cluster # 6635

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Schistosoma mansoni
cluster # 6635 cluster # 6635 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6635#0 length = 768 sequences # 2

consensus_6635#1 length = 346 sequences # 1
consensus_6635#2 length = 338 sequences # 1

consensusID : consensus_6635#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 768
fasta sequence

                              [GAAGGTTAGAAATAAATACTTGCAACTAAACTTCTCCAAATTTAGATCATTCAGTAAAGAAAATATACAGAAGAATCTAATGCTGCCATTTGCGCTTGATTATGTAGCCGAAGTGTAAGTCCAGCACCAAAGCCCATTCGACCTGGTATCATATTTAATGGTTCAAATGATTTGGTTTTTACATCAACCAATTTACTAAACAAGCAACTTGTAGCTCTCTGGTCAAAACCAGGTCCAAACACTGCAAATCGACAACGCTGACGGCTTATATCATTCGGATGTGAAGGATGGTAGATGGACAATCTACGTCTAAAATTATTCCACCACTTCCAAAATAATTCACAGAAAGATAAAGGACTAGTTGATTGACCTTCATGTGGGGCCGAAGCAAGACTAAGCTGATTGATCTTATTGATCAAAAGTTGGACTTTTGATGCTTCTTTCTGGTCACCAACTAAAAAAGCGATTATTCGACACCGTTTGATACCGGCTCAGTGGTCTAGAGGTTAAGCGTCCGCGCGCGAGACTGTTAGTTCCTGGGTCGGGATTCCGCGAGCGGGGTCGTGAGTGCGCACTGCTGAGGAGTTTCATCCTGGAGCGAGGCGGCCATCCAGTGCTTCCAGGTTTCTCATGGTGTTCTAGCTCGAATTGACTCATGAATTCAATTNTCCAACTTACTTATTTTTGTTNTATATTATTCATTACAGTGCATTTTTGATATGGCTATACTAAATGATTCAAATGTTTTTGGTATATAAAGACTCATTT]

[+] EMBL CD080628             [GAAGGTTAGAAATAAATACTTGCAACTAAACTTCTCCAAATTTAGATCATTCAGTAAAGAAAATATACAGAAGAATCTAATGCTGCCATTTGCGCTTGATTATGTAGCCGAAGTGTAAGTCCAGCACCAAAGCCCATTCGACCTGGTATCATATTTAATGGTTCAAATGATTTGGTTTTTACATCAACCAATTTACTAAACAAGCAACTTGTAGCTCTCTGGTCAAAACCAGGTCCAAACACTGCAAATCGACAACGCTGACGGCTTATATCATTCGGATGTGAAGGATGGTAGATGGACAATCTACGTCTAAAATTATTCCACCACTTCCAAAATAATTCACAGAAAGATAAAGGACTAGTTGATTGACCTTCATGTGGGGCCGAAGCAAGACTAAGCTGATTGATCTTATTGATCAAAAGTTGGACTTTTGATGCTTCTTTCTGGTCACCAACTAAAAAAGCGATTATTCGACACCGTTTGATACCGGCTCAGTGGTCTAGAGGTTAAGCGTCCGCGCGCGAGACTGTTAGTTCCTGGGTCGGGATTCCGCGAGCGGGGTCGTGAGTGCGCACTGCTGAGGAGTTTCATCCTGGAGCGAGGCGGCCATCCAGTGCTTCCAGGTTTCTCATGGTGTTCTAGCTCGAATTGACTCATGAATTCAATTNTCCAACTTACTTATTTTTGTTNTATATTATTCATTACAGTGCATTTT                                                     ]
[-] EMBL CD074537             [                                                                                                                                                                                                                                                                               CATTCGGATGTGAAGGATGGTAGATGGACAATCTACGTTTAAAATTATTCCCCCACTTCCAAAATAATTCCCAGAAAGATAAAGGACTAGTTGATTGCCCTTCATGTGGGGCCGAAGCAAGACTAAGCTGATTGATCTTATTGATCAAAAGTTGGACTTTTGATGCTTCTTTTTGGTCCCCAACTAAAAAAGCGATTATTCGACCCCGTTTGATACCGGCTCAGTGGTTTAAAGGTTAAGCGTCCGCGCGCGAGACTGTTAGTTCCTGGGTCGGGATTCCCCGAGCGGGGTCGTGAGTGCGCACTGCTGAGGAGTTTCATCCTGGAGCGAGGCGGCCATCCAGTGCTTCCAGGTTTTTCATGGTGTTTTAGCTCGAATTGACTCATGAATTCAATTTTCCAACTTACTTATTTTTGTTTTATATTATTCATTACAGTGCATTTTTGATATGGCTATACTAAATGATTCAAATGTTTTTGGTATATAAAGACTCATTT]




