These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6558#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 735 fasta sequence [ATTGTGTCTAAATAGGGGGATTCCATATTTACATTGTAACGAAATCTGAATGGATGAAAATAACATAACGGCTAGCTCACAAATAGAAAACGCACAACCTAATACACAACTCAGCCAAACAGTTAAAAGGCTCCATTGGTTAATGTATTATTTTTGACACATGACCAGAAGGATGGCAAGCTAACCAACTAATTGGCTACGTTCACTGAAAAATGTTAAAGATTAGCATTACTCACTCGGTAGATCTCTGGCGGGATACCTTTTGAAATAACTCCTAAGGCTTCGTAAATCACTCGTCCTGATAACCGTTATTAGATAACTCCCAACGGCCCATAAATTTCCGAAGATAATACGGGGTGTTGGCTACAGTTAACCGTACAGCGCAGATCACAAAACCACAAGTACACAAGGTGAATACGAGCAGAAAGATGAATGCAGGCGAGCACCAGCGGGCAAGAAAGGGCAAATAAATTATAGGATTTAGGAAGCACATATATATGGGGAAGCGAATGAGTCGTCAAGCGATCTAAGCAACTAACATTTAAGCTAGTAAGAGGGATGTGTTAGACTGTAACACATGATCAACCATACATGCTCATGCATATGTAGTGATTATAATACAAAGACATAGACGAATCGTTACTGTCCGAATGACATTGTCTGTTAAATAAATTCACCGAAGGGCTTGACAAAATTAAACGTACATAGACTCAAGTTTGAGGTGCTACAAACTAC] [-] EMBL CD067024 [ATTGTGTCTAAATAGGGGGATTCCATATTTACATTGTAACGAAATCTGAATGGATGAAAATAACATAACGGCTAGCTCACAAATAGAAAACGCACAACCTAATACACAACTCAGCCAAACAGTTAAAAGGCTCCATTGGTTAATGTATTATTTTTGACACATGACCAGAAGGATGGCAAGCTAACCAACTAATTGGCTACGTTCACTGAAAAATGTTAAAGATTAGCATTACTCACTCGGTAGATCTCTGGCGGGATACCTTTTGAAATAACTCCTAAGGCTTCGTc ] [+] EMBL CD169236 [ gaTCGGTAGATCTCTGGCGGGATACC TTTGAAATAACTCCTAAGGCTTCGTAAATCACTCGTCCTGATAACCGTTATTAGATAACTCCCAACGGCCCATAAATTTCCGAAGATAATACGGGGTGTTGGCTACAGTTAACCGTACAGCGCAGATCACAAAACCACAAGTACACAAGGTGAATACGAGCAGAAAGATGAATGCAGGCGAGCACCAGCGGGCAAGAAAGGGCAAATAAATTATAGGATTTAGGAAGCACATATATATGGGGAAGCGAATGAGTCGTCAAGCGATCTAAGCAACTAACATTTAAGCTAGTAAGAGGGATGTGTTAGACTGTAACACATGATCAACCATACATGCTCATGCATATGTAGTGATTATAATACAAAGACATAGACGAATCGTTACTGTCCGAATGACATTGTCTGTTAAATAAATTCACCGAAGGGCTTGACAAAATTAAACGTACATAGACTCAAGTTTGAGGTGCTACAAACTAC] [-] EMBL CD067025 [ AAATAACTCCTAAGGCTTCGTAAATCACTCGTCCTGATAACCGTTATTAGATAACTCCCAACGGCCCATAAATTTCCGAAGATAATACGGGGTGTTGGCTA ] consensusID : consensus_6558#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 289 fasta sequence [CAGCAGTTGAGCCTGCCAATAAGGATATAAGATGTGCATGATTAATGTTTGTACTCATGTTCAATTAAGGATGATAAAGTTACAGTCCGTTTTCATACAAGATAATCGGTAGATCTCTGGCGGGATACCTTTGAAATAACTCCTAAGGCTTCGTAAATCACTCGTCCTGATAACCGTTATTAGATAACTCCCAACGGCCCATAAATTTCCGAAGATAATACGGGGTGTTGGAAACTACAGTAGGTTCGACAAAATTCTAAATAGCGCCTCGTGCCGAATTCTGGCCGTC] [-] EMBL CD077783 [CAGCAGTTGAGCCTGCCAATAAGGATATAAGATGTGCATGATTAATGTTTGTACTCATGTTCAATTAAGGATGATAAAGTTACAGTCCGTTTTCATACAAGATAATCGGTAGATCTCTGGCGGGATACCTTTGAAATAACTCCTAAGGCTTCGTAAATCACTCGTCCTGATAACCGTTATTAGATAACTCCCAACGGCCCATAAATTTCCGAAGATAATACGGGGTGTTGGAAACTACAGTAGGTTCGACAAAATTCTAAATAGCGCCTCGTGCCGAATTCTGGCCGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6558#0 