cluster # 6586

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Schistosoma mansoni
cluster # 6586 cluster # 6586 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6586#0 length = 384 sequences # 3

consensus_6586#1 length = 331 sequences # 1

consensusID : consensus_6586#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 384
fasta sequence

                              [ATATCAATATATCATCCTATGGCTTGAATGTATAACCCTTACCTCAGTTCTATCTATTGAAGAAGTAGCTCAACAAAAGTTTTGTTCAAACCTTAATGAGTCTTGCAGTCGGATTCTCTTTCGCCGCTGTTGTGATAATTTAGTTTGTCAAGGGTTC-TCAATGGAATATGTGTTCAATGTCTTGGTAAAAATAGATTATGTTTTCGGAGCTCGGAC-TGTTGCAGCGGAAGATGTTGGTTTTTTCACTGTAAAGAACAATATAGTAATATTACCACAAGTATTGAGAATAATACAGAAACCCACCAAAATATGACCAATGAAACGTTANCAGAAACTCTGTAAAACTATNTGCAACTAAAATTGTTTANTAGAACAAATACAAGA]

[+] EMBL AA958312             [ATATCAATATATCATCCTATGGCTTGAATGTATAACCCTTACCTCAGTTCTATCTATTGAAGAAGTAGCTCAACAAAAGTTTTGTTCAAACCTTAATGAGTCTTGCAGTCGGATTCTCTTTCGCCGCTGTTGTGATAATTTAGTTTGTCAAGGGTTC TCAATGGAATATGTGTTCAATGTCTTGGT AAAATAGATTATGTTTTCGGAGCTCGGAC TGTTGCAGCGGAAGATGTTGGTTTTTT                                                                                                                                             ]
[+] EMBL SM964                [                        ngtnTGTATAACCCNNACCTCAGTTCTATCTAATGAAGAAGTAGNTCAACAAAAGTTTTGTTCAAACCTTAATGAGTCTTGNAGTCGGATTCTCTTTCGCCGCTGTTGTGATAATTTAGTTTGTCAAGGGTTCTTCAATGGAATATGTGTTCAATGTCTTGGTAAAAATAGATTATGTNTTCGGAGCTCGGAC TGTTGCAGCGGAAGATGTTGGTTTTTTCACTGTAAAGAACAATATAGTAATATTACCACAAGTATTGAGAATAATACAGAAACCCACCAAAATATGACCAATGAAACGTTANCAGAAACTCTGTAAAACTATNTGCAACTAAAATTGTTTANTAGAACAAATACAAGA]
[+] EMBL CD068418             [                                                                                                                                                                    GAAT TGTGTTCAATGTCTTGGTAAAAATAGATTATGTTTTCGGAGCTCGGACGTGTTGCAGCGGAAGATGTTGGTTTTTTCACTGTAAAGAACAATATAGTAATATTACCACAAGTATTGAGAATAATACAGAAACCCAta                                                                                ]




>consensus_6586#0
ATATCAATATATCATCCTATGGCTTGAATGTATAACCCTTACCTCAGTTCTATCTATTGA
AGAAGTAGCTCAACAAAAGTTTTGTTCAAACCTTAATGAGTCTTGCAGTCGGATTCTCTT
TCGCCGCTGTTGTGATAATTTAGTTTGTCAAGGGTTCTCAATGGAATATGTGTTCAATGT
CTTGGTAAAAATAGATTATGTTTTCGGAGCTCGGACTGTTGCAGCGGAAGATGTTGGTTT
TTTCACTGTAAAGAACAATATAGTAATATTACCACAAGTATTGAGAATAATACAGAAACC
CACCAAAATATGACCAATGAAACGTTANCAGAAACTCTGTAAAACTATNTGCAACTAAAA
TTGTTTANTAGAACAAATACAAGA

consensusID : consensus_6586#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 331
fasta sequence

                              [AGGATNCGGAACGAGAATGATTGGNTATNTTCAATATATCATCCTATGGNTNGTNTGTNTAACCCTTACCTCAGTTCTATCTAATGAAGAAGTAGCTCAACAANAGTTTGGTCCAANCCTTAATGAGTCTTGCAGTTCGGATNCTCTTTCGCCGCTGTTGTGATAATTTAGTTGGNCAAGGGTCCTCCAATGGAATATGTGTCCAATGTCTTGGCCAAAAATAGATTATGTTTNCGGAGGCTCGGCACTGTCGCAGNGGGAAGGATGTTTGGTTTNTTCACTGTAAAGANACAATNTAGGNTNTTTTACCACAAGTTATTGGAGANNTANT]

