cluster # 6614

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Schistosoma mansoni
cluster # 6614 cluster # 6614 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6614#0 length = 690 sequences # 3

consensus_6614#1 length = 308 sequences # 1

consensusID : consensus_6614#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 690
fasta sequence

                              [CCAANAATTTGGCACGAGGTTCTTTTCTGCTGTTCGGTCGTACTTCGGGCCAGCAGAGGTGACATGACAGTTACCTGTTCTGAGAGGGATGGTGTCGTTGCCGATCTCCGTTTAGCGGATTCCTTTTATTCGAAATATGAGGTTCGTGATGTCTTGGGTTCAGGGGCCAGTAGTACTGTGCGACGTTGCATAGAAAAAGACTCTAAAACCGAATTCGCTGTTAAAATTTTAGATCTAAATAGTGGTGTTGATACCTCAGAAGTTATACGTTCAGAATGTATGCGAGAAGTGACTATTCTTAGAAAAGTAGTCGATCACCCCAATATCATAAGAATTCATGATGTTTTCGAAGGGGATGCATACATATTTCTAGTCTCAGAAATTTGTCAAGGTGGTGAACTTTTCGACTATCT-AACCCACAACGTCATCATTTCCGAAAAACGTACTCGTGTAATCATGCGGCAGCTGTTCGATGCTGTTAATTTTATCCACGAGCGTCAAATTGTTCATCGAGATCTTAAGCCGGAAAACATTCTTCTTGATGAAAATCTCAACATAAAAGTTACGGACTTTGGGTTGGCTGTATTTGTTGATGATGAAGAAGAGCTTAAAGAAACTCGTGGAACACCAGGTTACTTGGCCCCAGAGGTCCTGATGTGTGGTTACTATGAAGATCAGCCTNCTTATGGT]

[+] EMBL CD079602             [CCAANAATTTGGCACGAGGTTCTTTTCTGCTGTTCGGTCGTACTTCGGGCCAGCAGAGGTGACATGACAGTTACCTGTTCTGAGAGGGATGGTGTCGTTGCCGATCTCCGTTTAGCGGATTCCTTTTATTCGAAATATGAGGTTCGTGATGTCTTGGGTTCAGGGGCCAGTAGTACTGTGCGACGTTGCATAGAAAAAGACTCTAAAACCGAATTCGCTGTTAAAATTTTAGATCTAAATAGTGGTGTTGATACCTCAGAAGTTATACGTTCAGAATGTATGCGAGAAGTGACTATTCTTAGAAAAGTAGTCGATCACCCCAATATCATAAGAATTCATGATGTTTTCGAAGGGGATGCATACATATTTCTAGTCTCAGAAATTTGTCAAGGTGGTGAACTTTTCGACTATCT AACCCACAACGTCATCATTTCCGAAAAACGTACTCGTGTAATCATGCGGCAGCTGTTCGATGCTGTTAATTTTATCCACGAGCGTCAAATTGTTCATCGAGATCTTAAGCCGGAAAACATTCTTCTTGATGAAAATCTCAACATAAAAGTTACGGACTTTGGGTTGGCTGTATTTGTTGATGATGAAGAAGAGCTTAAAGAAACTCGTGGAACACCAGGTTACTTGGCCCCAGAGGTCCTGATGTGTGGTTACTATGAAGATCAGCCTNCTTATGGT]
[+] EMBL CD136759             [                                                                                                                                        ATGAGGTTCGTGATGTCTTGGGTTCAGGGGCCAGTAGTACTGTGCGACGTTGCATAGAAAAAGACTCTAAAACCGAATTCGCTGTTAAAATTTTAGATCTAAATAGTGGTGTTGATACCTCAGAAGTTATACGTTCAGAATGTATGCGAGAAGTGACTATTCTTAGAAAAGTAGTCGATCACCCCAATATCATAAGAATTCATGATGTTTTCGAAGGGGATGCATACATATTTCTAGTCTCAGAAATTTGTCAAGGTGGTGAACTTTTCGACTATCT AACCCACAACGTCATCATTTCCGAAAAACGTACTCGTGTAATCATGCGGCAGCTGTTCGATGCTGTTAATTTTATCCACGAGCGTCAAATTGTTCATCGAGATCTTAAGCCGNAAAACATTCTTCTTGATGAAAATCTCAACATAn                                                                                                                                   ]
[+] EMBL CD071654             [                                                                                                                                                                                                                                                                                  AATGTATGCGAGAAGTGACTATTCTTAGAAAAGTAGTCGATCACCCCAATATCATAAGAATTCATGATGTTTTCGAAGGGGATGCATACATATTTCTAGTCTCAGAAATTTGTCAAGGTGGTGAACTTTTCGACTATCTAAACCCAC ACGT                                                                                                                                                                                                                                                                         ]




