cluster # 6594

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Schistosoma mansoni
cluster # 6594 cluster # 6594 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6594#0 length = 656 sequences # 2

consensus_6594#1 length = 551 sequences # 2

consensusID : consensus_6594#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 656
fasta sequence

                              [CAANATTCGGCACGAGGCTTGTGGACGTTTATTATGCAGTTTATGCAGTATATTTAGCTACAGTTGTTGTTGAACATACCTATATGTGTGGTGGTTTTTCTGGCGTAGTCCTTGAAGTGAACACTTCCATTGTTTACGTATCACTTGGATCAAATATTTGTGATTGGGGCTCAGTGTATTTAGATGAATATGGAGAAGAAGATTTAGAATTAAAACGTGGGAAACCATTATTCTTAAATGCTGAACGATTTGCTCTCTTAGAAAATCAATGGATCACTCATTCATTCCGTCATGTATTGAAAAATTGGCGGTCTGTTTGAAAAAAAATAATAAAAACAAGGAAAGGACATACCCACATGCAAACACAAATAAACCATATGTGAATATCAATGTCACAATTCACCGCCATTGCCCTAATGTACTATTATTGTACATGTCAAGATATGTCCTGTTAAAACAGCTGTCGGATATACATAAATATTACAGTAAATACTTGAATTTATTCTTCACTAATTTTCATCAAAATTCTTTTTTTTATTAAATACCAATCGACGATACATATATATGACTAGACTATAAAAGCAGAAATATACACACAGTCAGTCCTTCTTGAATCATGTTCTTAGCAAATTACGCTAGGAAACTNTCTACATACA]

[+] EMBL CD083178             [CAANATTCGGCACGAGGCTTGTGGACGTTTATTATGCAGTTTATGCAGTATATTTAGCTACAGTTGTTGTTGAACATACCTATATGTGTGGTGGTTTTTCTGGCGTAGTCCTTGAAGTGAACACTTCCATTGTTTACGTATCACTTGGATCAAATATTTGTGATTGGGGCTCAGTGTATTTAGATGAATATGGAGAAGAAGATTTAGAATTAAAACGTGGGAAACCATTATTCTTAAATGCTGAACGATTTGCTCTCTTAGAAAATCAATGGATCACTCATTCATTCCGTCATGTATTGAAAAATTGGCGGTCTGTTTGAAAAAAAATAATAAAAACAAGGAAAGGACATACCCACATGCAAACACAAATAAACCATATGTGAATATCAATGTCACAATTCACCGCCATTGCCCTAATGTACTATTATTGTACATGTCAAGATATGTCCTGTTAAAACAGCTGTCGGATATACATAAATATTACAGTAAATACTTGAATTTATTCTTCACTAATTTTCATCAAAATTCTTTTTTTTATTAAATACCAATCGACGATACATATATATGACTAGACTATAAAAGCAGAAATATACACACAGTCAGTCCTTCTTGAATCATGTTCTTAGCAAATTACGCTAGGAAACTNTCTACATACA]
[-] EMBL CD154657             [                                                                                                                                                                                                                                                                                                                                                                        AAACACAAATAAACCATATGTGAATATCAATGTCACAATTCACCGCCATTGCCCTAATGTACTATTATTGTACATGTCAAGATATGTCCTGTTAAAACAGCTGTCGGATATACATAAATATTACAGTAAATACTTGAATTTATTCTTCACTAATTTTCATCAAAATTCTTTTTTTTATTAAATACCAATCGACGATACATATATATGACTAGACTATAAAAGCGGAAATATACACACAGTCAGTCCT                                                 ]




>consensus_6594#0
CAANATTCGGCACGAGGCTTGTGGACGTTTATTATGCAGTTTATGCAGTATATTTAGCTA
CAGTTGTTGTTGAACATACCTATATGTGTGGTGGTTTTTCTGGCGTAGTCCTTGAAGTGA
ACACTTCCATTGTTTACGTATCACTTGGATCAAATATTTGTGATTGGGGCTCAGTGTATT
TAGATGAATATGGAGAAGAAGATTTAGAATTAAAACGTGGGAAACCATTATTCTTAAATG
CTGAACGATTTGCTCTCTTAGAAAATCAATGGATCACTCATTCATTCCGTCATGTATTGA
AAAATTGGCGGTCTGTTTGAAAAAAAATAATAAAAACAAGGAAAGGACATACCCACATGC
AAACACAAATAAACCATATGTGAATATCAATGTCACAATTCACCGCCATTGCCCTAATGT
ACTATTATTGTACATGTCAAGATATGTCCTGTTAAAACAGCTGTCGGATATACATAAATA
TTACAGTAAATACTTGAATTTATTCTTCACTAATTTTCATCAAAATTCTTTTTTTTATTA
AATACCAATCGACGATACATATATATGACTAGACTATAAAAGCAGAAATATACACACAGT
CAGTCCTTCTTGAATCATGTTCTTAGCAAATTACGCTAGGAAACTNTCTACATACA

consensusID : consensus_6594#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 551
fasta sequence

