cluster # 6592

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Schistosoma mansoni
cluster # 6592 cluster # 6592 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6592#0 length = 755 sequences # 1

consensus_6592#1 length = 575 sequences # 2
consensus_6592#2 length = 302 sequences # 1

consensusID : consensus_6592#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 755
fasta sequence

                              [GTAGTACCATTGCAACTACGAGATCTCTGTCCCAAACCTTCCACCTACCAAAGTTCACGAAGTCAGTTCGTCTCACCAGTCTTCCCCTAATGGAGCATATATCAATAAACGGTCAGAATATTTAGACCAGGTTCGTTTTAGGTGCTTTAAAAAGTCTTAAGATATGATAACCCAAGACTTTTGTTATCAACGAAGGGTCTAGTTGCTGTATAGTGCTGAAAGATACTTCTTACCTTCTGGTCTCATTTGGTGACAAGTAGTAAGACCAAATCTTTTTTCAATAACAATAAAATTTCACTACATTCTGAAGGCCCCCAAAAGACAAAAAAACAGTTTGCTTCAGTACATAGTAAAGTTGCCCTACATATTGGTCACTATCCGTCCACAAACTACGTTGGCTTCGATTCGCTGGTAACTGATCATTTATCTCCATTTGTCAAACTCGTGGTTGGTACCACAAGGTATGTGGGGCAACTGAAAACGGATATGTTGCTCAACATTGTNGTACGTTTTTCGGGACGGATGTCCCGACAAGTCGTTGAAACTAAGCATGAAAAACCCGTACTCGATCAAAGTTGTATTTCATAGCATATGTTTGTGGGTAAAACCATTAAAGTCCTGTGGTGGTGTATGCTACTTATGTCGAAAAACTTAGCACGTTACACCAATCAGAAATGGAATGCATGACCAGAAGGCTATGAGATCGAGTTGNAGGATAACCGAGAGAAATTTAATGAATTGCCAATTGGAAAATC]

[+] EMBL CD088909             [GTAGTACCATTGCAACTACGAGATCTCTGTCCCAAACCTTCCACCTACCAAAGTTCACGAAGTCAGTTCGTCTCACCAGTCTTCCCCTAATGGAGCATATATCAATAAACGGTCAGAATATTTAGACCAGGTTCGTTTTAGGTGCTTTAAAAAGTCTTAAGATATGATAACCCAAGACTTTTGTTATCAACGAAGGGTCTAGTTGCTGTATAGTGCTGAAAGATACTTCTTACCTTCTGGTCTCATTTGGTGACAAGTAGTAAGACCAAATCTTTTTTCAATAACAATAAAATTTCACTACATTCTGAAGGCCCCCAAAAGACAAAAAAACAGTTTGCTTCAGTACATAGTAAAGTTGCCCTACATATTGGTCACTATCCGTCCACAAACTACGTTGGCTTCGATTCGCTGGTAACTGATCATTTATCTCCATTTGTCAAACTCGTGGTTGGTACCACAAGGTATGTGGGGCAACTGAAAACGGATATGTTGCTCAACATTGTNGTACGTTTTTCGGGACGGATGTCCCGACAAGTCGTTGAAACTAAGCATGAAAAACCCGTACTCGATCAAAGTTGTATTTCATAGCATATGTTTGTGGGTAAAACCATTAAAGTCCTGTGGTGGTGTATGCTACTTATGTCGAAAAACTTAGCACGTTACACCAATCAGAAATGGAATGCATGACCAGAAGGCTATGAGATCGAGTTGNAGGATAACCGAGAGAAATTTAATGAATTGCCAATTGGAAAATC]




>consensus_6592#0
GTAGTACCATTGCAACTACGAGATCTCTGTCCCAAACCTTCCACCTACCAAAGTTCACGA
AGTCAGTTCGTCTCACCAGTCTTCCCCTAATGGAGCATATATCAATAAACGGTCAGAATA
TTTAGACCAGGTTCGTTTTAGGTGCTTTAAAAAGTCTTAAGATATGATAACCCAAGACTT
TTGTTATCAACGAAGGGTCTAGTTGCTGTATAGTGCTGAAAGATACTTCTTACCTTCTGG
TCTCATTTGGTGACAAGTAGTAAGACCAAATCTTTTTTCAATAACAATAAAATTTCACTA
CATTCTGAAGGCCCCCAAAAGACAAAAAAACAGTTTGCTTCAGTACATAGTAAAGTTGCC
CTACATATTGGTCACTATCCGTCCACAAACTACGTTGGCTTCGATTCGCTGGTAACTGAT
CATTTATCTCCATTTGTCAAACTCGTGGTTGGTACCACAAGGTATGTGGGGCAACTGAAA
ACGGATATGTTGCTCAACATTGTNGTACGTTTTTCGGGACGGATGTCCCGACAAGTCGTT
GAAACTAAGCATGAAAAACCCGTACTCGATCAAAGTTGTATTTCATAGCATATGTTTGTG
GGTAAAACCATTAAAGTCCTGTGGTGGTGTATGCTACTTATGTCGAAAAACTTAGCACGT
TACACCAATCAGAAATGGAATGCATGACCAGAAGGCTATGAGATCGAGTTGNAGGATAAC
CGAGAGAAATTTAATGAATTGCCAATTGGAAAATC