>consensus_6635#0
GAAGGTTAGAAATAAATACTTGCAACTAAACTTCTCCAAATTTAGATCATTCAGTAAAGA
AAATATACAGAAGAATCTAATGCTGCCATTTGCGCTTGATTATGTAGCCGAAGTGTAAGT
CCAGCACCAAAGCCCATTCGACCTGGTATCATATTTAATGGTTCAAATGATTTGGTTTTT
ACATCAACCAATTTACTAAACAAGCAACTTGTAGCTCTCTGGTCAAAACCAGGTCCAAAC
ACTGCAAATCGACAACGCTGACGGCTTATATCATTCGGATGTGAAGGATGGTAGATGGAC
AATCTACGTCTAAAATTATTCCACCACTTCCAAAATAATTCACAGAAAGATAAAGGACTA
GTTGATTGACCTTCATGTGGGGCCGAAGCAAGACTAAGCTGATTGATCTTATTGATCAAA
AGTTGGACTTTTGATGCTTCTTTCTGGTCACCAACTAAAAAAGCGATTATTCGACACCGT
TTGATACCGGCTCAGTGGTCTAGAGGTTAAGCGTCCGCGCGCGAGACTGTTAGTTCCTGG
GTCGGGATTCCGCGAGCGGGGTCGTGAGTGCGCACTGCTGAGGAGTTTCATCCTGGAGCG
AGGCGGCCATCCAGTGCTTCCAGGTTTCTCATGGTGTTCTAGCTCGAATTGACTCATGAA
TTCAATTNTCCAACTTACTTATTTTTGTTNTATATTATTCATTACAGTGCATTTTTGATA
TGGCTATACTAAATGATTCAAATGTTTTTGGTATATAAAGACTCATTT

consensusID : consensus_6635#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 346
fasta sequence

                              [ACTCATTCTCCCCTTCGTGCTACGCTAGCACACGAAGTACCTTTTGGCTAGACACCAACCTCAACAGTTTTGTTGTGCGCATTAGTTAAATTACTTAAGAATCCGGGTTAGAGACATTGCTGATTTATCTATTTTTTAAACTGGTTTTCAGGTTCGAGATAACTCACTAGTCTATAAATGAAGGTTAGAAATAAATACTTGCAACTAAACTTCTCCAAATTTAGATCATTCAGTAAAGTAAGCGAAGAGTTTAGTTTTTCAATGCGTTATCTGTAATACATTTCATTTACAATTAAGTGCATGAACACCTGGAAAATGTATGCCTTTCAATAGAGACGTCTGTCTT]

[+] EMBL CD078647             [ACTCATTCTCCCCTTCGTGCTACGCTAGCACACGAAGTACCTTTTGGCTAGACACCAACCTCAACAGTTTTGTTGTGCGCATTAGTTAAATTACTTAAGAATCCGGGTTAGAGACATTGCTGATTTATCTATTTTTTAAACTGGTTTTCAGGTTCGAGATAACTCACTAGTCTATAAATGAAGGTTAGAAATAAATACTTGCAACTAAACTTCTCCAAATTTAGATCATTCAGTAAAGTAAGCGAAGAGTTTAGTTTTTCAATGCGTTATCTGTAATACATTTCATTTACAATTAAGTGCATGAACACCTGGAAAATGTATGCCTTTCAATAGAGACGTCTGTCTT]