                              [TCGTCAATGGTGTTCACCACGTCTTATACGCACACCATCATCATTTGATGTATTATTCAATGCTGTACATTTAGTCAATTGTTCATCAAATCAACATAGATTTCAAGACAATATTCTATGTCTTATTTGTGGACGTTTATTATGCAGTTTATGCAGTAATTTAGCTACAGTTGTTGTTGAACATACCTATATGTGTGGTGCTTTTTCTGGCGTAGTCCTTGAAGTGAACACTTCCATTGTTTACGTATCACTTGGATCAAATATTTGTGATTGGGGCTCAGTGTATTTAGATGAATATGGAGAAGAAGATTTAGAATTAAAACGTGGGAAACCATTATTCTTAAATGCTGAACGATTTGCTCTCTTAGAAAATCAATGGATCACTCATTCATTCCGTCATGTATTGAAAAATTGGCGGTCTGTTTGAAAAAAAATAATAAAAACAAGGAAAGGACATACCCACATGCAAACACAAATAAACCATATGTGAATATCAATGTCACAATTCACCGCCAGCACCACCATACAAGGGCGATATCGCGCCGCTAATT]

[-] EMBL CD069243             [TCGTCAATGGTGTTCACCACGTCTTATACGCACACCATCATCATTTGATGTATTATTCAATGCTGTACATTTAGTCAATTGTTCATCAAATCAACATAGATTTCAAGACAATATTCTATGTCTTATTTGTGGACGTTTATTATGCAGTTTATGCAGTAATTTAGCTACAGTTGTTGTTGAACATACCTATATGTGTGGTGCTTTTTCTGGCGTAGTCCTTGAAGTGAACACTTCCATTGTTTACGTATCACTTGGATCAAATATTTGTGATTGGGGCTCAGTGTATTTAGATGAATATGGAGAAGAAGATTTAGAATTAAAACGTGGGAAACCATTATTCTTAAATGCTGAACGATTTGCTCTCTTAGAAAATCAATGGATCACTCATTCATTCCGTCATGTATTGAAAAATTGGCGGTCTGTTTGAAAAAAAATAATAAAAACAAGGAAAGGACATACCCACATGCAAACACAAATAAACCATATGTGAATATCAATGTCACAATTCACCGCCAGCACCACCATACAAGGGCGATATCGCGCCGCTAATT]
[-] EMBL CD069086             [                                                                                            AACATAGATTTCAAGACAATATTCTATGTCTTATTTGTGGACGTTTATTATGCAGTTTATGCAGTAATTTAGCTACAGTTGTTGTTGAACATACCTATATGTGTGCTGGTTTTTCTGGCGTAGTCCTTGAAGTGAACACTTCCATTGTTTACGTATCACTTGGATCAAATATTTGTGATTGGGGCTCAGTGTATTTAGATGAATATGGAGAAGAAGATTTAGAATTAAAACGTGGGAAACCATTATTCTTAAATGCTGAACGATTTGCTCTCTTAGAAAATCAATGGATCACTCATTCATTCCGTCATGTATTGAAAAATTGGCGGTCTGTTTGAAAAAAAATAATAAAAACAAGGAAAGGACATACCCACATGCAAACACAAATAAACCATATGTGAATATCAATGTCACAATTCACCGCCAGCA                                 ]




