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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6553#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 699 fasta sequence
[TGACCACACCACTAGATACCTCGGCTTCTAAAGGCCTTCCTTCCTTTAATAAGGGTATTCAACGACGTACTGATCCATCAAGTGTACAAAGTCTTTCCGGCACAAGCAGTACTAGTTCTGCGAGTCGCCAAAATGGAACTGGAGCAAGTGCTGCTGGGAGTGGTAGCGGCAGTGCCGTAACTACACATGTACTCAAAAAATTTAACACGAATAACAATAGTAATAATAATAACAGTTTGACTAATAGATCCGAATGTCTTGACAATGTTCAACGTACACAGCATGGTATGGATTTTACCAATGCATTTCGTCAAACTAATTGCAATTTAGTCAAAGAGTCAAACAATAAACCGGAAATCAATCAATCATTTAATCATACAATGACAACTGGTGGAATTCCCAATAATCAGAGATGATGTAGTCTGTGTGTTCATTCATTCATATACATAAACTGACAGATAACTCTTTCTATAAATTGCTAATTAATGGCATAATCATTTGTGGATCTGTTTAATTTTCTTCTGCCTGAGAAT-CCGACAAAGAATAAAATGTTACAGTGGAAAAGACATTCATCCTAATATTTTCAAACGATCTACTTTTTTCAGTAAAGTATATATAAATTATGTAACAAGATGACAATACATATGTATATAAATATACATATGTCCGTATGTATTATTCTTCACACCTTCACCCGGT]
[-] EMBL BG931935 [TGACCACACCACTAGATACCTCGGCTTCTAAAGGCCTTCCTTCCTTTAATAAGGGTATTCAACGACGTACTGATCCATCAAGTGTACAAAGTCTTTCCGGCACAAGCAGTACTAGTTCTGCGAGTCGCCAAAATGGAACTGGAGCAAGTGCTGCTGGGAGTGGTAGCGGCAGTGCCGTAACTACACATGTACTCAAAAAATTTAACACGAATAACAATAGTAATAATAATAACAGTTTGACTAATAGATCCGAATGTCTTGACAATGTTCAACGTACACAGCATGGTATGGATTTTACCAATGCATTTCGTCAAACTAATTGCAATTTAGTCAAAGAGTCAAACAATAAACCGGAA ]
[+] EMBL CD067131 [ GCTGGGAGTGGTAGCGGCAGTGCCGTAACTACACATGTACTCAAAAAATTTAACACGAATAACAATAGTAATAATAATAACAGTTTGACTAATAGATCCGAATGTCTTGACAATGTTCAACGTACACAGCATGGTATGGATTTTACCAATGCATTTCGTCAAACTAATTGCAATTTAGTCAAAGAGTCAAACAATAAACCGGAAATCAATCAATCATTTAATCATACAATGACAACTGGTGGAATTCCCAATAATCAGAGATGATGTAGTCTGTGTGTTCATTCATTCATATACATAAACTGACAGATAACTCTTTCTATAAATTGCTAATTAATGGCATAATCATTTGTGGATCTGTTTAATTTTCTTCTGCCTGAGAAT CCGACAAAGAATAAAATGTTACAGTGGAAAAGACATTCATCCTAATATTTTCAAACGATCTACTTTTTTCAGTAAAGTATATATAAATTATGTAACAAGATGACAATACATATGTATATAAATATACATATGTCCGTATGTATTATTCTTCACACCTTCACCCGGT]
[+] EMBL CD077605 [ TCTTGACAATGTTCAACGTACACAGCATGGTATGGATTTTACCAATGCATTTCGTCAAACTAATTGCAATTTAGTCAAAGAGTCAAACAATAAACCGGAAATCAATCAATCATTTAATCATACAATGACAACTGGTGGAATTCCCAATAATCAGAGATGATGTAGTCTGTGTGTTCATTCATTCATATACATAAACTGACAGATAACTCTTTCTATAAATTGCTAATTAATGGCATAATCATTTGTGGATCTGTTTAATTTTCTTCTGCCTGA AATCCCGAC AAG ATAAAA ]
consensusID : consensus_6553#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 469 fasta sequence
[GCTGGGAGTGGTAGCGGCAGTGCCGTAACTACACATGTACTCAAAAAATTTAACACGAATAACAATAGTAATAATAATAACAGTTTGACTAATAGATCCGAATGTCTTGACAATGTTCAACGTACACAGCATGGTATGGATTTTACCAGTGCATTTCGTCAAACTAATTGCAATTTAGTCAAAGAGTCAAACAATAAACCGGAAATCAATCAATCATTTAATCATACAATGACAACTGGTGGAATTCCCAATAATCAGAGATGATGTAGTCTGTGTGTTCATTCATTCATATACATAAACTGACAGATAACTCTTTCTATAAATTGGTAATTATTTTGTTCTATTTATTTATTATTTGATACTTATTTACTACGTCTATTTATGCACCACCTAGAATACATTAGTTTCATGTGGATTTCAAATAATATTATTTGTGTTAATTTACCATTTTTATGCATAAAATTTCCCG]
