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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6555#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 692 fasta sequence
[CGAGCGTGAAATAATGTTGTGTAGGCCAATCCATTCTGATCTAACGCTCCAGCTAGTGTTACTAGAACAGACAACCAAGAACTGAAAACAATGGCTTTAGCATCAGGATCTTCCCGTTTAATCACTTTTAAACGTTGAATAACAGCTCTCACTTTTGTACTATGATCACCCACTATATTTAAATCTCCTTCTATTTCTTCGGATTTCACTGAGTTTTCTTGATGCACCTTACTTCCAGCATAATGAATAAGTGTTAAAGGTCGTCTACGTCGAGCATTTAAACCCGCAGTTTCCATTGCTTGAAATGGTGTTCGACAGATTGGACATCTTCGTTGGGAAAATTGATTTAGTGATGCAATACGATCATGACAAGTGACACAAAGAGTATGCCAACAACCAGGAAGCAAAACAAAAGTTGGATTACATGGTGAATGTAACTGTAAGCAAGTTGGACATTCAAGTGGTCGACTTTTAGATTGTTCACCATTAGCATTATCATCTTCAGTTGAAGTAGAAAAGCCAGTTACTGCTGTTAAATGAGCGTTACGCAAGAAGTTAAAATGTCCAAGACGAGATTGAAGTCTAGGCCAAATTACGTCAGCTTCAACTATGTAGGAATGTAATTGGGCATCAACCTCATCCTCATGAATAAAAGCTAAATCTGTTGGACAAGTGGCTTGAAGACGAACAAC]
[-] EMBL AI977228 [CGAGCGTGAAATAATGTTGTGTAGGCCAATCCATTCTGATCTAACGCTCCAGCTAGTGTTACTAGAACAGACAACCAAGAACTGAAAACAATGGCTTTAGCATCAGGATCTTCCCGTTTAATCACTTTTAAACGTTGAATAACAGCTCTCACTTTTGTACTATGATCACCCACTATATTTAAATCTCCTTCTATTTCTTCGGATTTCACTGAGTTTTCTTGATGCACCTTACTTCCAGCATAATGAATAAGTGTTAAAGGTCGTCTACGTCGAGCATTTAAACCCGCAGTTTCCATTGCTTGAAATGGTGTTCGACAGATTGGACATCTTCGTTGGGAAAATTGATTTAGTGATGCAATACGATCATGACAAGTGACACAAAGAGTATGCCAACAACCAGGAAGCAAAACAAAAGTTGGATTACATGGTGAATGTAACTGTAAGCAAGTTGGACATTCAAGTGGTCGACTTTTAGATTGTTCACCATTAGCATTATCATCTTCAGTTGAAGTAGAAAAGCCAGTTACTGCTGTTAAATGAGCGTTACGCAAGAAGTTAAAATGTCCAAGACGAGATTGAAGTCT ]
[+] EMBL CD066932 [ AAAGTTGGATTACATGGCGAATGTAACTGTAAGCAAGTTGGACATTCAAGTGGTCGACTTTTAGATTGTTCACCATTAGCATTATCATCTTCAGTTGAAGTAGAAAAGCCAGTTACTGCTGTTAAATGAGCGTTACGCAAGAAGTTAAAATGTCCAAGACGAGATTGAAGTCTAGGCCAAATTACGTCAGCTTCAACTATGTAGGAATGTAATTGGGCATCAACCTCATCCTCATGAATAAAAGCTAAATCTGTTGGACAAGTGGCTTGAAGACGAACAAC]
consensusID : consensus_6555#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 632 fasta sequence
[GAGCTTCTCTGNCATGTGATACNACAGGATCAACGAAAAGTACATGATNTGCTGAAGTCAAATTTAGACCATTAGCGCCAAGTTGGACTGGCATCAAAAGAATCCATGTTGTAGAACCGAAACACTGAAAACCAGCCAATCTGCCTGGACAACAAGCGTCACGAGCGTGAAATAATGTTGTGTAGGCCAATCCATTCTGATCTAACGCTCCAGCTAGTGTTACTAGAACAGACAACCAAGAACTGAAAACAATGGCTTTAGCATCAGGATCTTCCCGTTTAATCACTTTTAAACGTTGAATAACAGCTCTCACTTTTGTACTATGATCACCCACTATATTTAAATCTCCTTCTATTTCTTCGGATTTCACTGAGTTTTCTTGATGCACCTTACTTCCAGCATAATGAATAAGTGTTAAAGGTCGTCTACGTCGAGCATTTAAACCCGCAGTTTCCATTGCTTGAAATGGTGTTCGACAGATTGGACATCTTCGTTGGGAAAATTGATTTAGTGATGCAATACGATCATGACAAGTGACACAAAGAGTATGCCAACAACCAGGAAGCAAAACGAAAGTTGGATTACATGGAGAATGTAACTGTAAGCAAGTTGGACATTCAAGCTCTCGTACG]