>consensus_6635#1
ACTCATTCTCCCCTTCGTGCTACGCTAGCACACGAAGTACCTTTTGGCTAGACACCAACC
TCAACAGTTTTGTTGTGCGCATTAGTTAAATTACTTAAGAATCCGGGTTAGAGACATTGC
TGATTTATCTATTTTTTAAACTGGTTTTCAGGTTCGAGATAACTCACTAGTCTATAAATG
AAGGTTAGAAATAAATACTTGCAACTAAACTTCTCCAAATTTAGATCATTCAGTAAAGTA
AGCGAAGAGTTTAGTTTTTCAATGCGTTATCTGTAATACATTTCATTTACAATTAAGTGC
ATGAACACCTGGAAAATGTATGCCTTTCAATAGAGACGTCTGTCTT

consensusID : consensus_6635#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 338
fasta sequence

                              [AAAGACAGACGTCTCTATTGAAAGGCATACATTTTCCAGGTGTTCATGCACTTAATTGTAAATGAAATGTATTACAGATAACGCATTGAAAAACTAAACTCTTCGCTTACTTTACTGAATGATCTAAATTTGGATAATTTTAGTTGCAAGTATTTATTTCTAACCTTCATTTATAGACTAGGGAGTTATCTCGAACCTGAAAACCAGTTTAAAAAATATATTAATCAACAATGTCTCTAACCCGGATTCTTAAATATTAAACTAATGCCCACAACAAACTGTTGAGGTTGGTGTTTACCCAAAAGTACTTCTTTTCTTCCGTCCCCAAAGGGAAAATA]

[+] EMBL CD073111             [AAAGACAGACGTCTCTATTGAAAGGCATACATTTTCCAGGTGTTCATGCACTTAATTGTAAATGAAATGTATTACAGATAACGCATTGAAAAACTAAACTCTTCGCTTACTTTACTGAATGATCTAAATTTGGATAATTTTAGTTGCAAGTATTTATTTCTAACCTTCATTTATAGACTAGGGAGTTATCTCGAACCTGAAAACCAGTTTAAAAAATATATTAATCAACAATGTCTCTAACCCGGATTCTTAAATATTAAACTAATGCCCACAACAAACTGTTGAGGTTGGTGTTTACCCAAAAGTACTTCTTTTCTTCCGTCCCCAAAGGGAAAATA]




>consensus_6635#2
AAAGACAGACGTCTCTATTGAAAGGCATACATTTTCCAGGTGTTCATGCACTTAATTGTA
AATGAAATGTATTACAGATAACGCATTGAAAAACTAAACTCTTCGCTTACTTTACTGAAT
GATCTAAATTTGGATAATTTTAGTTGCAAGTATTTATTTCTAACCTTCATTTATAGACTA
GGGAGTTATCTCGAACCTGAAAACCAGTTTAAAAAATATATTAATCAACAATGTCTCTAA
CCCGGATTCTTAAATATTAAACTAATGCCCACAACAAACTGTTGAGGTTGGTGTTTACCC
AAAAGTACTTCTTTTCTTCCGTCCCCAAAGGGAAAATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6635#1      ------------------------------------------------------------
consensus_6635#2      ------------------------------------------------------------
consensus_6635#0      GAAGGTTAGAAATAAATACTTGCAACTAAACTTCTCCAAATTTAGATCATTCAGTAAAGA 60
                                                                                  

consensus_6635#1      ------------------------------------------------------------
consensus_6635#2      ------------------------------------------------------------
consensus_6635#0      AAATATACAGAAGAATCTAATGCTGCCATTTGCGCTTGATTATGTAGCCGAAGTGTAAGT 120
                                                                                  

consensus_6635#1      ------------------------------------------------------------
consensus_6635#2      ------------------------------------------------------------
consensus_6635#0      CCAGCACCAAAGCCCATTCGACCTGGTATCATATTTAATGGTTCAAATGATTTGGTTTTT 180
                                                                                  

consensus_6635#1      -----------------------------------------------ACTCATTCTCCCC 13
consensus_6635#2      ---------------------------------------------------------AAA 3
consensus_6635#0      ACATCAACCAATTTACTAAACAAGCAACTTGTAGCTCTCTGGTCAAAACCAGGTCCAAAC 240
                                                                                  

