These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6639#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 761 fasta sequence [GTAACACGTTAATAAACTGTTAGTTTCGCCAGACCGATGCTGGAAAACCTTGGGATGTTGGATTCTCCTTCTGGCGACCCAAATGCTTTGAAGAAAGATGTGTCTGACCTAATGGCAGATGCGCGTAAATCAAGGAAGGCAGTATTCAGAAGAACAATCGATTATAATGCTTCTGCCATCAATTACCTTCAAAACAGGATTTGGGTCAGTAGGGACTTAGACCGTCCAATGCTTCAGCCGGATTACTTGTGGAGTCCTAAGTTGTGTCCTCCTAGGAGTTATATGGACTCTCCCATGAATTGCGTCATGTCGAAGCCTGTTCGTACATCTACTAACAAAAATAAATGCCCCATATATTGCGTTTGTTGGACACCTGAAGGGAGGCGGTTGATAACAGGAGCTTTCAGTGGTGAGTTTACTTTGTGGAATGGTTTGACGTTCAATTTCGAGACTATTTTACAGGCCCATGAGTCGCANATCCGTTGTATGAAATGGTCTCACAACGAAGAATGGTTACTCACTGCTGATCATTCTGGATATGTANAGTATTGGCAAGCTAATATGAACAATGTTGAAATGTATCAAGCACATAAGGAACCAATTCGTGGCGTAAGGTACGCTTTTCCTGGTTTGGAATCATCTTGTTCAGTTTCAACAACTTTGACTCTACATAAAACGATGACGATATTTAACAACTGTCTAGATTTATTTTACAAATTGTACTGTTTATTTTTAAGCACAAAATACACCAGTTGTAAAAT] [+] EMBL CD078717 [GTAACACGTTAATAAACTGTTAGTTTCGCCAGACCGATGCTGGAAAACCTTGGGATGTTGGATTCTCCTTCTGGCGACCCAAATGCTTTGAAGAAAGATGTGTCTGACCTAATGGCAGATGCGCGTAAATCAAGGAAGGCAGTATTCAGAAGAACAATCGATTATAATGCTTCTGCCATCAATTACCTTCAAAACAGGATTTGGGTCAGTAGGGACTTAGACCGTCCAATGCTTCAGCCGGATTACTTGTGGAGTCCTAAGTTGTGTCCTCCTAGGAGTTATATGGACTCTCCCATGAATTGCGTCATGTCGAAGCCTGTTCGTACATCTACTAACAAAAATAAATGCCCCATATATTGCGTTTGTTGGACACCTGAAGGGAGGCGGTTGATAACAGGAGCTTTCAGTGGTGAGTTTACTTTGTGGAATGGTTTGACGTTCAATTTCGAGACTATTTTACAGGCCCATGAGTCGCANATCCGTTGTATGAAATGGTCTCACAACGAAGAATGGTTACTCACTGCTGATCATTCTGGATATGTANAGTATTGGCAAGCTAATATGAACAATGTTGAAATGTATCAAGCACATAAGGAACCAATTCGTGGCGTAAGG ] [+] EMBL CD118244 [ AGTATTCAGAAGAACAATCGATTATAATGCTTCTGCCATCAATTACCTTCAAAACAGGATTTGGGTCAGTAGGGACTTAGACCGTCCAATGCTTCAGCCGGATTACTTGTGGAGTCCTAAGTTGTGTCCTCCTAGGAGTTATATGGACTCTCCC ] [-] EMBL CD073180 [ TCAGCCGGATTACTTGTGGAGTCCTAAGTTGTGTCCTCCTAGGAGTTATATGGACTCTCCCATGAATTGCGTCATGTCGAAGCCTGTTCGTACATCTACTAACAAAAATAAATGCCCCATATATTGCGTTTGTTGGACACCTGAAGGGAGGCGGTTGATAACAGGAGCTTTCAGTGGTGAGTTTACTTTGTGGAATGGTTTGACGTTCAATTTCGAGACTATTTTACAGGCCCATGAGTCGCAAATCCGTTGTATGAAATGGTCTCACAACGAAGAATGGTTACTCACTGCTGATCATTCTGGATATGTAAAGTATTGGCAAGCTAATATGAACAATGTTGAAATGTATCAAGCACATAAGGAACCAATTCGTGGCGTAAGGTACGCTTTTCCTGGTTTGGAATCATCTTGTTCAGTTTCAACAACTTTGACTCTACATAAAACGATGACGATATTTAACAACTGTCTAGATTTATTTTACAAATTGTACTGTTTATTTTTAAGCACAAAATACACCAGTTGTAAAAT] consensusID : consensus_6639#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 147 fasta sequence [TACGCGCATCTGCCATTAGGTCAGACACATCTTTCTTCAAAGCATTTGGGTCGCCAGAAGGAGAATCCAACATCCCAAGGTTTTCCAGCATCGGTATGTAGTTCAATACGTAGTCCCCAAGGCGACAACGAACCCGCCAGGAAAAGC] [+] EMBL