cluster # 6578

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Schistosoma mansoni
cluster # 6578 cluster # 6578 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6578#0 length = 434 sequences # 1

consensus_6578#1 length = 301 sequences # 3

consensusID : consensus_6578#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 434
fasta sequence

                              [CGACTTAATAATCTCCTCGACAACAGTTACTAACAAATAACTTTGCGAAAAAGCGTATATTCACTCATCCATTTAGTGGATATCAGCGTGAGATCTCAACCACTCTAAGTCCTCAGAATACATATGGATTCAACCCGCCATCGAATAACCATAACATATTCCTGTCGGGTCCTCAAAATCATTCTCTGTCTAATAAAACTGACACATTGGAAACTAACCGAACACACTATCTTATCCGCAATCTGCACAGTACAAGTTTACCAAACAATGAACAGACATATGATTCGGTAAGGCAGTCAGGTATAGAGAACAAAAACAATATTTTATTACATGAGTACCAGAATAATAGTAGCAATATTAATAAAAGTTCTCAAATTCAATATCAGACTACGTATGCTTCGGATTATGAGGGGATAGATTTATCTCTCATGGGA]

[+] EMBL CD202419             [CGACTTAATAATCTCCTCGACAACAGTTACTAACAAATAACTTTGCGAAAAAGCGTATATTCACTCATCCATTTAGTGGATATCAGCGTGAGATCTCAACCACTCTAAGTCCTCAGAATACATATGGATTCAACCCGCCATCGAATAACCATAACATATTCCTGTCGGGTCCTCAAAATCATTCTCTGTCTAATAAAACTGACACATTGGAAACTAACCGAACACACTATCTTATCCGCAATCTGCACAGTACAAGTTTACCAAACAATGAACAGACATATGATTCGGTAAGGCAGTCAGGTATAGAGAACAAAAACAATATTTTATTACATGAGTACCAGAATAATAGTAGCAATATTAATAAAAGTTCTCAAATTCAATATCAGACTACGTATGCTTCGGATTATGAGGGGATAGATTTATCTCTCATGGGA]




>consensus_6578#0
CGACTTAATAATCTCCTCGACAACAGTTACTAACAAATAACTTTGCGAAAAAGCGTATAT
TCACTCATCCATTTAGTGGATATCAGCGTGAGATCTCAACCACTCTAAGTCCTCAGAATA
CATATGGATTCAACCCGCCATCGAATAACCATAACATATTCCTGTCGGGTCCTCAAAATC
ATTCTCTGTCTAATAAAACTGACACATTGGAAACTAACCGAACACACTATCTTATCCGCA
ATCTGCACAGTACAAGTTTACCAAACAATGAACAGACATATGATTCGGTAAGGCAGTCAG
GTATAGAGAACAAAAACAATATTTTATTACATGAGTACCAGAATAATAGTAGCAATATTA
ATAAAAGTTCTCAAATTCAATATCAGACTACGTATGCTTCGGATTATGAGGGGATAGATT
TATCTCTCATGGGA

consensusID : consensus_6578#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 301
fasta sequence

                              [ACCTCAATTGATAAAACATATCCTACAACACGAATAAATTCCAGTAGAATAAATAAAGTACAAGGTTATGCTGATCTGTTAATTGGTCGACCTAAACTGCATGATGACTTTTTAATCCCTCGACAACAGTTACTAACAAATAACTTTTCGTTAAATCGTTTATTTACTCATCCATTTAATGGATATCAACATGAGAACTCAACCACACTAAGTCCTCAGAATACATATCGATTCAACCCGCCATCGAATAACCATAACATATTCCTGTCTGGTCCTCAAAATCATTCTCTGTCTAATAAAA]