[+] EMBL SM4201               [AGGATNCGGAACGAGAATGATTGGNTATNTTCAATATATCATCCTATGGNTNGTNTGTNTAACCCTTACCTCAGTTCTATCTAATGAAGAAGTAGCTCAACAANAGTTTGGTCCAANCCTTAATGAGTCTTGCAGTTCGGATNCTCTTTCGCCGCTGTTGTGATAATTTAGTTGGNCAAGGGTCCTCCAATGGAATATGTGTCCAATGTCTTGGCCAAAAATAGATTATGTTTNCGGAGGCTCGGCACTGTCGCAGNGGGAAGGATGTTTGGTTTNTTCACTGTAAAGANACAATNTAGGNTNTTTTACCACAAGTTATTGGAGANNTANT]




>consensus_6586#1
AGGATNCGGAACGAGAATGATTGGNTATNTTCAATATATCATCCTATGGNTNGTNTGTNT
AACCCTTACCTCAGTTCTATCTAATGAAGAAGTAGCTCAACAANAGTTTGGTCCAANCCT
TAATGAGTCTTGCAGTTCGGATNCTCTTTCGCCGCTGTTGTGATAATTTAGTTGGNCAAG
GGTCCTCCAATGGAATATGTGTCCAATGTCTTGGCCAAAAATAGATTATGTTTNCGGAGG
CTCGGCACTGTCGCAGNGGGAAGGATGTTTGGTTTNTTCACTGTAAAGANACAATNTAGG
NTNTTTTACCACAAGTTATTGGAGANNTANT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6586#0      --------------------------ATAT-CAATATATCATCCTATGGCTTGAATGTAT 33
consensus_6586#1      AGGATNCGGAACGAGAATGATTGGNTATNTTCAATATATCATCCTATGGNTNGTNTGTNT 60
                                                ** * ****************** * *  *** *

consensus_6586#0      AACCCTTACCTCAGTTCTATCTATTGAAGAAGTAGCTCAACAAAAGTTTTGTTCAAACCT 93
consensus_6586#1      AACCCTTACCTCAGTTCTATCTAATGAAGAAGTAGCTCAACAANAGTTTGGTCCAANCCT 120
                      *********************** ******************* ***** ** *** ***

consensus_6586#0      TAATGAGTCTTGCAGT-CGGATTCTCTTTCGCCGCTGTTGTGATAATTTAGTTTGTCAAG 152
consensus_6586#1      TAATGAGTCTTGCAGTTCGGATNCTCTTTCGCCGCTGTTGTGATAATTTAGTTGGNCAAG 180
                      **************** ***** ****************************** * ****

consensus_6586#0      GGTTCTC-AATGGAATATGTGTTCAATGTCTTGGT-AAAAATAGATTATGTTTTCGGAG- 209
consensus_6586#1      GGTCCTCCAATGGAATATGTGTCCAATGTCTTGGCCAAAAATAGATTATGTTTNCGGAGG 240
                      *** *** ************** ***********  ***************** ***** 

consensus_6586#0      CTCGG-ACTGTTGCAGCGGAA--GATGTT-GGTTTTTTCACTGTAAAGAA-CAATATAGT 264
consensus_6586#1      CTCGGCACTGTCGCAGNGGGAAGGATGTTTGGTTTNTTCACTGTAAAGANACAATNTAGG 300
                      ***** ***** **** ** *  ****** ***** *************  **** *** 

consensus_6586#0      A-ATATTACCACAAGTATTGAGAATAATACAGAAACCCACCAAAATATGACCAATGAAAC 323
consensus_6586#1      NTNTTTTACCACAAGTTATTGGAGANNTANT----------------------------- 331
                         * ***********  *  **    **                               

consensus_6586#0      GTTANCAGAAACTCTGTAAAACTATNTGCAACTAAAATTGTTTANTAGAACAAATACAAG 383
consensus_6586#1      ------------------------------------------------------------
                                                                                  

consensus_6586#0      A 384
consensus_6586#1      -