consensusID : consensus_6592#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 575
fasta sequence

                              [CAGTACATAGTAAAGTTGCCCTACGTATTGGTCACTATCCGTCCACAAACTACGTTGGCTTCGATTCGCTGGTAACTGATCATTTATCTCCATTTGTCAAACTCGTGTTTGGTACCACAAG-GTATGTG-GGGCAACT-GAAAACGGATATGTTGCTCAACATTGTGTTACGTTTTTCGTGACGGATGTCCGACAAAGTCGTTGAAACTAAGCATGAAAAACCCGTACTCGATCAAAGTTGTATTTCATAGCATATGTTTGTGGGTAAACCAGTTAAGTCCTGTTGTGGTGTATGCTACTTATGTCGAAAAACATAGCACGTAACACCAATCAGAAAAAGAATGCATGACAGAAGGCCTAGGAGATCGAGTTGAAGAAAAACGAAGAGAAATATAAAGGAATTGCAAATTGGAAGAATCATACTGAACGGAAAGGATAATTGACGGAAGTTTTGCTAATGAAGTATTGAATGTACGGTTTCCATATTTTACAAGGATATTCTGTAATTTTGTATTAAACAATAAATTTTTCCCCAACTGAATGTTCGTTCATCACACTGGTCTCATTTATAAGGTTCT]

[-] EMBL CD114073             [CAGTACATAGTAAAGTTGCCCTACGTATTGGTCACTATCCGTCCACAAACTACGTTGGCTTCGATTCGCTGGTAACTGATCATTTATCTCCATTTGTCAAACTCGTGTTTGGTACCACAAG GTATGTG GGGCAACT GAAAACGGATATGTTGCTCAACATTGTGTTACGTTTTTCGTGACGGATGTCCGACAAAGTCGTTGAAACTAAGCATGAAAAACCCGTACTCGATCAAAGTTGTATTTCATAGCATATGTTTGTGGGTAAACCAGTTAAGTCCTGTTGTGGTGTATGCTACTTATGTCGAAAAACATAGCACGTAACACCAATCAGAAAAAGAATGCATGACAGAAGGCCTAGGAGATCGAGTTGAAGAAAAACGAAGAGAAATATAAAGGAATTGCAAATTGGAA                                                                                                                                                                    ]
[+] EMBL CD069568             [                             tGTCACTATCCGTCCACAAACTACGTTGGCTTCGATTCGCTGGTAACTGATCATTTATCTCCATTTGTCAAACTCGTGTTTGGTACCACAAGTGTATGTGTGGGCAACTGGAAAACGGATATGTTGCTCAACGTTGTGTTACGTTTTTCGGGACGGATGTCCGACAAAGTCGTTGAAACTAAGCATGAAAAACCCGTACTCGATCAAAGTTGTATTTCATAGCATATGTTTGTGGGTAAACCAGTTAAGTCCTGTTGTGGTGTATGCTACTTATGTCGAAAAACATAGCACGTAACACCAATCAGAATTGGAATGCATGACAGAAGGCCTAGGAGATCGAGTTGAAGAAAAACGAAGAGAAATATAAAGGAATTGCAAATTGGAAGAATCATACTGAACGGAAAGGATAATTGACGGAAGTTTTGCTAATGAAGTATTGAATGTACGGTTTCCATATTTTACAAGGATATTCTGTAATTTTGTATTAAACAATAAATTTTTCCCCAACTGAATGTTCGTTCATCACACTGGTCTCATTTATAAGGTTCT]




