCAATATTTTTTTCATTGTTCAACATGGTAATGGTTTGACTACTTATAGCATATCAAATACAGTTCCGTTTTATTATTTAAAATTGTTTATTCATTCATTACAAATTTATCAATGATGTGGCATGTTTTCATCCAATAAATACAGTTGAAAATGTATATGAACGGTCCCTTATTGGAAGTATCATTAATTACATACAAAACTATGAGAAATTTGAATCTAGAGTTTTGAATGGGGAGGAATTATTAGGAGTTCATAGGAATATTTCGATAAAC] [+] EMBL CD160478 [CTCCTGTTGGAAAGCGACTACAAACGTTTCAGTTGCAATAACATTTGCAAAAGGTCTGATTTGGTTAACTATGAGATTGTCATTATTGAGAATGACACATATAGATATTCTCTTCATTATAAGTATTCAATGAGGATTCAACATAATCAACCTCAACCAGTGTCGAGTGACCGTTTTAATAATAAGGTAGATTACAGATACAAGGCTTATCCTAAATTCTCGTTTAGTTTTTACGGTTATCACGTTAAAGAAATTGATTTTTACGAAGATTGTAAGTCATAAATTTTCTTTGAAGTTAAATTCTTAATAAGTTTTGTTGATCCCGTTTCTTTTAATGAATCAAAATTGATTCCATTTTCTTCAGTGAATCAGTTATGTGCTCCTTGTCTAATGCAAAACTTCTTTCAATATTTTTTTCATTGTTCAACATGGTAATGGTTTGACTACTTATAGCATATCAAATACAGTTCCGTTTTATTATCTAAAATTGTTTATTCATTCATTACAAATNTATCAATGATGTGGCATGTTTTCATCCAATAAATACAGTTGAAAATG ] [-] EMBL CD119947 [ CATATCAAATACAGTTCCGTTTTATTATTTAAAATTGTTTATTCATTCATTACAAATTTATCAATGATGTGGCATGTTTTCATCCAATAAATACAGTTGAAAATGTATATGAACGGTCCCTTATTGGAAGTATCATTAATTACATACAAAACTATGAGAAATTTGAATCTAGAGTTTTGAATGGGGAGGAATTATTAGGAGTTCATAGGAATATTTCGATAAAC] [-] EMBL CD119846 [ CATATCAAATACAGTTCCGTTTTATTATTTAAAATTGTTTATTCATTCATTACAAATTTATCAATGATGTGGCATGTTTTCATCCAATAAATACAGTTGAAAATGTATATGAACGGTCCCTTATTGGAAGTATCATTAATTACATACAAAACTATGAGAAATTTGAATCTAGAGTTTTGAATGGGGAGGAATTATTAGGAGTTCATAGGAATATTTCGATAAAC] consensusID : consensus_6552#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 276 fasta sequence [TAATGCAAAACTTCTTTCAATATTTTTTTCATTGTTCAACATGGGAATGGTTTGACTACTTATAGCATATCAAATACAGTTCCGTTTTATTATTTAAAATTGTTTATTCATTCATTACAAATTTATCAATGATGTGGCATGTTTTCATCCAATAAATACAGCTGAAAATGTATATGAACGGTCCCTTATTGGAAGTATCATTAATTACCTACAAAACTATGAGAAATTTGAATCCACAGTTTTGAATGAAGGTGAGTTCTTATATTATTCAGCTAT] [+] EMBL CD113364 [TAATGCAAAACTTCTTTCAATATTTTTTTCATTGTTCAACATGGGAATGGTTTGACTACTTATAGCATATCAAATACAGTTCCGTTTTATTATTTAAAATTGTTTATTCATTCATTACAAATTTATCAATGATGTGGCATGTTTTCATCCAATAAATACAGCTGAAAATGTATATGAACGGTCCCTTATTGGAAGTATCATTAATTACCTACAAAACTATGAGAAATTTGAATCCACAGTTTTGAATGAAGGTGAGTTCTTATATTATTCAGCTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6552#0 CTCCTGTTGGAAAGCGACTACAAACGTTTCAGTTGCAATAACATTTGCAAAAGGTCTGAT 60 consensus_6552#1 ------------------------------------------------------------ consensus_6552#0 TTGGTTAACTATGAGATTGTCATTATTGAGAATGACACATATAGATATTCTCTTCATTAT 120 consensus_6552#1 ------------------------------------------------------------ consensus_6552#0 AAGTATTCAATGAGGATTCAACATAATCAACCTCAACCAGTGTCGAGTGACCGTTTTAAT 180 consensus_6552#1 ------------------------------------------------------------ consensus_6552#0 AATAAGGTAGATTACAGATACAAGGCTTATCCTAAATTCTCGTTTAGTTTTTACGGTTAT 240 consensus_6552#1 ------------------------------------------------------------ consensus_6552#0 CACGTTAAAGAAATTGATTTTTACGAAGATTGTAAGTCATAAATTTTCTTTGAAGTTAAA 300 consensus_6552#1 ------------------------------------------------------------ consensus_6552#0 TTCTTAATAAGTTTTGTTGATCCCGTTTCTTTTAATGAATCAAAATTGATTCCATTTTCT 360 consensus_6552#1 ------------------------------------------------------------ consensus_6552#0 TCAGTGAATCAGTTATGTGCTCCTTGTCTAATGCAAAACTTCTTTCAATATTTTTTTCAT 420 consensus_6552#1 ----------------------------TAATGCAAAACTTCTTTCAATATTTTTTTCAT 32 ******************************** consensus_6552#0 TGTTCAACATGGTAATGGTTTGACTACTTATAGCATATCAAATACAGTTCCGTTTTATTA 480 consensus_6552#1 TGTTCAACATGGGAATGGTTTGACTACTTATAGCATATCAAATACAGTTCCGTTTTATTA 92 ************ *********************************************** consensus_6552#0 TTTAAAATTGTTTATTCATTCATTACAAATTTATCAATGATGTGGCATGTTTTCATCCAA 540 consensus_6552#1 TTTAAAATTGTTTATTCATTCATTACAAATTTATCAATGATGTGGCATGTTTTCATCCAA 152 ************************************************************ consensus_6552#0 TAAATACAGTTGAAAATGTATATGAACGGTCCCTTATTGGAAGTATCATTAATTACATAC 600 consensus_6552#1 TAAATACAGCTGAAAATGTATATGAACGGTCCCTTATTGGAAGTATCATTAATTACCTAC 212 ********* ********************************************** *** consensus_6552#0 AAAACTATGAGAAATTTGAATCTAGAGTTTTGAATGGGGAGGAATTATTAGGAGTTCATA 660 consensus_6552#1 AAAACTATGAGAAATTTGAATCCACAGTTTTGAATGAAGGTGAGTTCTTATA---TTATT 269 ********************** * *********** * ** ** *** * ** consensus_6552#0 GGAATATTTCGATAAAC 677 consensus_6552#1 CAGCTAT---------- 276 *** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||