cluster # 6563

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Schistosoma mansoni
cluster # 6563 cluster # 6563 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6563#0 length = 522 sequences # 2

consensus_6563#1 length = 334 sequences # 1
consensus_6563#2 length = 237 sequences # 1

consensusID : consensus_6563#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 522
fasta sequence

                              [AATAAGAAACGTAAACATGTTGAAATACTTTATGCTGAGAATTCGATTTTGTACCAAATAATATAATATTGAATAAAGCTAATAATAATAATAATACATACATTAGCCTATCGTTAGCACAAGTTACCACAACGTGCAGTGTTCATTTTATATGTATATTTTTCTAAAACAATTAGTTTATGCTTGCTTCGTTAATTCTGATTCTCTGTGTGAATATATAGGAAAGCACCGTGATAACTAATCAATACTCTGCTACATGGCATTCCAAAGGTACGCCTCTAACTGGTGATGGTCAAGGATTACCTGGTGTATTTTTCAATTATGAAATAGCCCCTTTACTTGTTAAAATTACCGAAGAGAAAAAGTAAGCACTCTAATAAAATTACGTCGAAAATATTGTAGTGTATATAAAAGATATTCACATGATAAATCTGTATCCTTTACTATGATTTAGTTCATACTTGATGAGATGAGTAAAATCAATGCTGATTGATAGATGATGTGCAATGATACAATGTGTCT]

[+] EMBL CD067253             [AATAAGAAACGTAAACATGTTGAAATACTTTATGCTGAGAATTCGATTTTGTACCAAATAATATAATATTGAATAAAGCTAATAATAATAATAATACATACATTAGCCTATCGTTAGCACAAGTTACCACAACGTGCAGTGTTCATTTTATATGTATATTTTTCTAAAACAATTAGTTTATGCTTGCTTCGTTAATTCTGATTCTCTGTGTGAATATATAGGAAAGCACCGTGATAACTAATCAATACTCTGCTACATGGCATTCCAAAGGTACGCCTCTAACTGGTGATGGTCAAGGATTACCTGGTGTATTTTTCAATTATGAAATAGCCCCTTTACTTGTTAAAATTACCGAAGAGAAAAAGTAAGCACTCTAATAAAATTACGTCGAAAATATTGTAGTGTATATAAAAGATATTCACATGATAAATCTGTATCCTTTACTATGATTTAGTTCATACTTGATGAGATGAGTAAAATCAATGCTGATTGATAGATGATGTGCAATGATACAATGTGTCT]
[+] EMBL CD067252             [AATAAGAAACGTAAACATGTTGAAATACTTTATGCTGAGAATTCGATTTTGTACCAAATAATATAATATTGAATAAAGCTAATAATAATAATAATACATACATTAGCCTATCGTTAGCACAAGTTACCACAACGTCCAGTGGTCATTTTATATGTATATTTTTCTAAAACAATTAGTTTATGCTTGCTTCGTTAATTCTGATTCTCTGgg                                                                                                                                                                                                                                                                                                                        ]




>consensus_6563#0
AATAAGAAACGTAAACATGTTGAAATACTTTATGCTGAGAATTCGATTTTGTACCAAATA
ATATAATATTGAATAAAGCTAATAATAATAATAATACATACATTAGCCTATCGTTAGCAC
AAGTTACCACAACGTGCAGTGTTCATTTTATATGTATATTTTTCTAAAACAATTAGTTTA
TGCTTGCTTCGTTAATTCTGATTCTCTGTGTGAATATATAGGAAAGCACCGTGATAACTA
ATCAATACTCTGCTACATGGCATTCCAAAGGTACGCCTCTAACTGGTGATGGTCAAGGAT
TACCTGGTGTATTTTTCAATTATGAAATAGCCCCTTTACTTGTTAAAATTACCGAAGAGA
AAAAGTAAGCACTCTAATAAAATTACGTCGAAAATATTGTAGTGTATATAAAAGATATTC
ACATGATAAATCTGTATCCTTTACTATGATTTAGTTCATACTTGATGAGATGAGTAAAAT
CAATGCTGATTGATAGATGATGTGCAATGATACAATGTGTCT

consensusID : consensus_6563#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 334
fasta sequence