>consensus_6592#1
CAGTACATAGTAAAGTTGCCCTACGTATTGGTCACTATCCGTCCACAAACTACGTTGGCT
TCGATTCGCTGGTAACTGATCATTTATCTCCATTTGTCAAACTCGTGTTTGGTACCACAA
GGTATGTGGGGCAACTGAAAACGGATATGTTGCTCAACATTGTGTTACGTTTTTCGTGAC
GGATGTCCGACAAAGTCGTTGAAACTAAGCATGAAAAACCCGTACTCGATCAAAGTTGTA
TTTCATAGCATATGTTTGTGGGTAAACCAGTTAAGTCCTGTTGTGGTGTATGCTACTTAT
GTCGAAAAACATAGCACGTAACACCAATCAGAAAAAGAATGCATGACAGAAGGCCTAGGA
GATCGAGTTGAAGAAAAACGAAGAGAAATATAAAGGAATTGCAAATTGGAAGAATCATAC
TGAACGGAAAGGATAATTGACGGAAGTTTTGCTAATGAAGTATTGAATGTACGGTTTCCA
TATTTTACAAGGATATTCTGTAATTTTGTATTAAACAATAAATTTTTCCCCAACTGAATG
TTCGTTCATCACACTGGTCTCATTTATAAGGTTCT

consensusID : consensus_6592#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 302
fasta sequence

                              [ATTTAGACCAGGTGCGTTTTAGGTGTTTTAAAAAGTCTTAAGATATGATAACCCAAGACTTTTGTTATCAACGAAGGGTCTAGTTGCTGTATAGTGATGAAAGATACTTCTTACCTTCTGGTCTCATTTGGTGACAAGTAGTAAGACCTAATCTTTCTTCAATAACAATAAAATTTCACTACATTCTGAAGGCCCCCAAGAGACAAAAAAACAGTTTGCTTCAGTACATAGTAAAGTTGCCCTACGTATTGGTCACTATCCGTCCACAAATTACGTTGGATTCGATTCGTTGCTGCCAATGC]

[-] EMBL CD069011             [ATTTAGACCAGGTGCGTTTTAGGTGTTTTAAAAAGTCTTAAGATATGATAACCCAAGACTTTTGTTATCAACGAAGGGTCTAGTTGCTGTATAGTGATGAAAGATACTTCTTACCTTCTGGTCTCATTTGGTGACAAGTAGTAAGACCTAATCTTTCTTCAATAACAATAAAATTTCACTACATTCTGAAGGCCCCCAAGAGACAAAAAAACAGTTTGCTTCAGTACATAGTAAAGTTGCCCTACGTATTGGTCACTATCCGTCCACAAATTACGTTGGATTCGATTCGTTGCTGCCAATGC]




>consensus_6592#2
ATTTAGACCAGGTGCGTTTTAGGTGTTTTAAAAAGTCTTAAGATATGATAACCCAAGACT
TTTGTTATCAACGAAGGGTCTAGTTGCTGTATAGTGATGAAAGATACTTCTTACCTTCTG
GTCTCATTTGGTGACAAGTAGTAAGACCTAATCTTTCTTCAATAACAATAAAATTTCACT
ACATTCTGAAGGCCCCCAAGAGACAAAAAAACAGTTTGCTTCAGTACATAGTAAAGTTGC
CCTACGTATTGGTCACTATCCGTCCACAAATTACGTTGGATTCGATTCGTTGCTGCCAAT
GC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6592#0      ---------------------------------------GTAGTACCATTGCAACTACGA 21
consensus_6592#2      ------------------------------------------------------------
consensus_6592#1      CAGTACATAGTAAAGTTGCCCTACGTATTGGTCACTATCCGTCCACAAACTACGTTGGCT 60
                                                                                  

consensus_6592#0      GATCTCTGTCCCAAACCTTCCACCTACCAAAGTTCACGAAGTCAGTTCGTCTCACCAGTC 81
consensus_6592#2      ------------------------------------------------------------
consensus_6592#1      TCGATTCGCTGGTAACTGATCATTTATCTCCATTTGTCAAACTCGTGTTTGGTACCACAA 120
                                                                                  

consensus_6592#0      TTCCCCTAATGGAGCATATATCAATAAACGGTCAGAATATTTAG--ACCAGGTTCGTTTT 139
consensus_6592#2      --------------------------------------ATTTAG--ACCAGGTGCGTTTT 20
consensus_6592#1      GGTATGTGGGGCAACTGAAAACGGATATGTTGCTCAACATTGTGTTACGTTTTTCGTGAC 180
                                                            ***  *  **    * ***   

