cluster # 6552

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Schistosoma mansoni
cluster # 6552 cluster # 6552 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6552#0 length = 677 sequences # 3

consensus_6552#1 length = 276 sequences # 1

consensusID : consensus_6552#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 677
fasta sequence

                              [CTCCTGTTGGAAAGCGACTACAAACGTTTCAGTTGCAATAACATTTGCAAAAGGTCTGATTTGGTTAACTATGAGATTGTCATTATTGAGAATGACACATATAGATATTCTCTTCATTATAAGTATTCAATGAGGATTCAACATAATCAACCTCAACCAGTGTCGAGTGACCGTTTTAATAATAAGGTAGATTACAGATACAAGGCTTATCCTAAATTCTCGTTTAGTTTTTACGGTTATCACGTTAAAGAAATTGATTTTTACGAAGATTGTAAGTCATAAATTTTCTTTGAAGTTAAATTCTTAATAAGTTTTGTTGATCCCGTTTCTTTTAATGAATCAAAATTGATTCCATTTTCTTCAGTGAATCAGTTATGTGCTCCTTGTCTAATGCAAAACTTCTTTCAATATTTTTTTCATTGTTCAACATGGTAATGGTTTGACTACTTATAGCATATCAAATACAGTTCCGTTTTATTATTTAAAATTGTTTATTCATTCATTACAAATTTATCAATGATGTGGCATGTTTTCATCCAATAAATACAGTTGAAAATGTATATGAACGGTCCCTTATTGGAAGTATCATTAATTACATACAAAACTATGAGAAATTTGAATCTAGAGTTTTGAATGGGGAGGAATTATTAGGAGTTCATAGGAATATTTCGATAAAC]

[+] EMBL CD160478             [CTCCTGTTGGAAAGCGACTACAAACGTTTCAGTTGCAATAACATTTGCAAAAGGTCTGATTTGGTTAACTATGAGATTGTCATTATTGAGAATGACACATATAGATATTCTCTTCATTATAAGTATTCAATGAGGATTCAACATAATCAACCTCAACCAGTGTCGAGTGACCGTTTTAATAATAAGGTAGATTACAGATACAAGGCTTATCCTAAATTCTCGTTTAGTTTTTACGGTTATCACGTTAAAGAAATTGATTTTTACGAAGATTGTAAGTCATAAATTTTCTTTGAAGTTAAATTCTTAATAAGTTTTGTTGATCCCGTTTCTTTTAATGAATCAAAATTGATTCCATTTTCTTCAGTGAATCAGTTATGTGCTCCTTGTCTAATGCAAAACTTCTTTCAATATTTTTTTCATTGTTCAACATGGTAATGGTTTGACTACTTATAGCATATCAAATACAGTTCCGTTTTATTATCTAAAATTGTTTATTCATTCATTACAAATNTATCAATGATGTGGCATGTTTTCATCCAATAAATACAGTTGAAAATG                                                                                                                       ]
[-] EMBL CD119947             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CATATCAAATACAGTTCCGTTTTATTATTTAAAATTGTTTATTCATTCATTACAAATTTATCAATGATGTGGCATGTTTTCATCCAATAAATACAGTTGAAAATGTATATGAACGGTCCCTTATTGGAAGTATCATTAATTACATACAAAACTATGAGAAATTTGAATCTAGAGTTTTGAATGGGGAGGAATTATTAGGAGTTCATAGGAATATTTCGATAAAC]
[-] EMBL CD119846             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CATATCAAATACAGTTCCGTTTTATTATTTAAAATTGTTTATTCATTCATTACAAATTTATCAATGATGTGGCATGTTTTCATCCAATAAATACAGTTGAAAATGTATATGAACGGTCCCTTATTGGAAGTATCATTAATTACATACAAAACTATGAGAAATTTGAATCTAGAGTTTTGAATGGGGAGGAATTATTAGGAGTTCATAGGAATATTTCGATAAAC]




>consensus_6552#0
CTCCTGTTGGAAAGCGACTACAAACGTTTCAGTTGCAATAACATTTGCAAAAGGTCTGAT
TTGGTTAACTATGAGATTGTCATTATTGAGAATGACACATATAGATATTCTCTTCATTAT
AAGTATTCAATGAGGATTCAACATAATCAACCTCAACCAGTGTCGAGTGACCGTTTTAAT
AATAAGGTAGATTACAGATACAAGGCTTATCCTAAATTCTCGTTTAGTTTTTACGGTTAT
CACGTTAAAGAAATTGATTTTTACGAAGATTGTAAGTCATAAATTTTCTTTGAAGTTAAA
TTCTTAATAAGTTTTGTTGATCCCGTTTCTTTTAATGAATCAAAATTGATTCCATTTTCT
TCAGTGAATCAGTTATGTGCTCCTTGTCTAATGCAAAACTTCTTTCAATATTTTTTTCAT
TGTTCAACATGGTAATGGTTTGACTACTTATAGCATATCAAATACAGTTCCGTTTTATTA
TTTAAAATTGTTTATTCATTCATTACAAATTTATCAATGATGTGGCATGTTTTCATCCAA
TAAATACAGTTGAAAATGTATATGAACGGTCCCTTATTGGAAGTATCATTAATTACATAC
AAAACTATGAGAAATTTGAATCTAGAGTTTTGAATGGGGAGGAATTATTAGGAGTTCATA
GGAATATTTCGATAAAC

consensusID : consensus_6552#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 276
fasta sequence