[+] EMBL CD066763 [GCTGGGAGTGGTAGCGGCAGTGCCGTAACTACACATGTACTCAAAAAATTTAACACGAATAACAATAGTAATAATAATAACAGTTTGACTAATAGATCCGAATGTCTTGACAATGTTCAACGTACACAGCATGGTATGGATTTTACCAGTGCATTTCGTCAAACTAATTGCAATTTAGTCAAAGAGTCAAACAATAAACCGGAAATCAATCAATCATTTAATCATACAATGACAACTGGTGGAATTCCCAATAATCAGAGATGATGTAGTCTGTGTGTTCATTCATTCATATACATAAACTGACAGATAACTCTTTCTATAAATTGGTAATTATTTTGTTCTATTTATTTATTATTTGATACTTATTTACTACGTCTATTTATGCACCACCTAGAATACATTAGTTTCATGTGGATTTCAAATAATATTATTTGTGTTAATTTACCATTTTTATGCATAAAATTTCCCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6553#0 TGACCACACCACTAGATACCTCGGCTTCTAAAGGCCTTCCTTCCTTTAATAAGGGTATTC 60
consensus_6553#1 ------------------------------------------------------------
consensus_6553#0 AACGACGTACTGATCCATCAAGTGTACAAAGTCTTTCCGGCACAAGCAGTACTAGTTCTG 120
consensus_6553#1 ------------------------------------------------------------
consensus_6553#0 CGAGTCGCCAAAATGGAACTGGAGCAAGTGCTGCTGGGAGTGGTAGCGGCAGTGCCGTAA 180
consensus_6553#1 --------------------------------GCTGGGAGTGGTAGCGGCAGTGCCGTAA 28
****************************
consensus_6553#0 CTACACATGTACTCAAAAAATTTAACACGAATAACAATAGTAATAATAATAACAGTTTGA 240
consensus_6553#1 CTACACATGTACTCAAAAAATTTAACACGAATAACAATAGTAATAATAATAACAGTTTGA 88
************************************************************
consensus_6553#0 CTAATAGATCCGAATGTCTTGACAATGTTCAACGTACACAGCATGGTATGGATTTTACCA 300
consensus_6553#1 CTAATAGATCCGAATGTCTTGACAATGTTCAACGTACACAGCATGGTATGGATTTTACCA 148
************************************************************
consensus_6553#0 ATGCATTTCGTCAAACTAATTGCAATTTAGTCAAAGAGTCAAACAATAAACCGGAAATCA 360
consensus_6553#1 GTGCATTTCGTCAAACTAATTGCAATTTAGTCAAAGAGTCAAACAATAAACCGGAAATCA 208
***********************************************************
consensus_6553#0 ATCAATCATTTAATCATACAATGACAACTGGTGGAATTCCCAATAATCAGAGATGATGTA 420
consensus_6553#1 ATCAATCATTTAATCATACAATGACAACTGGTGGAATTCCCAATAATCAGAGATGATGTA 268
************************************************************
consensus_6553#0 GTCTGTGTGTTCATTCATTCATATACATAAACTGACAGATAACTCTTTCTATAAATTGCT 480
consensus_6553#1 GTCTGTGTGTTCATTCATTCATATACATAAACTGACAGATAACTCTTTCTATAAATTGGT 328
********************************************************** *
consensus_6553#0 AATTAAT--GGCATAATCATTTGTGGATCTGTTTAATTTTCTTCTGCCTGAGAATCCGAC 538
consensus_6553#1 AATTATTTTGTTCTATTTATTTATTATTTGATACTTATTTACTACGTCTATTTATGCACC 388
***** * * ** * **** * * * *** * * ** ** * *
consensus_6553#0 AA--AGAATAAAATGTTACAGTGGAAAAGACATTCATCCTAATATTTTCAAACGATCTAC 596
consensus_6553#1 ACCTAGAATACATTAGTTTCATGTGGATTTCAAATAATATTATTTGTGTTAATTTACCAT 448
* ****** * * * ** * ** * * ** * * ** * *
consensus_6553#0 TTTTTTCAGTAAAGTATATATAAATTATGTAACAAGATGACAATACATATGTATATAAAT 656
consensus_6553#1 TTTTATGCATAAAATTTCCCG--------------------------------------- 469
**** * **** * *
consensus_6553#0 ATACATATGTCCGTATGTATTATTCTTCACACCTTCACCCGGT 699
consensus_6553#1 -------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||