consensus_6592#0      AGGTGCTTTAAAAAGTCTTAAGATATGATAACCCAAGACTTTTGTT--ATCAACGAAGGG 197
consensus_6592#2      AGGTGTTTTAAAAAGTCTTAAGATATGATAACCCAAGACTTTTGTT--ATCAACGAAGGG 78
consensus_6592#1      GGATGTCCGACAAAGTCGTTGAAACTAAGCATGAAAAACCCGTACTCGATCAAAGTTGTA 240
                       * **    * ****** *   *  * *  *   ** **   *  *  ***** *  *  

consensus_6592#0      TCTAGTTGCTGTATAGTGCTGAAAGATACTTCTTACCTTCTGGTCTCATTTG-GTGAC-- 254
consensus_6592#2      TCTAGTTGCTGTATAGTGATGAAAGATACTTCTTACCTTCTGGTCTCATTTG-GTGAC-- 135
consensus_6592#1      TTTCATAGC-ATATGTTTGTGGGTAA-ACCAGTTAAGTCCTGTTGTGGTGTATGCTACTT 298
                      * *  * **  ***  *  **    * **   ***  * *** * *  * *  *  **  

consensus_6592#0      AAGTAGTAAGACCAAATCTTT--TTTCAATAACAATAAAATTTCACTACATTCTGAAGGC 312
consensus_6592#2      AAGTAGTAAGACCTAATCTTT--CTTCAATAACAATAAAATTTCACTACATTCTGAAGGC 193
consensus_6592#1      ATGTCGAAAAACATAGCACGTAACACCAATCAGAAAAAGAATGCATGACA----GAAGGC 354
                      * ** * ** **  *     *     **** * ** ** * * **  ***    ******

consensus_6592#0      CCCCAAAAGACAAA-AAAACAGTTTGCTTCAGTACATAGTAAAGTTGCCCTACATATTGG 371
consensus_6592#2      CCCCAAGAGACAAA-AAAACAGTTTGCTTCAGTACATAGTAAAGTTGCCCTACGTATTGG 252
consensus_6592#1      CTAGGAGATCGAGTTGAAGAAAAACGAAGAGAAATATAAAGGAATTGCAAATTGGAAGAA 414
                      *    * *   *    **  *    *       * ***    * ****       *    

consensus_6592#0      TCACTATCCGTCCACAAACTACGTTGGCTTCGATTCGCTGGTAACTGATCATTTATCTCC 431
consensus_6592#2      TCACTATCCGTCCACAAATTACGTTGGATTCGATTCGTTGCTGCCAATGC---------- 302
consensus_6592#1      TCAT--ACTGAACGGAAAGGATAATTGACGGAAGTT-TTGCTAATGAAGTATTGAATGTA 471
                      ***    * *  *  ***  *   * *     * *   ** *                  

consensus_6592#0      ATTTGTCAAACTCGTGGTTGGTACCACAAGGTATGTGGGGCAACTGAAAACGGATATGTT 491
consensus_6592#2      ------------------------------------------------------------
consensus_6592#1      CGGTTTCCATATTTTACAAGGATATTCTGTAATTTTGTATTAAACAATAAATTTTTCCCC 531
                                                                                  

consensus_6592#0      GCTCAACATTGTNGTACGTTTTTCGGGACGGATGTCCCGACAAGTCGTTGAAACTAAGCA 551
consensus_6592#2      ------------------------------------------------------------
consensus_6592#1      AACTGAATGTTCGTTCATCACACTGGTCTCATTTATAAGGTTCT---------------- 575
                                                                                  

consensus_6592#0      TGAAAAACCCGTACTCGATCAAAGTTGTATTTCATAGCATATGTTTGTGGGTAAAACCAT 611
consensus_6592#2      ------------------------------------------------------------
consensus_6592#1      ------------------------------------------------------------
                                                                                  

consensus_6592#0      TAAAGTCCTGTGGTGGTGTATGCTACTTATGTCGAAAAACTTAGCACGTTACACCAATCA 671
consensus_6592#2      ------------------------------------------------------------
consensus_6592#1      ------------------------------------------------------------
                                                                                  

consensus_6592#0      GAAATGGAATGCATGACCAGAAGGCTATGAGATCGAGTTGNAGGATAACCGAGAGAAATT 731
consensus_6592#2      ------------------------------------------------------------
consensus_6592#1      ------------------------------------------------------------
                                                                                  

consensus_6592#0      TAATGAATTGCCAATTGGAAAATC 755
consensus_6592#2      ------------------------
consensus_6592#1      ------------------------