[-] EMBL CD082324 [GAGCTTCTCTGNCATGTGATACNACAGGATCAACGAAAAGTACATGATNTGCTGAAGTCAAATTTAGACCATTAGCGCCAAGTTGGACTGGCATCAAAAGAATCCATGTTGTAGAACCGAAACACTGAAAACCAGCCAATCTGCCTGGACAACAAGCGTCACGAGCGTGAAATAATGTTGTGTAGGCCAATCCATTCTGATCTAACGCTCCAGCTAGTGTTACTAGAACAGACAACCAAGAACTGAAAACAATGGCTTTAGCATCAGGATCTTCCCGTTTAATCACTTTTAAACGTTGAATAACAGCTCTCACTTTTGTACTATGATCACCCACTATATTTAAATCTCCTTCTATTTCTTCGGATTTCACTGAGTTTTCTTGATGCACCTTACTTCCAGCATAATGAATAAGTGTTAAAGGTCGTCTACGTCGAGCATTTAAACCCGCAGTTTCCATTGCTTGAAATGGTGTTCGACAGATTGGACATCTTCGTTGGGAAAATTGATTTAGTGATGCAATACGATCATGACAAGTGACACAAAGAGTATGCCAACAACCAGGAAGCAAAACGAAAGTTGGATTACATGGAGAATGTAACTGTAAGCAAGTTGGACATTCAAGCTCTCGTACG]
consensusID : consensus_6555#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 569 fasta sequence
[AACTGTAAGCAAGTTGGACATTCAAGTGGTCGACTTTTAGATTGTTCACCATTAGCATTATCATCTTCAGTTGAAGTAGAAAAGCCAGTTACTGCTGTTAAATGAGCGTTACGCAAGAAGTTAAAATGTCCAAGACGACATTGAAGTCTAGGCCAAATTACGTCAGCTTCAACTATGTAGGAATGTAATTGGGCATCAACCTATATAGATAAAATATTGAGATGATGTGTCAAAGTTGTAAACAGATAAGTATTTATTTAATATTAACATAACAACAAGTTAATTACCTCATCCTCATGAATAAAAGCTAAATCTGTTGGACAAGTGGCTTGAAGACGAACAACAAACTGTTCGGTATCATCGTGTATATTCCACCATTCCATGGTTAGTGACTGTGTACGGCTGGTTAGCTACAGAAAATTACAAGGTAAAATAAAAAAACGGACTAATTTACGCANATCATAGATTCTTAACAGAATATACTTTAATAGTCATCCACCAGATATGGACCAAGTATATACACATGATGATGAAACATAAATCTTACACTTGATAACCATTTTAAACAA]
[+] EMBL CD158999 [AACTGTAAGCAAGTTGGACATTCAAGTGGTCGACTTTTAGATTGTTCACCATTAGCATTATCATCTTCAGTTGAAGTAGAAAAGCCAGTTACTGCTGTTAAATGAGCGTTACGCAAGAAGTTAAAATGTCCAAGACGACATTGAAGTCTAGGCCAAATTACGTCAGCTTCAACTATGTAGGAATGTAATTGGGCATCAACCTATATAGATAAAATATTGAGATGATGTGTCAAAGTTGTAAACAGATAAGTATTTATTTAATATTAACATAACAACAAGTTAATTACCTCATCCTCATGAATAAAAGCTAAATCTGTTGGACAAGTGGCTTGAAGACGAACAACAAACTGTTCGGTATCATCGTGTATATTCCACCATTCCATGGTTAGTGACTGTGTACGGCTGGTTAGCTACAGAAAATTACAAGGTAAAATAAAAAAACGGACTAATTTACGCANATCATAGATTCTTAACAGAATATACTTTAATAGTCATCCACCAGATATGGACCAAGTATATACACATGATGATGAAACATAAATCTTACACTTGATAACCATTTTAAACAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6555#0 ------------------------------------------------------------
consensus_6555#1 GAGCTTCTCTGNCATGTGATACNACAGGATCAACGAAAAGTACATGATNTGCTGAAGTCA 60
consensus_6555#2 ------------------------------------------AACTGTAAGCAAGTTGGA 18
consensus_6555#0 ------------------------------------------------------------
consensus_6555#1 AATTTAGACCATTAGCGCCAAGTTGGACTGGCATCAAAAGAATCCATGTTGTAGAACCGA 120
consensus_6555#2 CATTCAAGTGGTCGACTTTTAGATTGTTCACCATTAGCA----TTATCATCTTCAGTTGA 74
consensus_6555#0 -----------------------------------------CGAGCGTGAAATAATGTTG 19
consensus_6555#1 AACACTGAAAACCAGCCAATCTGCCTGGACAACAAGCGTCACGAGCGTGAAATAATGTTG 180
consensus_6555#2 AGTAG-AAAAGCCAGTTACTG---CTGTTAAATGAGCGTTACG--CAAGAAGTTAAAATG 128
** * *** * * **
consensus_6555#0 TGTAGGCCAATCCATTCTGATCTAACGCTCCAGCTAGTGTTACTAGAACAGACAACCAAG 79
consensus_6555#1 TGTAGGCCAATCCATTCTGATCTAACGCTCCAGCTAGTGTTACTAGAACAGACAACCAAG 240
consensus_6555#2 TCCAAGACGA--CATTGAAGTCTAGG---CCAAATTACGTCA---GCTTCAACTATGTAG 180
* * * * * **** **** *** * ** * * ** * **
consensus_6555#0 AACTGAAAACAATGGCTTTAGCATCAGGATCTTCCCGTTTAATCACTTTTAAACGTTGAA 139