>consensus_6614#0
CCAANAATTTGGCACGAGGTTCTTTTCTGCTGTTCGGTCGTACTTCGGGCCAGCAGAGGT
GACATGACAGTTACCTGTTCTGAGAGGGATGGTGTCGTTGCCGATCTCCGTTTAGCGGAT
TCCTTTTATTCGAAATATGAGGTTCGTGATGTCTTGGGTTCAGGGGCCAGTAGTACTGTG
CGACGTTGCATAGAAAAAGACTCTAAAACCGAATTCGCTGTTAAAATTTTAGATCTAAAT
AGTGGTGTTGATACCTCAGAAGTTATACGTTCAGAATGTATGCGAGAAGTGACTATTCTT
AGAAAAGTAGTCGATCACCCCAATATCATAAGAATTCATGATGTTTTCGAAGGGGATGCA
TACATATTTCTAGTCTCAGAAATTTGTCAAGGTGGTGAACTTTTCGACTATCTAACCCAC
AACGTCATCATTTCCGAAAAACGTACTCGTGTAATCATGCGGCAGCTGTTCGATGCTGTT
AATTTTATCCACGAGCGTCAAATTGTTCATCGAGATCTTAAGCCGGAAAACATTCTTCTT
GATGAAAATCTCAACATAAAAGTTACGGACTTTGGGTTGGCTGTATTTGTTGATGATGAA
GAAGAGCTTAAAGAAACTCGTGGAACACCAGGTTACTTGGCCCCAGAGGTCCTGATGTGT
GGTTACTATGAAGATCAGCCTNCTTATGGT

consensusID : consensus_6614#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 308
fasta sequence

                              [TGGCGGTATTTTGTTTTCTGCTGTTCGGTCGTACTTCGGGCCAGCAGAGGTGACATGACAGTTACCTGTTCTGAGAGGGATGGTGTCGTTGCCGATCTCCGTTTAGCGGATTCCTTTTATTCGAAATATGAGGTTCGTGATGTCTTGGGTTCAGGGGCCAGTAGTACTGTGCGACGTTGCATAGAACAAGACTCTAAAACCGAATTCGCTGTTAAAATTTTAGATCTAAATAGTGGTGTTGATACCTCAGAAGTTATACGTTCAGAATGTATGCGAGAAGTGACTATTCTTCAGAAAAGTAGTCGATC]

[+] EMBL CD097781             [TGGCGGTATTTTGTTTTCTGCTGTTCGGTCGTACTTCGGGCCAGCAGAGGTGACATGACAGTTACCTGTTCTGAGAGGGATGGTGTCGTTGCCGATCTCCGTTTAGCGGATTCCTTTTATTCGAAATATGAGGTTCGTGATGTCTTGGGTTCAGGGGCCAGTAGTACTGTGCGACGTTGCATAGAACAAGACTCTAAAACCGAATTCGCTGTTAAAATTTTAGATCTAAATAGTGGTGTTGATACCTCAGAAGTTATACGTTCAGAATGTATGCGAGAAGTGACTATTCTTCAGAAAAGTAGTCGATC]