                              [TAATGCAAAACTTCTTTCAATATTTTTTTCATTGTTCAACATGGGAATGGTTTGACTACTTATAGCATATCAAATACAGTTCCGTTTTATTATTTAAAATTGTTTATTCATTCATTACAAATTTATCAATGATGTGGCATGTTTTCATCCAATAAATACAGCTGAAAATGTATATGAACGGTCCCTTATTGGAAGTATCATTAATTACCTACAAAACTATGAGAAATTTGAATCCACAGTTTTGAATGAAGGTGAGTTCTTATATTATTCAGCTAT]

[+] EMBL CD113364             [TAATGCAAAACTTCTTTCAATATTTTTTTCATTGTTCAACATGGGAATGGTTTGACTACTTATAGCATATCAAATACAGTTCCGTTTTATTATTTAAAATTGTTTATTCATTCATTACAAATTTATCAATGATGTGGCATGTTTTCATCCAATAAATACAGCTGAAAATGTATATGAACGGTCCCTTATTGGAAGTATCATTAATTACCTACAAAACTATGAGAAATTTGAATCCACAGTTTTGAATGAAGGTGAGTTCTTATATTATTCAGCTAT]




>consensus_6552#1
TAATGCAAAACTTCTTTCAATATTTTTTTCATTGTTCAACATGGGAATGGTTTGACTACT
TATAGCATATCAAATACAGTTCCGTTTTATTATTTAAAATTGTTTATTCATTCATTACAA
ATTTATCAATGATGTGGCATGTTTTCATCCAATAAATACAGCTGAAAATGTATATGAACG
GTCCCTTATTGGAAGTATCATTAATTACCTACAAAACTATGAGAAATTTGAATCCACAGT
TTTGAATGAAGGTGAGTTCTTATATTATTCAGCTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6552#0      CTCCTGTTGGAAAGCGACTACAAACGTTTCAGTTGCAATAACATTTGCAAAAGGTCTGAT 60
consensus_6552#1      ------------------------------------------------------------
                                                                                  

consensus_6552#0      TTGGTTAACTATGAGATTGTCATTATTGAGAATGACACATATAGATATTCTCTTCATTAT 120
consensus_6552#1      ------------------------------------------------------------
                                                                                  

consensus_6552#0      AAGTATTCAATGAGGATTCAACATAATCAACCTCAACCAGTGTCGAGTGACCGTTTTAAT 180
consensus_6552#1      ------------------------------------------------------------
                                                                                  

consensus_6552#0      AATAAGGTAGATTACAGATACAAGGCTTATCCTAAATTCTCGTTTAGTTTTTACGGTTAT 240
consensus_6552#1      ------------------------------------------------------------
                                                                                  

consensus_6552#0      CACGTTAAAGAAATTGATTTTTACGAAGATTGTAAGTCATAAATTTTCTTTGAAGTTAAA 300
consensus_6552#1      ------------------------------------------------------------
                                                                                  

consensus_6552#0      TTCTTAATAAGTTTTGTTGATCCCGTTTCTTTTAATGAATCAAAATTGATTCCATTTTCT 360
consensus_6552#1      ------------------------------------------------------------
                                                                                  

consensus_6552#0      TCAGTGAATCAGTTATGTGCTCCTTGTCTAATGCAAAACTTCTTTCAATATTTTTTTCAT 420
consensus_6552#1      ----------------------------TAATGCAAAACTTCTTTCAATATTTTTTTCAT 32
                                                  ********************************

consensus_6552#0      TGTTCAACATGGTAATGGTTTGACTACTTATAGCATATCAAATACAGTTCCGTTTTATTA 480
consensus_6552#1      TGTTCAACATGGGAATGGTTTGACTACTTATAGCATATCAAATACAGTTCCGTTTTATTA 92
                      ************ ***********************************************

consensus_6552#0      TTTAAAATTGTTTATTCATTCATTACAAATTTATCAATGATGTGGCATGTTTTCATCCAA 540
consensus_6552#1      TTTAAAATTGTTTATTCATTCATTACAAATTTATCAATGATGTGGCATGTTTTCATCCAA 152
                      ************************************************************

consensus_6552#0      TAAATACAGTTGAAAATGTATATGAACGGTCCCTTATTGGAAGTATCATTAATTACATAC 600
consensus_6552#1      TAAATACAGCTGAAAATGTATATGAACGGTCCCTTATTGGAAGTATCATTAATTACCTAC 212
                      ********* ********************************************** ***

consensus_6552#0      AAAACTATGAGAAATTTGAATCTAGAGTTTTGAATGGGGAGGAATTATTAGGAGTTCATA 660
consensus_6552#1      AAAACTATGAGAAATTTGAATCCACAGTTTTGAATGAAGGTGAGTTCTTATA---TTATT 269
                      ********************** * ***********  *  ** ** ***     * ** 

consensus_6552#0      GGAATATTTCGATAAAC 677
consensus_6552#1      CAGCTAT---------- 276
                          ***