[-] EMBL CD068154             [ACCTCAATTGATAAAACATATCCTACAACACGAATAAATTCCAGTAGAATAAATAAAGTACAAGGTTATGCTGATCTGTTAATTGGTCGACCTAAACTGCATGATGACTTTTTAATCCCTCGACAACAGTTACTAACAAATAACTTTTCGTTAAATCGTTTATTTACTCATCCATTTAATGGATATCAACATGAGAACTCAACCACACTAAGTCCTCAGAATACATAT                                                                         ]
[-] EMBL CD195605             [                                                       AAGTACAAGGTTATGCTGATCTGTTAATTGGTCGACCTAAACTGCATGATGACTTTTTAATCCCTCGACAACAGTTACTAACAAATAACTTTTCGTTAAATCGTTTATTTACTCATCCATTTAATGGATATCAACATGAGAACTCAACCACACTAAGTCCTCAGAATACATATCGATTCAACCCGCCATCGAATAACCATAACATATTCCTGTCTGGTCCTCAAAATCATTCTCTGTCTAATAAAA]
[-] EMBL CD195798             [                                                                                                                                                                                                             CACTAAGTCCTCAGAATACATATCGATTCAACCCGCCATCGAATAACCATAACATATTCCTGTCTGGTCCTCAAAATCATTCTCTGTCTAATAAA ]




>consensus_6578#1
ACCTCAATTGATAAAACATATCCTACAACACGAATAAATTCCAGTAGAATAAATAAAGTA
CAAGGTTATGCTGATCTGTTAATTGGTCGACCTAAACTGCATGATGACTTTTTAATCCCT
CGACAACAGTTACTAACAAATAACTTTTCGTTAAATCGTTTATTTACTCATCCATTTAAT
GGATATCAACATGAGAACTCAACCACACTAAGTCCTCAGAATACATATCGATTCAACCCG
CCATCGAATAACCATAACATATTCCTGTCTGGTCCTCAAAATCATTCTCTGTCTAATAAA
A

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6578#0      ------------------------------------------------------------
consensus_6578#1      ACCTCAATTGATAAAACATATCCTACAACACGAATAAATTCCAGTAGAATAAATAAAGTA 60
                                                                                  

consensus_6578#0      --------------------------------------------CGACTTAATAATCTCC 16
consensus_6578#1      CAAGGTTATGCTGATCTGTTAATTGGTCGACCTAAACTGCATGATGACTTTTTAATC-CC 119
                                                                   *****  ***** **

consensus_6578#0      TCGACAACAGTTACTAACAAATAACTTTGCGAAAAAGCGTATATTCACTCATCCATTTAG 76
consensus_6578#1      TCGACAACAGTTACTAACAAATAACTTTTCGTTAAATCGTTTATTTACTCATCCATTTAA 179
                      **************************** **  *** *** **** ************* 

consensus_6578#0      TGGATATCAGCGTGAGATCTCAACCACTCTAAGTCCTCAGAATACATATGGATTCAACCC 136
consensus_6578#1      TGGATATCAACATGAGAACTCAACCACACTAAGTCCTCAGAATACATATCGATTCAACCC 239
                      ********* * ***** ********* ********************* **********

consensus_6578#0      GCCATCGAATAACCATAACATATTCCTGTCGGGTCCTCAAAATCATTCTCTGTCTAATAA 196
consensus_6578#1      GCCATCGAATAACCATAACATATTCCTGTCTGGTCCTCAAAATCATTCTCTGTCTAATAA 299
                      ****************************** *****************************

consensus_6578#0      AACTGACACATTGGAAACTAACCGAACACACTATCTTATCCGCAATCTGCACAGTACAAG 256
consensus_6578#1      AA---------------------------------------------------------- 301
                      **                                                          

consensus_6578#0      TTTACCAAACAATGAACAGACATATGATTCGGTAAGGCAGTCAGGTATAGAGAACAAAAA 316
consensus_6578#1      ------------------------------------------------------------
                                                                                  

consensus_6578#0      CAATATTTTATTACATGAGTACCAGAATAATAGTAGCAATATTAATAAAAGTTCTCAAAT 376
consensus_6578#1      ------------------------------------------------------------
                                                                                  

consensus_6578#0      TCAATATCAGACTACGTATGCTTCGGATTATGAGGGGATAGATTTATCTCTCATGGGA 434
consensus_6578#1      ----------------------------------------------------------