CD095492 [TACGCGCATCTGCCATTAGGTCAGACACATCTTTCTTCAAAGCATTTGGGTCGCCAGAAGGAGAATCCAACATCCCAAGGTTTTCCAGCATCGGTATGTAGTTCAATACGTAGTCCCCAAGGCGACAACGAACCCGCCAGGAAAAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6639#0 GTAACACGTTAATAAACTGTTAGTTTCGCCAGACCGATGCTGGAAAACCTTGGGATGTTG 60 consensus_6639#1 ----TACGCGCATCTGCCATTAGGTCAGACACATCTTTCTTCAAAGCATTTGGGTCGCCA 56 *** ** * **** * * ** * * * * ** ***** * consensus_6639#0 GATTCTCCTTCTGGCGACCCAAATGCTTTGAAGAAAGATGTGTCTGACCTAATGGCAGAT 120 consensus_6639#1 GAAGGAGAATCCAACATCCCAAGGTTTTCCAGCATCGGTATGT--AGTTCAATAC--GTA 112 ** ** * ***** ** * * * * *** *** * consensus_6639#0 GCGCGTAAATCAAGGAAGGCAGTATTCAGAAGAACAATCGATTATAATGCTTCTGCCATC 180 consensus_6639#1 GTCCCCAAGGCGACAACGAACCCGCCAGGAAAAGC------------------------- 147 * * ** * * * * *** * * consensus_6639#0 AATTACCTTCAAAACAGGATTTGGGTCAGTAGGGACTTAGACCGTCCAATGCTTCAGCCG 240 consensus_6639#1 ------------------------------------------------------------ consensus_6639#0 GATTACTTGTGGAGTCCTAAGTTGTGTCCTCCTAGGAGTTATATGGACTCTCCCATGAAT 300 consensus_6639#1 ------------------------------------------------------------ consensus_6639#0 TGCGTCATGTCGAAGCCTGTTCGTACATCTACTAACAAAAATAAATGCCCCATATATTGC 360 consensus_6639#1 ------------------------------------------------------------ consensus_6639#0 GTTTGTTGGACACCTGAAGGGAGGCGGTTGATAACAGGAGCTTTCAGTGGTGAGTTTACT 420 consensus_6639#1 ------------------------------------------------------------ consensus_6639#0 TTGTGGAATGGTTTGACGTTCAATTTCGAGACTATTTTACAGGCCCATGAGTCGCANATC 480 consensus_6639#1 ------------------------------------------------------------ consensus_6639#0 CGTTGTATGAAATGGTCTCACAACGAAGAATGGTTACTCACTGCTGATCATTCTGGATAT 540 consensus_6639#1 ------------------------------------------------------------ consensus_6639#0 GTANAGTATTGGCAAGCTAATATGAACAATGTTGAAATGTATCAAGCACATAAGGAACCA 600 consensus_6639#1 ------------------------------------------------------------ consensus_6639#0 ATTCGTGGCGTAAGGTACGCTTTTCCTGGTTTGGAATCATCTTGTTCAGTTTCAACAACT 660 consensus_6639#1 ------------------------------------------------------------ consensus_6639#0 TTGACTCTACATAAAACGATGACGATATTTAACAACTGTCTAGATTTATTTTACAAATTG 720 consensus_6639#1 ------------------------------------------------------------ consensus_6639#0 TACTGTTTATTTTTAAGCACAAAATACACCAGTTGTAAAAT 761 consensus_6639#1 ----------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||