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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6566#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 568 fasta sequence
[AGGCTTTCAAAGGACCCAGTTCCCTATGTAACTGCAGAGCCACTCCCAACTAACTTGTTTGAGTGGCATTATGTTATCAAAGGACCTGCTGATTCACCTTATAAAGGAGGTTATTATCATGGGAAACTTGTTTTTCCAAG-AGATTTTCCATTTCGACCTC-CTTCAATATACATGATAACACCAAACGGTAGATTCGCATGTAATACGAGACTTTGTCTATCAATAAGTGATTTCCATCCCGACACATGGAATCCTGCATGGTCTGTTTCATCTATACTTACGGGCTTATTGAGTTTTATGTT-GGAAAATACGTGTACCATGGGTAGTGTTGTGACTTCAACAAGCACTAAAAAGCAACTAGCTAGAAGCAGTGGCGATTTTAACCTGAAGTCTGAGATTTTCTGTGAATTATTCCCTGGAATCGTTAAAGAGATTCGCGAAAATCTGACAGCCGAAGAACTTCGTAATAAACTTTTGAATTCATCAACTCCACGTCAGTCACAATCTGATGCAAGTACAAATAACTCCGGAGTAAATGGTGAAAACAGAAATGAGTGGCGTATCTCCA]
[+] EMBL CD067402 [AGGCTTTCAAAGGACCCAGTTCCCTATGTAACTGCAGAGCCACTCCCAACTAACTTGTTTGAGTGGCATTATGTTATCAAAGGACCTGCTGATTCACCTTATAAAGGAGGTTATTATCATGGGAAACTTGTTTTTCCAAG AGATTTTCCATTTCGACCTC CTTCAATATACATGATAACACCAAACGGTAGATTCGCATGTAATACGAGACTTTGTCTATCAATAAGTGATTTCCATCCCGACACATGGAATCCTGCATGGTCTGTTTCATCTATACTTACGGGCTTATTGAGTTTTATGTTGGGAAAATACGTGTACCATGGGTA ]
[+] EMBL CD083696 [ gCCAGTTCCCTATGTAACTGCAGAGCCACTCCCAACTAACTTGTTTGAGTGGCATTATGTTATCAAAGGACCTGCTGATTCACCTTATAAAGGAGGTTATTATCATGGGAAACTTGTTTTTCCAAGAAGATTTTCCATTTCGACCTCNCTTCAATATACATGATAACACCAAACGGTAGATTCGCATGTAATACGAGACTTTGTCTATCAATAAGTGATTTCCATCCCGACACATGGAATCCTGCATGGTCTGTTTCATCTATACTTACGGGCTTATTGAGTTTTATGTT GGAAAATACGTGTACCATGGGTAGTGTTGTGACTTCAACAAGCACTAAAAAGCAACTAGCTAGAAGCAGTGGCGATTTTAACCTGAAGTCTGAGATTTTCTGTGAATTATTCCCTGGAATCGTTAAAGAGATTCGCGAAAATCTGACAGCCGAAGAACTTCGTAATAAACTTTTGAATTCATCAACTCCACGTCAGTCACAATCTGATGCAAGTACAAATAACTCCGGAGTAAATGGTGAAAACAGAA ]
[-] EMBL CD067294 [ TGCATGGTCTGTTTCATCTATACTTACGGGCTTATTGAGTTTTATGTT GGAAAATACGTGTACCATGGGTAGTGTTGTGACTTCAACAAGCACTAAAAAGCAACTAGCTAGAAGCAGTGGCGATTTTAACCTGAAGTCTGAGATTTTCTGTGAATTATTCCCTGGAATCGTTAAAGAGATTCGCGAAAATCTGACAGCCGAAGAACTTCGTAATAAACTTTTGAATTCATCAACTCCACGTCAGTCACAATCTGATGCAAGTACAAATAACTCCGGAGTAAATGGTGAAAACAGAAATGAGTGGCGTATCTCCA]
consensusID : consensus_6566#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 502 fasta sequence
[GACCGGCAGTTAGGTATACGAGACTTTGTCTATCAATAAGTGATTTCCATCCCGACACATGGAATCCTGCATGGTCTGTTTCATCTATACTTACGGGCTTATTGAGTTTTATGTTGGAAAATACGTTTACCATGGGTAGTGTTGTGACTTCAACAAGCACTAAAAAGCAACTAGCTAGAAGCAGTGGCGATTTTAACCTGAAGTCTGAGATTTTCTGTGAATTATTCCCTGGAATCGTTAAAGAGATTCGCGAAAATCTGACAGCCGAAGAACTTCGTAATAAACTTTTGAATTCATCAACTCCACGTCAGTCACAATCTGATGCAAGTACAAATAACTCCGGAGTAAATGGTGAAAACAGAAATGAGTGGCGTATCTCCAAATTATTTGTCCTGATCGTGTTTAGTATATTTGCTTTTCTTGTACAACTTGTCATGAGATTTCTAGAACCTATTTGATAAGCTATCCATATTTAAACGGTTATATATACTCTGCTACAGTT]