ATTGTGTCTAAATAGGGGGATTCCATATTTACATTGTAACGAAATCTGAATGGATGAAAA 60 consensus_6558#1 ------------------------------------------------------------ consensus_6558#0 TAACATAACGGCTAGCTCACAAATAGAAAACGCACAACCTAATACACAACTCAGCCAAAC 120 consensus_6558#1 ------------------------------------------------------------ consensus_6558#0 AGTTAAAAGGCTCCATTGGTTAA-TGTATTATTTTTGACACATGACCAGAAGGATGGCAA 179 consensus_6558#1 -------------CAGCAGTTGAGCCTGCCAATAAGGATATAAGATGTGCATGATTAATG 47 ** *** * * * * ** * * ** * * *** consensus_6558#0 GCTAACCAACTAATTGGCTACGTTCACTGAAAA-ATGTTAAAGATTAGCATTACTCACTC 238 consensus_6558#1 TTTGTACTCATGTTCAATTAAGGATGATAAAGTTACAGTCCGTTTTCATACAAGATAATC 107 * * * * ** * * ** * * ** * * * ** consensus_6558#0 GGTAGATCTCTGGCGGGATACCTTTTGAAATAACTCCTAAGGCTTCGTAAATCACTCGTC 298 consensus_6558#1 GGTAGATCTCTGGCGGGATACCTTT-GAAATAACTCCTAAGGCTTCGTAAATCACTCGTC 166 ************************* ********************************** consensus_6558#0 CTGATAACCGTTATTAGATAACTCCCAACGGCCCATAAATTTCCGAAGATAATACGGGGT 358 consensus_6558#1 CTGATAACCGTTATTAGATAACTCCCAACGGCCCATAAATTTCCGAAGATAATACGGGGT 226 ************************************************************ consensus_6558#0 GTTGGCTACAGTTAACCGTACAGCGCAGATCACAAAACCACAAGTACACAAGGTGAATAC 418 consensus_6558#1 GTTGGAAACTACAGTAGGTTCGACAAAATTCTAAATAGCGC-----CTCGTGCCGAATTC 281 ***** ** ** * * * ** ** * * * * * * **** * consensus_6558#0 GAGCAGAAAGATGAATGCAGGCGAGCACCAGCGGGCAAGAAAGGGCAAATAAATTATAGG 478 consensus_6558#1 TGGCCGTC---------------------------------------------------- 289 ** * consensus_6558#0 ATTTAGGAAGCACATATATATGGGGAAGCGAATGAGTCGTCAAGCGATCTAAGCAACTAA 538 consensus_6558#1 ------------------------------------------------------------ consensus_6558#0 CATTTAAGCTAGTAAGAGGGATGTGTTAGACTGTAACACATGATCAACCATACATGCTCA 598 consensus_6558#1 ------------------------------------------------------------ consensus_6558#0 TGCATATGTAGTGATTATAATACAAAGACATAGACGAATCGTTACTGTCCGAATGACATT 658 consensus_6558#1 ------------------------------------------------------------ consensus_6558#0 GTCTGTTAAATAAATTCACCGAAGGGCTTGACAAAATTAAACGTACATAGACTCAAGTTT 718 consensus_6558#1 ------------------------------------------------------------ consensus_6558#0 GAGGTGCTACAAACTAC 735 consensus_6558#1 ----------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||