cluster # 6617

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Schistosoma mansoni
cluster # 6617 cluster # 6617 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6617#0 length = 608 sequences # 3

consensus_6617#1 length = 420 sequences # 1

consensusID : consensus_6617#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 608
fasta sequence

                              [CCCAAGGTCACTTTATCGCCGCTCGAAAGCCTGTTTTTTTTGGTCATAGATCTCAAATCATTGAGAAACATGTTTTTGTATTTTTGTTTTTTTAAATGTAGGTTTTTTTAATAGCATTAACTTGATTATATCTGTGCGTTCCAATTTCCCAATATACAGAAATGTCTGGAGCTTTTGCGCAAAATAGCTCTAGATACGTAATCGCTCATGAAGCAACAAGTGCCAAGCGC-------CTTTTAGATGAGAATGAACATATCATCGAATTAGTTGCTGACCTTGCTAGAAAAGGTCGATTCCGTGAATCGGTCCAACTCCAGGCCGTTCTTCAACGTAATTTAGTTTATCTTGTGTCGTTAGTTGATCAGAATAACTTGGATTCAAAGCAGACAGTCGACACTGACACTTGCTAAATAAGTATCCTTTTATTCAGTGTAATTTACTTCAAGCTCAACTAATTCGGCTTCTATTACTTTTGCCACATGATCTTTCATTNTGATAAATTTATGTACACACTCTGTCATCCTACTGATCTTGCTGNTCATCATTTCTTTTGTTTCTTCTTTCAAGACAACCTTTGTTTTAATTCATCCTTTTGACATAATCAGAACTCT]

[+] EMBL CD078976             [CCCAAGGTCACTTTATCGCCGCTCGAAAGCCTGTTTTTTTTGGTCATAGATCTCAAATCATTGAGAAACATGTTTTTGTATTTTTGTTTTTTTAAATGTAGGTTTTTTTAATAGCATTAACTTGATTATATCTGTGCGTTCCAATTTCCCAATATACAGAAATGTCTGGAGCTTTTGCGCAAAATAGCTCTAGATACGTAATCGCTCATGAAGCAACAAGTGCCAAGCGC       CTTTTAGATGAGAATGAACATATCATCGAATTAGTTGCTGACCTTGCTAGAAAAGGTCGATTCCGTGAATCGGTCCAACTCCAGGCCGTTCTTCAACGTAATTTAGTTTATCTTGTGTCGTTAGTTGATCAGAATAACTTGGATTCAAAGCAGACAGTCGACACTGACACTTGCTAAATAAGTATCCTTTTATTCAGTGTAATTTACTTCAAGCTCAACTAATTCGGCTTCTATTACTTTTGCCACATGATCTTTCATTNTGATAAATTTATGTACACACTCTGTCATCCTACTGATCTTGCTGNTCATCATTTCTTTTGTTTCTTCTTTCAAGACAACCTTTGTTTTAATTCATCCTTTTGACATAATCAGAACTCT]
[+] EMBL CD186493             [                                                                                                              ATAGCATTAACTTGATTATATCTGTGCGTTCCAATTTCCCAATATACAGAAATGTCTGGAGCTTTTGCGCAAAATAGCTCTAGATACGTAATCGCTCATGAAGCAACAAGTGCCAAGCGCCTCTTAGCTTTTAGATGAGAATGAACATATCATCGAATTAGTTGCTGACCTTGCTAGAAAAGGTCGATTCCGTGAATCGGTCCAACTCCAGGCCGTTCTTCAACGTAATTTAGTTTATCTTGTGTCGTTAGTTGATCAGAATAACTTGGATTCAAAGCAGACAGTCGACACTGACACTTGCTAAATAAGTATCCTTTTATTCAGTGTAATTTACTTCAAGCTCAACTAATTCGGCTTCT                                                                                                                                                  ]
[+] EMBL CD071852             [                                                                                                                                                                                                                                                                                                                                   CGTTCTTCAACGTAATTTAGTTTATCTTGTGTCGTTAGTTGATCAGAATAACTTGGATTCAAAGCAGACAGTCGACACTGACACTTGCTAAATAAGTATCCTTTTATTCAGTGTAATTTACTTCAAGCTCAACTAATTCGGCTTCTATTACTTTTGCCACATGATCTTTCATTTTGA                                                                                                                   ]