>consensus_6614#1
TGGCGGTATTTTGTTTTCTGCTGTTCGGTCGTACTTCGGGCCAGCAGAGGTGACATGACA
GTTACCTGTTCTGAGAGGGATGGTGTCGTTGCCGATCTCCGTTTAGCGGATTCCTTTTAT
TCGAAATATGAGGTTCGTGATGTCTTGGGTTCAGGGGCCAGTAGTACTGTGCGACGTTGC
ATAGAACAAGACTCTAAAACCGAATTCGCTGTTAAAATTTTAGATCTAAATAGTGGTGTT
GATACCTCAGAAGTTATACGTTCAGAATGTATGCGAGAAGTGACTATTCTTCAGAAAAGT
AGTCGATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6614#0      CCAANAATTTGGCACGAGGTTCTTTTCTGCTGTTCGGTCGTACTTCGGGCCAGCAGAGGT 60
consensus_6614#1      ---------TGGCGGTATTTTGTTTTCTGCTGTTCGGTCGTACTTCGGGCCAGCAGAGGT 51
                               ****   *  ** **************************************

consensus_6614#0      GACATGACAGTTACCTGTTCTGAGAGGGATGGTGTCGTTGCCGATCTCCGTTTAGCGGAT 120
consensus_6614#1      GACATGACAGTTACCTGTTCTGAGAGGGATGGTGTCGTTGCCGATCTCCGTTTAGCGGAT 111
                      ************************************************************

consensus_6614#0      TCCTTTTATTCGAAATATGAGGTTCGTGATGTCTTGGGTTCAGGGGCCAGTAGTACTGTG 180
consensus_6614#1      TCCTTTTATTCGAAATATGAGGTTCGTGATGTCTTGGGTTCAGGGGCCAGTAGTACTGTG 171
                      ************************************************************

consensus_6614#0      CGACGTTGCATAGAAAAAGACTCTAAAACCGAATTCGCTGTTAAAATTTTAGATCTAAAT 240
consensus_6614#1      CGACGTTGCATAGAACAAGACTCTAAAACCGAATTCGCTGTTAAAATTTTAGATCTAAAT 231
                      *************** ********************************************

consensus_6614#0      AGTGGTGTTGATACCTCAGAAGTTATACGTTCAGAATGTATGCGAGAAGTGACTATTCTT 300
consensus_6614#1      AGTGGTGTTGATACCTCAGAAGTTATACGTTCAGAATGTATGCGAGAAGTGACTATTCTT 291
                      ************************************************************

consensus_6614#0      -AGAAAAGTAGTCGATCACCCCAATATCATAAGAATTCATGATGTTTTCGAAGGGGATGC 359
consensus_6614#1      CAGAAAAGTAGTCGATC------------------------------------------- 308
                       ****************                                           

consensus_6614#0      ATACATATTTCTAGTCTCAGAAATTTGTCAAGGTGGTGAACTTTTCGACTATCTAACCCA 419
consensus_6614#1      ------------------------------------------------------------
                                                                                  

consensus_6614#0      CAACGTCATCATTTCCGAAAAACGTACTCGTGTAATCATGCGGCAGCTGTTCGATGCTGT 479
consensus_6614#1      ------------------------------------------------------------
                                                                                  

consensus_6614#0      TAATTTTATCCACGAGCGTCAAATTGTTCATCGAGATCTTAAGCCGGAAAACATTCTTCT 539
consensus_6614#1      ------------------------------------------------------------
                                                                                  

consensus_6614#0      TGATGAAAATCTCAACATAAAAGTTACGGACTTTGGGTTGGCTGTATTTGTTGATGATGA 599
consensus_6614#1      ------------------------------------------------------------
                                                                                  

consensus_6614#0      AGAAGAGCTTAAAGAAACTCGTGGAACACCAGGTTACTTGGCCCCAGAGGTCCTGATGTG 659
consensus_6614#1      ------------------------------------------------------------
                                                                                  

consensus_6614#0      TGGTTACTATGAAGATCAGCCTNCTTATGGT 690
consensus_6614#1      -------------------------------