[+] EMBL CD084425 [GACCGGCAGTTAGGTATACGAGACTTTGTCTATCAATAAGTGATTTCCATCCCGACACATGGAATCCTGCATGGTCTGTTTCATCTATACTTACGGGCTTATTGAGTTTTATGTTGGAAAATACGTTTACCATGGGTAGTGTTGTGACTTCAACAAGCACTAAAAAGCAACTAGCTAGAAGCAGTGGCGATTTTAACCTGAAGTCTGAGATTTTCTGTGAATTATTCCCTGGAATCGTTAAAGAGATTCGCGAAAATCTGACAGCCGAAGAACTTCGTAATAAACTTTTGAATTCATCAACTCCACGTCAGTCACAATCTGATGCAAGTACAAATAACTCCGGAGTAAATGGTGAAAACAGAAATGAGTGGCGTATCTCCAAATTATTTGTCCTGATCGTGTTTAGTATATTTGCTTTTCTTGTACAACTTGTCATGAGATTTCTAGAACCTATTTGATAAGCTATCCATATTTAAACGGTTATATATACTCTGCTACAGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6566#0 AGGCTTTCAAAGGACCCAGTTCCCTATGTAACTGCAGAGCCACTCCCAACTAACTTGTTT 60
consensus_6566#1 ------------------------------------------------------------
consensus_6566#0 GAGTGGCATTATGTTATCAAAGGACCTGCTGATTCACCTTATAAAGGAGGTTATTATCAT 120
consensus_6566#1 ------------------------------------------------------------
consensus_6566#0 GGGAAACTTGTTTTTCCAAGAGATTTTCCATTTCGACCTCCTTCAATATACATGATAACA 180
consensus_6566#1 ------------------------------------------------------------
consensus_6566#0 CCAAACGGTAGATTCGCATGTAATACGAGACTTTGTCTATCAATAAGTGATTTCCATCCC 240
consensus_6566#1 --GACCGGCAGTTAGGTAT-----ACGAGACTTTGTCTATCAATAAGTGATTTCCATCCC 53
* *** ** * * ** ************************************
consensus_6566#0 GACACATGGAATCCTGCATGGTCTGTTTCATCTATACTTACGGGCTTATTGAGTTTTATG 300
consensus_6566#1 GACACATGGAATCCTGCATGGTCTGTTTCATCTATACTTACGGGCTTATTGAGTTTTATG 113
************************************************************
consensus_6566#0 TTGGAAAATACGTGTACCATGGGTAGTGTTGTGACTTCAACAAGCACTAAAAAGCAACTA 360
consensus_6566#1 TTGGAAAATACGTTTACCATGGGTAGTGTTGTGACTTCAACAAGCACTAAAAAGCAACTA 173
************* **********************************************
consensus_6566#0 GCTAGAAGCAGTGGCGATTTTAACCTGAAGTCTGAGATTTTCTGTGAATTATTCCCTGGA 420
consensus_6566#1 GCTAGAAGCAGTGGCGATTTTAACCTGAAGTCTGAGATTTTCTGTGAATTATTCCCTGGA 233
************************************************************
consensus_6566#0 ATCGTTAAAGAGATTCGCGAAAATCTGACAGCCGAAGAACTTCGTAATAAACTTTTGAAT 480
consensus_6566#1 ATCGTTAAAGAGATTCGCGAAAATCTGACAGCCGAAGAACTTCGTAATAAACTTTTGAAT 293
************************************************************
consensus_6566#0 TCATCAACTCCACGTCAGTCACAATCTGATGCAAGTACAAATAACTCCGGAGTAAATGGT 540
consensus_6566#1 TCATCAACTCCACGTCAGTCACAATCTGATGCAAGTACAAATAACTCCGGAGTAAATGGT 353
************************************************************
consensus_6566#0 GAAAACAGAAATGAGTGGCGTATCTCCA-------------------------------- 568
consensus_6566#1 GAAAACAGAAATGAGTGGCGTATCTCCAAATTATTTGTCCTGATCGTGTTTAGTATATTT 413
****************************
consensus_6566#0 ------------------------------------------------------------
consensus_6566#1 GCTTTTCTTGTACAACTTGTCATGAGATTTCTAGAACCTATTTGATAAGCTATCCATATT 473
consensus_6566#0 -----------------------------
consensus_6566#1 TAAACGGTTATATATACTCTGCTACAGTT 502
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||