>consensus_6617#0
CCCAAGGTCACTTTATCGCCGCTCGAAAGCCTGTTTTTTTTGGTCATAGATCTCAAATCA
TTGAGAAACATGTTTTTGTATTTTTGTTTTTTTAAATGTAGGTTTTTTTAATAGCATTAA
CTTGATTATATCTGTGCGTTCCAATTTCCCAATATACAGAAATGTCTGGAGCTTTTGCGC
AAAATAGCTCTAGATACGTAATCGCTCATGAAGCAACAAGTGCCAAGCGCCTTTTAGATG
AGAATGAACATATCATCGAATTAGTTGCTGACCTTGCTAGAAAAGGTCGATTCCGTGAAT
CGGTCCAACTCCAGGCCGTTCTTCAACGTAATTTAGTTTATCTTGTGTCGTTAGTTGATC
AGAATAACTTGGATTCAAAGCAGACAGTCGACACTGACACTTGCTAAATAAGTATCCTTT
TATTCAGTGTAATTTACTTCAAGCTCAACTAATTCGGCTTCTATTACTTTTGCCACATGA
TCTTTCATTNTGATAAATTTATGTACACACTCTGTCATCCTACTGATCTTGCTGNTCATC
ATTTCTTTTGTTTCTTCTTTCAAGACAACCTTTGTTTTAATTCATCCTTTTGACATAATC
AGAACTCT

consensusID : consensus_6617#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 420
fasta sequence

                              [CCTAGCTCTAGTAAATAGATGGACACTCCCAAGGTCACTTTATCGCCGCTCGAAAGCTGTTTTTTTTGGTCATAGATCTCAAATCATTGAGAAACATGTTTTTGTATTTTGTTTTTTTAAANGTAGGTTTTTTAATAGCATTAACTTGATTATATCTGTGCGTTCCAATTTCCCAATATACAGAAATGTCTGGAGCTTTTGCGCAAAATAGCTCTAGATACGTAATCGCTCATGAAGCAACAAGTGCCAAGCGCGTAAGTGCTCATAAATTGTCGTTCCTCAAGCTCTTAGCTTTTAGATGAGAATGAACATATCATCGAATTAGTTGCTGACCTTGCTAGAAAAGGTCGATTCCGTGAATCGGTCCAACTCCAGGCCGTTCTTCAACGTAATTTAGTTTATCTTGTGTCGTTAGTTGAT]

[-] EMBL CD139649             [CCTAGCTCTAGTAAATAGATGGACACTCCCAAGGTCACTTTATCGCCGCTCGAAAGCTGTTTTTTTTGGTCATAGATCTCAAATCATTGAGAAACATGTTTTTGTATTTTGTTTTTTTAAANGTAGGTTTTTTAATAGCATTAACTTGATTATATCTGTGCGTTCCAATTTCCCAATATACAGAAATGTCTGGAGCTTTTGCGCAAAATAGCTCTAGATACGTAATCGCTCATGAAGCAACAAGTGCCAAGCGCGTAAGTGCTCATAAATTGTCGTTCCTCAAGCTCTTAGCTTTTAGATGAGAATGAACATATCATCGAATTAGTTGCTGACCTTGCTAGAAAAGGTCGATTCCGTGAATCGGTCCAACTCCAGGCCGTTCTTCAACGTAATTTAGTTTATCTTGTGTCGTTAGTTGAT]