consensus_6555#1 AACTGAAAACAATGGCTTTAGCATCAGGATCTTCCCGTTTAATCACTTTTAAACGTTGAA 300
consensus_6555#2 GAATGTAATTGGGCATCAACCTATATAGATAAAATATTGAGATGATGTGTCAAAGTTGTA 240
* ** ** ** *** * ** * * * ** **** *
consensus_6555#0 TAACAGCTCTCACTTTTGTACTATGATCACCCACTATATTTAAATCTCCTTCTATTTCTT 199
consensus_6555#1 TAACAGCTCTCACTTTTGTACTATGATCACCCACTATATTTAAATCTCCTTCTATTTCTT 360
consensus_6555#2 AACAGATAAGTATTTATTTAATATTAACATA-ACAACAAGTTAATTACCTC--ATCCTCA 297
* * ** * ** *** * ** ** * * * *** *** **
consensus_6555#0 CGGATTTCACTGAGTTTTCTTGATGCACCTTACTTCCAGCATAATGAATAAGTGTTAAAG 259
consensus_6555#1 CGGATTTCACTGAGTTTTCTTGATGCACCTTACTTCCAGCATAATGAATAAGTGTTAAAG 420
consensus_6555#2 TGAATAAAAGCTAAATCTGTTGG-ACAAGTGGCTTGAAGACGAACAACAAACTGTTCGGT 356
* ** * * * * *** ** * *** ** ** * ** ****
consensus_6555#0 GTCGTCTACGTCGAGCATTTAAACCCGCAGTTTCCATTGCTTGAAATGGTGTTCGACAGA 319
consensus_6555#1 GTCGTCTACGTCGAGCATTTAAACCCGCAGTTTCCATTGCTTGAAATGGTGTTCGACAGA 480
consensus_6555#2 ATCATC--------GTGTATATTCCACCA--TTCCATGGTTAGTGACTGTGTACGGCTGG 406
** ** * * ** ** ** ****** * * * * **** ** * *
consensus_6555#0 TTGGACATCT----TCGTTGGGAAAATTGATTTAGTGATGCAAT--ACGATCATGACAAG 373
consensus_6555#1 TTGGACATCT----TCGTTGGGAAAATTGATTTAGTGATGCAAT--ACGATCATGACAAG 534
consensus_6555#2 TTAGCTACAGAAAATTACAAGGTAAAATAAAAAAACGGACTAATTTACGCANATCATAGA 466
** * * * ** *** * * * * *** *** ** * *
consensus_6555#0 TGACACAAAGAGTATGCC--AACAACCAGGAAGCAAAACAAAAGTTGGATTACATGGTGA 431
consensus_6555#1 TGACACAAAGAGTATGCC--AACAACCAGGAAGCAAAACGAAAGTTGGATTACATGGAGA 592
consensus_6555#2 TTCTTAACAGAATATACTTTAATAGTCATCCACCAGA--TATGGACCAAGTATATACACA 524
* * *** *** * ** * ** * ** * * * * ** ** *
consensus_6555#0 ATGTAACTGTAAGCAAGTTGGACATTCAAGTGGTCGACTTTTAGATTGTTCACCATTAGC 491
consensus_6555#1 ATGTAACTGTAAGCAAGTTGGACATTCAAGCTCTCGTACG-------------------- 632
consensus_6555#2 TGATGATGAAACATAAATCTTACACTTGATAACCATTTTAAACAA--------------- 569
* * * ** * *** * *
consensus_6555#0 ATTATCATCTTCAGTTGAAGTAGAAAAGCCAGTTACTGCTGTTAAATGAGCGTTACGCAA 551
consensus_6555#1 ------------------------------------------------------------
consensus_6555#2 ------------------------------------------------------------
consensus_6555#0 GAAGTTAAAATGTCCAAGACGAGATTGAAGTCTAGGCCAAATTACGTCAGCTTCAACTAT 611
consensus_6555#1 ------------------------------------------------------------
consensus_6555#2 ------------------------------------------------------------
consensus_6555#0 GTAGGAATGTAATTGGGCATCAACCTCATCCTCATGAATAAAAGCTAAATCTGTTGGACA 671
consensus_6555#1 ------------------------------------------------------------
consensus_6555#2 ------------------------------------------------------------
consensus_6555#0 AGTGGCTTGAAGACGAACAAC 692
consensus_6555#1 ---------------------
consensus_6555#2 ---------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||