These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6555#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 692 fasta sequence [CGAGCGTGAAATAATGTTGTGTAGGCCAATCCATTCTGATCTAACGCTCCAGCTAGTGTTACTAGAACAGACAACCAAGAACTGAAAACAATGGCTTTAGCATCAGGATCTTCCCGTTTAATCACTTTTAAACGTTGAATAACAGCTCTCACTTTTGTACTATGATCACCCACTATATTTAAATCTCCTTCTATTTCTTCGGATTTCACTGAGTTTTCTTGATGCACCTTACTTCCAGCATAATGAATAAGTGTTAAAGGTCGTCTACGTCGAGCATTTAAACCCGCAGTTTCCATTGCTTGAAATGGTGTTCGACAGATTGGACATCTTCGTTGGGAAAATTGATTTAGTGATGCAATACGATCATGACAAGTGACACAAAGAGTATGCCAACAACCAGGAAGCAAAACAAAAGTTGGATTACATGGTGAATGTAACTGTAAGCAAGTTGGACATTCAAGTGGTCGACTTTTAGATTGTTCACCATTAGCATTATCATCTTCAGTTGAAGTAGAAAAGCCAGTTACTGCTGTTAAATGAGCGTTACGCAAGAAGTTAAAATGTCCAAGACGAGATTGAAGTCTAGGCCAAATTACGTCAGCTTCAACTATGTAGGAATGTAATTGGGCATCAACCTCATCCTCATGAATAAAAGCTAAATCTGTTGGACAAGTGGCTTGAAGACGAACAAC] [-] EMBL AI977228 [CGAGCGTGAAATAATGTTGTGTAGGCCAATCCATTCTGATCTAACGCTCCAGCTAGTGTTACTAGAACAGACAACCAAGAACTGAAAACAATGGCTTTAGCATCAGGATCTTCCCGTTTAATCACTTTTAAACGTTGAATAACAGCTCTCACTTTTGTACTATGATCACCCACTATATTTAAATCTCCTTCTATTTCTTCGGATTTCACTGAGTTTTCTTGATGCACCTTACTTCCAGCATAATGAATAAGTGTTAAAGGTCGTCTACGTCGAGCATTTAAACCCGCAGTTTCCATTGCTTGAAATGGTGTTCGACAGATTGGACATCTTCGTTGGGAAAATTGATTTAGTGATGCAATACGATCATGACAAGTGACACAAAGAGTATGCCAACAACCAGGAAGCAAAACAAAAGTTGGATTACATGGTGAATGTAACTGTAAGCAAGTTGGACATTCAAGTGGTCGACTTTTAGATTGTTCACCATTAGCATTATCATCTTCAGTTGAAGTAGAAAAGCCAGTTACTGCTGTTAAATGAGCGTTACGCAAGAAGTTAAAATGTCCAAGACGAGATTGAAGTCT ] [+] EMBL CD066932 [ AAAGTTGGATTACATGGCGAATGTAACTGTAAGCAAGTTGGACATTCAAGTGGTCGACTTTTAGATTGTTCACCATTAGCATTATCATCTTCAGTTGAAGTAGAAAAGCCAGTTACTGCTGTTAAATGAGCGTTACGCAAGAAGTTAAAATGTCCAAGACGAGATTGAAGTCTAGGCCAAATTACGTCAGCTTCAACTATGTAGGAATGTAATTGGGCATCAACCTCATCCTCATGAATAAAAGCTAAATCTGTTGGACAAGTGGCTTGAAGACGAACAAC] consensusID : consensus_6555#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 632 fasta sequence [GAGCTTCTCTGNCATGTGATACNACAGGATCAACGAAAAGTACATGATNTGCTGAAGTCAAATTTAGACCATTAGCGCCAAGTTGGACTGGCATCAAAAGAATCCATGTTGTAGAACCGAAACACTGAAAACCAGCCAATCTGCCTGGACAACAAGCGTCACGAGCGTGAAATAATGTTGTGTAGGCCAATCCATTCTGATCTAACGCTCCAGCTAGTGTTACTAGAACAGACAACCAAGAACTGAAAACAATGGCTTTAGCATCAGGATCTTCCCGTTTAATCACTTTTAAACGTTGAATAACAGCTCTCACTTTTGTACTATGATCACCCACTATATTTAAATCTCCTTCTATTTCTTCGGATTTCACTGAGTTTTCTTGATGCACCTTACTTCCAGCATAATGAATAAGTGTTAAAGGTCGTCTACGTCGAGCATTTAAACCCGCAGTTTCCATTGCTTGAAATGGTGTTCGACAGATTGGACATCTTCGTTGGGAAAATTGATTTAGTGATGCAATACGATCATGACAAGTGACACAAAGAGTATGCCAACAACCAGGAAGCAAAACGAAAGTTGGATTACATGGAGAATGTAACTGTAAGCAAGTTGGACATTCAAGCTCTCGTACG] [-] EMBL CD082324 [GAGCTTCTCTGNCATGTGATACNACAGGATCAACGAAAAGTACATGATNTGCTGAAGTCAAATTTAGACCATTAGCGCCAAGTTGGACTGGCATCAAAAGAATCCATGTTGTAGAACCGAAACACTGAAAACCAGCCAATCTGCCTGGACAACAAGCGTCACGAGCGTGAAATAATGTTGTGTAGGCCAATCCATTCTGATCTAACGCTCCAGCTAGTGTTACTAGAACAGACAACCAAGAACTGAAAACAATGGCTTTAGCATCAGGATCTTCCCGTTTAATCACTTTTAAACGTTGAATAACAGCTCTCACTTTTGTACTATGATCACCCACTATATTTAAATCTCCTTCTATTTCTTCGGATTTCACTGAGTTTTCTTGATGCACCTTACTTCCAGCATAATGAATAAGTGTTAAAGGTCGTCTACGTCGAGCATTTAAACCCGCAGTTTCCATTGCTTGAAATGGTGTTCGACAGATTGGACATCTTCGTTGGGAAAATTGATTTAGTGATGCAATACGATCATGACAAGTGACACAAAGAGTATGCCAACAACCAGGAAGCAAAACGAAAGTTGGATTACATGGAGAATGTAACTGTAAGCAAGTTGGACATTCAAGCTCTCGTACG] consensusID : consensus_6555#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 569 fasta sequence [AACTGTAAGCAAGTTGGACATTCAAGTGGTCGACTTTTAGATTGTTCACCATTAGCATTATCATCTTCAGTTGAAGTAGAAAAGCCAGTTACTGCTGTTAAATGAGCGTTACGCAAGAAGTTAAAATGTCCAAGACGACATTGAAGTCTAGGCCAAATTACGTCAGCTTCAACTATGTAGGAATGTAATTGGGCATCAACCTATATAGATAAAATATTGAGATGATGTGTCAAAGTTGTAAACAGATAAGTATTTATTTAATATTAACATAACAACAAGTTAATTACCTCATCCTCATGAATAAAAGCTAAATCTGTTGGACAAGTGGCTTGAAGACGAACAACAAACTGTTCGGTATCATCGTGTATATTCCACCATTCCATGGTTAGTGACTGTGTACGGCTGGTTAGCTACAGAAAATTACAAGGTAAAATAAAAAAACGGACTAATTTACGCANATCATAGATTCTTAACAGAATATACTTTAATAGTCATCCACCAGATATGGACCAAGTATATACACATGATGATGAAACATAAATCTTACACTTGATAACCATTTTAAACAA] [+] EMBL CD158999 [AACTGTAAGCAAGTTGGACATTCAAGTGGTCGACTTTTAGATTGTTCACCATTAGCATTATCATCTTCAGTTGAAGTAGAAAAGCCAGTTACTGCTGTTAAATGAGCGTTACGCAAGAAGTTAAAATGTCCAAGACGACATTGAAGTCTAGGCCAAATTACGTCAGCTTCAACTATGTAGGAATGTAATTGGGCATCAACCTATATAGATAAAATATTGAGATGATGTGTCAAAGTTGTAAACAGATAAGTATTTATTTAATATTAACATAACAACAAGTTAATTACCTCATCCTCATGAATAAAAGCTAAATCTGTTGGACAAGTGGCTTGAAGACGAACAACAAACTGTTCGGTATCATCGTGTATATTCCACCATTCCATGGTTAGTGACTGTGTACGGCTGGTTAGCTACAGAAAATTACAAGGTAAAATAAAAAAACGGACTAATTTACGCANATCATAGATTCTTAACAGAATATACTTTAATAGTCATCCACCAGATATGGACCAAGTATATACACATGATGATGAAACATAAATCTTACACTTGATAACCATTTTAAACAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6555#0 ------------------------------------------------------------ consensus_6555#1 GAGCTTCTCTGNCATGTGATACNACAGGATCAACGAAAAGTACATGATNTGCTGAAGTCA 60 consensus_6555#2 ------------------------------------------AACTGTAAGCAAGTTGGA 18 consensus_6555#0 ------------------------------------------------------------ consensus_6555#1 AATTTAGACCATTAGCGCCAAGTTGGACTGGCATCAAAAGAATCCATGTTGTAGAACCGA 120 consensus_6555#2 CATTCAAGTGGTCGACTTTTAGATTGTTCACCATTAGCA----TTATCATCTTCAGTTGA 74 consensus_6555#0 -----------------------------------------CGAGCGTGAAATAATGTTG 19 consensus_6555#1 AACACTGAAAACCAGCCAATCTGCCTGGACAACAAGCGTCACGAGCGTGAAATAATGTTG 180 consensus_6555#2 AGTAG-AAAAGCCAGTTACTG---CTGTTAAATGAGCGTTACG--CAAGAAGTTAAAATG 128 ** * *** * * ** consensus_6555#0 TGTAGGCCAATCCATTCTGATCTAACGCTCCAGCTAGTGTTACTAGAACAGACAACCAAG 79 consensus_6555#1 TGTAGGCCAATCCATTCTGATCTAACGCTCCAGCTAGTGTTACTAGAACAGACAACCAAG 240 consensus_6555#2 TCCAAGACGA--CATTGAAGTCTAGG---CCAAATTACGTCA---GCTTCAACTATGTAG 180 * * * * * **** **** *** * ** * * ** * ** consensus_6555#0 AACTGAAAACAATGGCTTTAGCATCAGGATCTTCCCGTTTAATCACTTTTAAACGTTGAA 139 