>consensus_6617#1
CCTAGCTCTAGTAAATAGATGGACACTCCCAAGGTCACTTTATCGCCGCTCGAAAGCTGT
TTTTTTTGGTCATAGATCTCAAATCATTGAGAAACATGTTTTTGTATTTTGTTTTTTTAA
ANGTAGGTTTTTTAATAGCATTAACTTGATTATATCTGTGCGTTCCAATTTCCCAATATA
CAGAAATGTCTGGAGCTTTTGCGCAAAATAGCTCTAGATACGTAATCGCTCATGAAGCAA
CAAGTGCCAAGCGCGTAAGTGCTCATAAATTGTCGTTCCTCAAGCTCTTAGCTTTTAGAT
GAGAATGAACATATCATCGAATTAGTTGCTGACCTTGCTAGAAAAGGTCGATTCCGTGAA
TCGGTCCAACTCCAGGCCGTTCTTCAACGTAATTTAGTTTATCTTGTGTCGTTAGTTGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6617#0      ---------------------------CCCAAGGTCACTTTATCGCCGCTCGAAAGCCTG 33
consensus_6617#1      CCTAGCTCTAGTAAATAGATGGACACTCCCAAGGTCACTTTATCGCCGCTCGAAAGC-TG 59
                                                 ****************************** **

consensus_6617#0      TTTTTTTTGGTCATAGATCTCAAATCATTGAGAAACATGTTTTTGTATTTTTGTTTTTTT 93
consensus_6617#1      TTTTTTTTGGTCATAGATCTCAAATCATTGAGAAACATGTTTTTGTATTTT-GTTTTTTT 118
                      *************************************************** ********

consensus_6617#0      AAATGTAGGTTTTTTTAATAGCATTAACTTGATTATATCTGTGCGTTCCAATTTCCCAAT 153
consensus_6617#1      AAANGTAGGTTTTTT-AATAGCATTAACTTGATTATATCTGTGCGTTCCAATTTCCCAAT 177
                      *** *********** ********************************************

consensus_6617#0      ATACAGAAATGTCTGGAGCTTTTGCGCAAAATAGCTCTAGATACGTAATCGCTCATGAAG 213
consensus_6617#1      ATACAGAAATGTCTGGAGCTTTTGCGCAAAATAGCTCTAGATACGTAATCGCTCATGAAG 237
                      ************************************************************

consensus_6617#0      CAACAAGTGCCAAGCGC-------------------------------------CTTTTA 236
consensus_6617#1      CAACAAGTGCCAAGCGCGTAAGTGCTCATAAATTGTCGTTCCTCAAGCTCTTAGCTTTTA 297
                      *****************                                     ******

consensus_6617#0      GATGAGAATGAACATATCATCGAATTAGTTGCTGACCTTGCTAGAAAAGGTCGATTCCGT 296
consensus_6617#1      GATGAGAATGAACATATCATCGAATTAGTTGCTGACCTTGCTAGAAAAGGTCGATTCCGT 357
                      ************************************************************

consensus_6617#0      GAATCGGTCCAACTCCAGGCCGTTCTTCAACGTAATTTAGTTTATCTTGTGTCGTTAGTT 356
consensus_6617#1      GAATCGGTCCAACTCCAGGCCGTTCTTCAACGTAATTTAGTTTATCTTGTGTCGTTAGTT 417
                      ************************************************************

consensus_6617#0      GATCAGAATAACTTGGATTCAAAGCAGACAGTCGACACTGACACTTGCTAAATAAGTATC 416
consensus_6617#1      GAT--------------------------------------------------------- 420
                      ***                                                         

consensus_6617#0      CTTTTATTCAGTGTAATTTACTTCAAGCTCAACTAATTCGGCTTCTATTACTTTTGCCAC 476
consensus_6617#1      ------------------------------------------------------------
                                                                                  

consensus_6617#0      ATGATCTTTCATTNTGATAAATTTATGTACACACTCTGTCATCCTACTGATCTTGCTGNT 536
consensus_6617#1      ------------------------------------------------------------
                                                                                  

consensus_6617#0      CATCATTTCTTTTGTTTCTTCTTTCAAGACAACCTTTGTTTTAATTCATCCTTTTGACAT 596
consensus_6617#1      ------------------------------------------------------------
                                                                                  

consensus_6617#0      AATCAGAACTCT 608
consensus_6617#1      ------------