consensus_6635#1      TTCGTGCTACGCTAGCAC--ACGAAGTACCTTTT--GGCTAGACACCAACCTCAACAGTT 69
consensus_6635#2      GACAGACGTCTCTATTGA--AAGGCATACATTTTCCAGGTGTTCATGCACTTAATTGTAA 61
consensus_6635#0      ACTGCAAATCGACAACGCTGACGGCTTATATCATTCGGATGTGAAGGATGGTAGATGGAC 300
                               *   *      * *   **  *  *   * *    *      *        

consensus_6635#1      TTGTTGTGCGCA---TTAGTTAAATTACTTAAGAATCCGGGTTAGAG----ACATTGCTG 122
consensus_6635#2      ATGAAATGTATT---ACAGATAACGCATTGAAAAACTAAACTCTTCGCT-TACTTTACTG 117
consensus_6635#0      AATCTACGTCTAAAATTATTCCACCACTTCCAAAATAATTCACAGAAAGATAAAGGACTA 360
                             *         *    *     *  * **                *     ** 

consensus_6635#1      ATTTATCTATTTTTTAAACTGGTTTTCAGGTTCGAG-ATAACTCACTAGTCTA--TAAAT 179
consensus_6635#2      AATGATCTAAATTTGGA--TAATTTT-AGTTGCAAGTATTTATTTCTAACCTT--CATTT 172
consensus_6635#0      GTTGATTGACCTTCATG--TGGGGCCGAAGCAAGACTA-AGCTGATTGATCTTATTGATC 417
                        * **  *  **      *       *      *  *    *   *   **        

consensus_6635#1      GAAGGTTAGAAATAA-ATACTTGCAACTAAACTTC---TCCAAATTTAGATCATTCAGTA 235
consensus_6635#2      ATAGACTAGGGAGTT-AT-CTCGAACCTGAAAACCAGTTTAAAAAATATATTAATCAACA 230
consensus_6635#0      AAAAGTTGGACTTTTGATGCTTCTTTCTGGTCACCAA-CTAAAAAAGCGATTATTCGACA 476
                        *   * *       ** **     **      *      ***     ** * **   *

consensus_6635#1      AAGTA-------AGCGAAGAGTTTAGTTTTTCAATGCGTTATCTGTAATACATTTCATTT 288
consensus_6635#2      ATGTCT----CTAACCCGGATTCTTAAATATTAAACTAATGCCCACAACAAACT--GTTG 284
consensus_6635#0      CCGTTTGATACCGGCTCAGTGGTCTAGAGGTTAAGCGTCCGCGCGCGAGACTGTTAGTTC 536
                        **          *   *           * **             * *   *   ** 

consensus_6635#1      ACAATTAAGTGCATGAACACCTGGAAAATGTATGCCTTTCAATAGAGACGTCTGTCTT-- 346
consensus_6635#2      AGGTTGGTGTTTACCCAAAAGTACTTCTTTTCTTCCGTCCCCAAAGGGAAAATA------ 338
consensus_6635#0      CTGGGTCGGGATTCCGCGAGCGGGGTCGTGAGTGCGCACTGCTGAGGAGTTTCATCCTGG 596
                              *         *         *   * *           *             

consensus_6635#1      ------------------------------------------------------------
consensus_6635#2      ------------------------------------------------------------
consensus_6635#0      AGCGAGGCGGCCATCCAGTGCTTCCAGGTTTCTCATGGTGTTCTAGCTCGAATTGACTCA 656
                                                                                  

consensus_6635#1      ------------------------------------------------------------
consensus_6635#2      ------------------------------------------------------------
consensus_6635#0      TGAATTCAATTNTCCAACTTACTTATTTTTGTTNTATATTATTCATTACAGTGCATTTTT 716
                                                                                  

consensus_6635#1      ----------------------------------------------------
consensus_6635#2      ----------------------------------------------------
consensus_6635#0      GATATGGCTATACTAAATGATTCAAATGTTTTTGGTATATAAAGACTCATTT 768