>consensus_6594#1
TCGTCAATGGTGTTCACCACGTCTTATACGCACACCATCATCATTTGATGTATTATTCAA
TGCTGTACATTTAGTCAATTGTTCATCAAATCAACATAGATTTCAAGACAATATTCTATG
TCTTATTTGTGGACGTTTATTATGCAGTTTATGCAGTAATTTAGCTACAGTTGTTGTTGA
ACATACCTATATGTGTGGTGCTTTTTCTGGCGTAGTCCTTGAAGTGAACACTTCCATTGT
TTACGTATCACTTGGATCAAATATTTGTGATTGGGGCTCAGTGTATTTAGATGAATATGG
AGAAGAAGATTTAGAATTAAAACGTGGGAAACCATTATTCTTAAATGCTGAACGATTTGC
TCTCTTAGAAAATCAATGGATCACTCATTCATTCCGTCATGTATTGAAAAATTGGCGGTC
TGTTTGAAAAAAAATAATAAAAACAAGGAAAGGACATACCCACATGCAAACACAAATAAA
CCATATGTGAATATCAATGTCACAATTCACCGCCAGCACCACCATACAAGGGCGATATCG
CGCCGCTAATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6594#0      ------------------------------------------------------------
consensus_6594#1      TCGTCAATGGTGTTCACCACGTCTTATACGCACACCATCATCATTTGATGTATTATTCAA 60
                                                                                  

consensus_6594#0      ------------------------------------------------CAANATTCGGCA 12
consensus_6594#1      TGCTGTACATTTAGTCAATTGTTCATCAAATCAACATAGATTTCAAGACAATATTCTATG 120
                                                                      *** ****    

consensus_6594#0      CGAGGCTTGTGGACGTTTATTATGCAGTTTATGCAGTATATTTAGCTACAGTTGTTGTTG 72
consensus_6594#1      TCTTATTTGTGGACGTTTATTATGCAGTTTATGCAGTA-ATTTAGCTACAGTTGTTGTTG 179
                            ******************************** *********************

consensus_6594#0      AACATACCTATATGTGTGGTGGTTTTTCTGGCGTAGTCCTTGAAGTGAACACTTCCATTG 132
consensus_6594#1      AACATACCTATATGTGTGGTGCTTTTTCTGGCGTAGTCCTTGAAGTGAACACTTCCATTG 239
                      ********************* **************************************

consensus_6594#0      TTTACGTATCACTTGGATCAAATATTTGTGATTGGGGCTCAGTGTATTTAGATGAATATG 192
consensus_6594#1      TTTACGTATCACTTGGATCAAATATTTGTGATTGGGGCTCAGTGTATTTAGATGAATATG 299
                      ************************************************************

consensus_6594#0      GAGAAGAAGATTTAGAATTAAAACGTGGGAAACCATTATTCTTAAATGCTGAACGATTTG 252
consensus_6594#1      GAGAAGAAGATTTAGAATTAAAACGTGGGAAACCATTATTCTTAAATGCTGAACGATTTG 359
                      ************************************************************

consensus_6594#0      CTCTCTTAGAAAATCAATGGATCACTCATTCATTCCGTCATGTATTGAAAAATTGGCGGT 312
consensus_6594#1      CTCTCTTAGAAAATCAATGGATCACTCATTCATTCCGTCATGTATTGAAAAATTGGCGGT 419
                      ************************************************************

consensus_6594#0      CTGTTTGAAAAAAAATAATAAAAACAAGGAAAGGACATACCCACATGCAAACACAAATAA 372
consensus_6594#1      CTGTTTGAAAAAAAATAATAAAAACAAGGAAAGGACATACCCACATGCAAACACAAATAA 479
                      ************************************************************

consensus_6594#0      ACCATATGTGAATATCAATGTCACAATTCACCGCCATTGCCCTAATGTACTATTATTGTA 432
consensus_6594#1      ACCATATGTGAATATCAATGTCACAATTCACCGCCAGCACCACCATACAAGGGCGATAT- 538
                      ************************************   **   **  *       * * 

consensus_6594#0      CATGTCAAGATATGTCCTGTTAAAACAGCTGTCGGATATACATAAATATTACAGTAAATA 492
consensus_6594#1      CGCGCCGCTAATT----------------------------------------------- 551
                      *  * *   *  *                                               

consensus_6594#0      CTTGAATTTATTCTTCACTAATTTTCATCAAAATTCTTTTTTTTATTAAATACCAATCGA 552
consensus_6594#1      ------------------------------------------------------------
                                                                                  

consensus_6594#0      CGATACATATATATGACTAGACTATAAAAGCAGAAATATACACACAGTCAGTCCTTCTTG 612
consensus_6594#1      ------------------------------------------------------------
                                                                                  

consensus_6594#0      AATCATGTTCTTAGCAAATTACGCTAGGAAACTNTCTACATACA 656
consensus_6594#1      --------------------------------------------