                              [AAAAGATAGGCAATGAAGGATGCAGAATTCATGCGAATTTAACAGTCAATCGAGCTGGTGGAGCGTTTCATATTGCTCCTGGGCATAGATACACTGAAAACCATGCACACTTTCATAGCTTTCAAAGTCTCGGTCCCGCTCAGTTCAATGTGTCTCATTCAATCGATGAGCTTCGTTTCGATGAATCATATCCTGGCCAAGTTAATCCACTAGATGGAACAAAACTGGCTGTACAAACACACTCCCAGATGGTTATTTACTACTTACAACTGGCACCGACTATGTATATCAGCCTTCGTCGAAATGAAAGCACCGTGATAACTAATCGATACTC]

[+] EMBL CD142398             [AAAAGATAGGCAATGAAGGATGCAGAATTCATGCGAATTTAACAGTCAATCGAGCTGGTGGAGCGTTTCATATTGCTCCTGGGCATAGATACACTGAAAACCATGCACACTTTCATAGCTTTCAAAGTCTCGGTCCCGCTCAGTTCAATGTGTCTCATTCAATCGATGAGCTTCGTTTCGATGAATCATATCCTGGCCAAGTTAATCCACTAGATGGAACAAAACTGGCTGTACAAACACACTCCCAGATGGTTATTTACTACTTACAACTGGCACCGACTATGTATATCAGCCTTCGTCGAAATGAAAGCACCGTGATAACTAATCGATACTC]




>consensus_6563#1
AAAAGATAGGCAATGAAGGATGCAGAATTCATGCGAATTTAACAGTCAATCGAGCTGGTG
GAGCGTTTCATATTGCTCCTGGGCATAGATACACTGAAAACCATGCACACTTTCATAGCT
TTCAAAGTCTCGGTCCCGCTCAGTTCAATGTGTCTCATTCAATCGATGAGCTTCGTTTCG
ATGAATCATATCCTGGCCAAGTTAATCCACTAGATGGAACAAAACTGGCTGTACAAACAC
ACTCCCAGATGGTTATTTACTACTTACAACTGGCACCGACTATGTATATCAGCCTTCGTC
GAAATGAAAGCACCGTGATAACTAATCGATACTC

consensusID : consensus_6563#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 237
fasta sequence

                              [CAATCGGGGAGCTTCGTTTCGGTGAATCATATCCTGGTCAAGGTTAATCCACTANATGGAACAAAACTGGCTGTACAAACNCACTCCCAGATGGTTATTTACTACTTAAAACTGGTACCGACTATGTATATCAGCCTTCNTCTANNTGAAAGCACCGTGATAACTAATCAATACTCTGCTACATGGCATTCCAAAGGTACGCCTCTANCTGGTGATGGTCAAGGGATTACCTGGTGT]

[+] EMBL AA559813             [CAATCGGGGAGCTTCGTTTCGGTGAATCATATCCTGGTCAAGGTTAATCCACTANATGGAACAAAACTGGCTGTACAAACNCACTCCCAGATGGTTATTTACTACTTAAAACTGGTACCGACTATGTATATCAGCCTTCNTCTANNTGAAAGCACCGTGATAACTAATCAATACTCTGCTACATGGCATTCCAAAGGTACGCCTCTANCTGGTGATGGTCAAGGGATTACCTGGTGT]




