These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6553#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 699 fasta sequence [TGACCACACCACTAGATACCTCGGCTTCTAAAGGCCTTCCTTCCTTTAATAAGGGTATTCAACGACGTACTGATCCATCAAGTGTACAAAGTCTTTCCGGCACAAGCAGTACTAGTTCTGCGAGTCGCCAAAATGGAACTGGAGCAAGTGCTGCTGGGAGTGGTAGCGGCAGTGCCGTAACTACACATGTACTCAAAAAATTTAACACGAATAACAATAGTAATAATAATAACAGTTTGACTAATAGATCCGAATGTCTTGACAATGTTCAACGTACACAGCATGGTATGGATTTTACCAATGCATTTCGTCAAACTAATTGCAATTTAGTCAAAGAGTCAAACAATAAACCGGAAATCAATCAATCATTTAATCATACAATGACAACTGGTGGAATTCCCAATAATCAGAGATGATGTAGTCTGTGTGTTCATTCATTCATATACATAAACTGACAGATAACTCTTTCTATAAATTGCTAATTAATGGCATAATCATTTGTGGATCTGTTTAATTTTCTTCTGCCTGAGAAT-CCGACAAAGAATAAAATGTTACAGTGGAAAAGACATTCATCCTAATATTTTCAAACGATCTACTTTTTTCAGTAAAGTATATATAAATTATGTAACAAGATGACAATACATATGTATATAAATATACATATGTCCGTATGTATTATTCTTCACACCTTCACCCGGT] [-] EMBL BG931935 [TGACCACACCACTAGATACCTCGGCTTCTAAAGGCCTTCCTTCCTTTAATAAGGGTATTCAACGACGTACTGATCCATCAAGTGTACAAAGTCTTTCCGGCACAAGCAGTACTAGTTCTGCGAGTCGCCAAAATGGAACTGGAGCAAGTGCTGCTGGGAGTGGTAGCGGCAGTGCCGTAACTACACATGTACTCAAAAAATTTAACACGAATAACAATAGTAATAATAATAACAGTTTGACTAATAGATCCGAATGTCTTGACAATGTTCAACGTACACAGCATGGTATGGATTTTACCAATGCATTTCGTCAAACTAATTGCAATTTAGTCAAAGAGTCAAACAATAAACCGGAA ] [+] EMBL CD067131 [ GCTGGGAGTGGTAGCGGCAGTGCCGTAACTACACATGTACTCAAAAAATTTAACACGAATAACAATAGTAATAATAATAACAGTTTGACTAATAGATCCGAATGTCTTGACAATGTTCAACGTACACAGCATGGTATGGATTTTACCAATGCATTTCGTCAAACTAATTGCAATTTAGTCAAAGAGTCAAACAATAAACCGGAAATCAATCAATCATTTAATCATACAATGACAACTGGTGGAATTCCCAATAATCAGAGATGATGTAGTCTGTGTGTTCATTCATTCATATACATAAACTGACAGATAACTCTTTCTATAAATTGCTAATTAATGGCATAATCATTTGTGGATCTGTTTAATTTTCTTCTGCCTGAGAAT CCGACAAAGAATAAAATGTTACAGTGGAAAAGACATTCATCCTAATATTTTCAAACGATCTACTTTTTTCAGTAAAGTATATATAAATTATGTAACAAGATGACAATACATATGTATATAAATATACATATGTCCGTATGTATTATTCTTCACACCTTCACCCGGT] [+] EMBL CD077605 [ TCTTGACAATGTTCAACGTACACAGCATGGTATGGATTTTACCAATGCATTTCGTCAAACTAATTGCAATTTAGTCAAAGAGTCAAACAATAAACCGGAAATCAATCAATCATTTAATCATACAATGACAACTGGTGGAATTCCCAATAATCAGAGATGATGTAGTCTGTGTGTTCATTCATTCATATACATAAACTGACAGATAACTCTTTCTATAAATTGCTAATTAATGGCATAATCATTTGTGGATCTGTTTAATTTTCTTCTGCCTGA AATCCCGAC AAG ATAAAA ] consensusID : consensus_6553#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 469 fasta sequence [GCTGGGAGTGGTAGCGGCAGTGCCGTAACTACACATGTACTCAAAAAATTTAACACGAATAACAATAGTAATAATAATAACAGTTTGACTAATAGATCCGAATGTCTTGACAATGTTCAACGTACACAGCATGGTATGGATTTTACCAGTGCATTTCGTCAAACTAATTGCAATTTAGTCAAAGAGTCAAACAATAAACCGGAAATCAATCAATCATTTAATCATACAATGACAACTGGTGGAATTCCCAATAATCAGAGATGATGTAGTCTGTGTGTTCATTCATTCATATACATAAACTGACAGATAACTCTTTCTATAAATTGGTAATTATTTTGTTCTATTTATTTATTATTTGATACTTATTTACTACGTCTATTTATGCACCACCTAGAATACATTAGTTTCATGTGGATTTCAAATAATATTATTTGTGTTAATTTACCATTTTTATGCATAAAATTTCCCG] [+] EMBL CD066763 [GCTGGGAGTGGTAGCGGCAGTGCCGTAACTACACATGTACTCAAAAAATTTAACACGAATAACAATAGTAATAATAATAACAGTTTGACTAATAGATCCGAATGTCTTGACAATGTTCAACGTACACAGCATGGTATGGATTTTACCAGTGCATTTCGTCAAACTAATTGCAATTTAGTCAAAGAGTCAAACAATAAACCGGAAATCAATCAATCATTTAATCATACAATGACAACTGGTGGAATTCCCAATAATCAGAGATGATGTAGTCTGTGTGTTCATTCATTCATATACATAAACTGACAGATAACTCTTTCTATAAATTGGTAATTATTTTGTTCTATTTATTTATTATTTGATACTTATTTACTACGTCTATTTATGCACCACCTAGAATACATTAGTTTCATGTGGATTTCAAATAATATTATTTGTGTTAATTTACCATTTTTATGCATAAAATTTCCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6553#0 TGACCACACCACTAGATACCTCGGCTTCTAAAGGCCTTCCTTCCTTTAATAAGGGTATTC 60 consensus_6553#1 ------------------------------------------------------------ consensus_6553#0 AACGACGTACTGATCCATCAAGTGTACAAAGTCTTTCCGGCACAAGCAGTACTAGTTCTG 120 consensus_6553#1 ------------------------------------------------------------ consensus_6553#0 CGAGTCGCCAAAATGGAACTGGAGCAAGTGCTGCTGGGAGTGGTAGCGGCAGTGCCGTAA 180 consensus_6553#1 --------------------------------GCTGGGAGTGGTAGCGGCAGTGCCGTAA 28 **************************** consensus_6553#0 CTACACATGTACTCAAAAAATTTAACACGAATAACAATAGTAATAATAATAACAGTTTGA 240 consensus_6553#1 CTACACATGTACTCAAAAAATTTAACACGAATAACAATAGTAATAATAATAACAGTTTGA 88 ************************************************************ consensus_6553#0 CTAATAGATCCGAATGTCTTGACAATGTTCAACGTACACAGCATGGTATGGATTTTACCA 300 consensus_6553#1 CTAATAGATCCGAATGTCTTGACAATGTTCAACGTACACAGCATGGTATGGATTTTACCA 148 ************************************************************ consensus_6553#0 ATGCATTTCGTCAAACTAATTGCAATTTAGTCAAAGAGTCAAACAATAAACCGGAAATCA 360 consensus_6553#1 GTGCATTTCGTCAAACTAATTGCAATTTAGTCAAAGAGTCAAACAATAAACCGGAAATCA 208 *********************************************************** consensus_6553#0 ATCAATCATTTAATCATACAATGACAACTGGTGGAATTCCCAATAATCAGAGATGATGTA 420 consensus_6553#1 ATCAATCATTTAATCATACAATGACAACTGGTGGAATTCCCAATAATCAGAGATGATGTA 268 ************************************************************ consensus_6553#0 GTCTGTGTGTTCATTCATTCATATACATAAACTGACAGATAACTCTTTCTATAAATTGCT 480 consensus_6553#1 GTCTGTGTGTTCATTCATTCATATACATAAACTGACAGATAACTCTTTCTATAAATTGGT 328 ********************************************************** * consensus_6553#0 AATTAAT--GGCATAATCATTTGTGGATCTGTTTAATTTTCTTCTGCCTGAGAATCCGAC 538 consensus_6553#1 AATTATTTTGTTCTATTTATTTATTATTTGATACTTATTTACTACGTCTATTTATGCACC 388 ***** * * ** * **** * * * *** * * ** ** * * consensus_6553#0 AA--AGAATAAAATGTTACAGTGGAAAAGACATTCATCCTAATATTTTCAAACGATCTAC 596 consensus_6553#1 ACCTAGAATACATTAGTTTCATGTGGATTTCAAATAATATTATTTGTGTTAATTTACCAT 448 * ****** * * * ** * ** * * ** * * ** * * consensus_6553#0 TTTTTTCAGTAAAGTATATATAAATTATGTAACAAGATGACAATACATATGTATATAAAT 656 consensus_6553#1 TTTTATGCATAAAATTTCCCG--------------------------------------- 469 **** * **** * * consensus_6553#0 ATACATATGTCCGTATGTATTATTCTTCACACCTTCACCCGGT 699 consensus_6553#1 ------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||