consensus_6555#1 AACTGAAAACAATGGCTTTAGCATCAGGATCTTCCCGTTTAATCACTTTTAAACGTTGAA 300 consensus_6555#2 GAATGTAATTGGGCATCAACCTATATAGATAAAATATTGAGATGATGTGTCAAAGTTGTA 240 * ** ** ** *** * ** * * * ** **** * consensus_6555#0 TAACAGCTCTCACTTTTGTACTATGATCACCCACTATATTTAAATCTCCTTCTATTTCTT 199 consensus_6555#1 TAACAGCTCTCACTTTTGTACTATGATCACCCACTATATTTAAATCTCCTTCTATTTCTT 360 consensus_6555#2 AACAGATAAGTATTTATTTAATATTAACATA-ACAACAAGTTAATTACCTC--ATCCTCA 297 * * ** * ** *** * ** ** * * * *** *** ** consensus_6555#0 CGGATTTCACTGAGTTTTCTTGATGCACCTTACTTCCAGCATAATGAATAAGTGTTAAAG 259 consensus_6555#1 CGGATTTCACTGAGTTTTCTTGATGCACCTTACTTCCAGCATAATGAATAAGTGTTAAAG 420 consensus_6555#2 TGAATAAAAGCTAAATCTGTTGG-ACAAGTGGCTTGAAGACGAACAACAAACTGTTCGGT 356 * ** * * * * *** ** * *** ** ** * ** **** consensus_6555#0 GTCGTCTACGTCGAGCATTTAAACCCGCAGTTTCCATTGCTTGAAATGGTGTTCGACAGA 319 consensus_6555#1 GTCGTCTACGTCGAGCATTTAAACCCGCAGTTTCCATTGCTTGAAATGGTGTTCGACAGA 480 consensus_6555#2 ATCATC--------GTGTATATTCCACCA--TTCCATGGTTAGTGACTGTGTACGGCTGG 406 ** ** * * ** ** ** ****** * * * * **** ** * * consensus_6555#0 TTGGACATCT----TCGTTGGGAAAATTGATTTAGTGATGCAAT--ACGATCATGACAAG 373 consensus_6555#1 TTGGACATCT----TCGTTGGGAAAATTGATTTAGTGATGCAAT--ACGATCATGACAAG 534 consensus_6555#2 TTAGCTACAGAAAATTACAAGGTAAAATAAAAAAACGGACTAATTTACGCANATCATAGA 466 ** * * * ** *** * * * * *** *** ** * * consensus_6555#0 TGACACAAAGAGTATGCC--AACAACCAGGAAGCAAAACAAAAGTTGGATTACATGGTGA 431 consensus_6555#1 TGACACAAAGAGTATGCC--AACAACCAGGAAGCAAAACGAAAGTTGGATTACATGGAGA 592 consensus_6555#2 TTCTTAACAGAATATACTTTAATAGTCATCCACCAGA--TATGGACCAAGTATATACACA 524 * * *** *** * ** * ** * ** * * * * ** ** * consensus_6555#0 ATGTAACTGTAAGCAAGTTGGACATTCAAGTGGTCGACTTTTAGATTGTTCACCATTAGC 491 consensus_6555#1 ATGTAACTGTAAGCAAGTTGGACATTCAAGCTCTCGTACG-------------------- 632 consensus_6555#2 TGATGATGAAACATAAATCTTACACTTGATAACCATTTTAAACAA--------------- 569 * * * ** * *** * * consensus_6555#0 ATTATCATCTTCAGTTGAAGTAGAAAAGCCAGTTACTGCTGTTAAATGAGCGTTACGCAA 551 consensus_6555#1 ------------------------------------------------------------ consensus_6555#2 ------------------------------------------------------------ consensus_6555#0 GAAGTTAAAATGTCCAAGACGAGATTGAAGTCTAGGCCAAATTACGTCAGCTTCAACTAT 611 consensus_6555#1 ------------------------------------------------------------ consensus_6555#2 ------------------------------------------------------------ consensus_6555#0 GTAGGAATGTAATTGGGCATCAACCTCATCCTCATGAATAAAAGCTAAATCTGTTGGACA 671 consensus_6555#1 ------------------------------------------------------------ consensus_6555#2 ------------------------------------------------------------ consensus_6555#0 AGTGGCTTGAAGACGAACAAC 692 consensus_6555#1 --------------------- consensus_6555#2 --------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||