>consensus_6563#2
CAATCGGGGAGCTTCGTTTCGGTGAATCATATCCTGGTCAAGGTTAATCCACTANATGGA
ACAAAACTGGCTGTACAAACNCACTCCCAGATGGTTATTTACTACTTAAAACTGGTACCG
ACTATGTATATCAGCCTTCNTCTANNTGAAAGCACCGTGATAACTAATCAATACTCTGCT
ACATGGCATTCCAAAGGTACGCCTCTANCTGGTGATGGTCAAGGGATTACCTGGTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6563#1      -AAAAGATAGGCAATGAAGGATGCAGAATTCATGC---GAATTTAACAGTCAATCGAGCT 56
consensus_6563#2      ------------------------------------------------------------
consensus_6563#0      AATAAGAAACGTAAACATGTTGAAATACTTTATGCTGAGAATTCGATTTTGTACCAAA-T 59
                                                                                  

consensus_6563#1      GGTGGAGCGTTTCATATTGCTCCTGGGCATAGATACACTGAAAACCATGCA-CACTTTCA 115
consensus_6563#2      ------------------------------------------------------------
consensus_6563#0      AATATAATATTGAATAAAGCTAATAATAATAATAATACATACATTAGCCTATCGTTAGCA 119
                                                                                  

consensus_6563#1      TAGCTTTCAAAGTCTCGGTCCCGCTCAGTTCA-ATGTGTCTCATTC--AATCGATGAGCT 172
consensus_6563#2      ---------------------------------------------C--AATCGGGGAGCT 13
consensus_6563#0      CAAGTTACCACAACGTG-CAGTGTTCATTTTATATGTATATTTTTCTAAAACAATTAGTT 178
                                                                   *  ** *    ** *

consensus_6563#1      T-----CGTTTCGATGAATCATATCCTGGCCAAG-TTAATCCACTAGATGGAACAAAACT 226
consensus_6563#2      T-----CGTTTCGGTGAATCATATCCTGGTCAAGGTTAATCCACTANATGGAACAAAACT 68
consensus_6563#0      TATGCTTGCTTCGTTAATTCTGATTCT--CTGTG-TGAATATATAGGAAAGCACCGTGAT 235
                      *      * **** * * **  ** **      * * ***  *    *  * **     *

consensus_6563#1      GGCTGTACAAACACACTCCCAGATGGTTATTTAC-----TACTTACAACTGGCACCGACT 281
consensus_6563#2      GGCTGTACAAACNCACTCCCAGATGGTTATTTAC-----TACTTAAAACTGGTACCGACT 123
consensus_6563#0      AACTA-ATCAATACTCTGCTACATGGCATTCCAAAGGTACGCCTCTAACTGGTGATGGTC 294
                        **  *  **  * ** * * ****   *  *        * *  ******    *   

consensus_6563#1      ATGTATATCA----GCCTTCGTCGAAATGAAAGCACCGTGATAACTAATCGATACTC--- 334
consensus_6563#2      ATGTATATCA----GCCTTCNTCTANNTGAAAGCACCGTGATAACTAATCAATACTCTGC 179
consensus_6563#0      AAGGATTACCTGGTGTATTTTTCAATTATGAAATAGCCCCTTTACTTGTTAAAATTACCG 354
                      * * **  *     *  **  ** *     **  * *    * ***  *  * * *    

consensus_6563#1      ------------------------------------------------------------
consensus_6563#2      TACATGGCATTCCAAAGGTACGCCTCTANCTGGTGATGGTCAAGGGATTACCTGGTGT-- 237
consensus_6563#0      AAGAGAAAAAGTAAGCACTCTAATAAAATTACGTCGAAAATATTGTAGTGTATATAAAAG 414
                                                                                  

consensus_6563#1      ------------------------------------------------------------
consensus_6563#2      ------------------------------------------------------------
consensus_6563#0      ATATTCACATGATAAATCTGTATCCTTTACTATGATTTAGTTCATACTTGATGAGATGAG 474
                                                                                  

consensus_6563#1      ------------------------------------------------
consensus_6563#2      ------------------------------------------------
consensus_6563#0      TAAAATCAATGCTGATTGATAGATGATGTGCAATGATACAATGTGTCT 522