These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6640#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 813 fasta sequence [ATGTTTATTAATAAAAGTAGTTTTCTAATGAAATAAAATCACCTTTAATTATCAAATTAGTTATACTTACGATAAAATAAATTCATACCTGTTGGTACAATAAAAACTGTAATGAATGGACAAATAGTCCCTTGTAAAAATGAATTAAATAAATGTAACATATTAAAATGACTTGTCATCACTTTATTACTAATATTAATTGTAAAAAGACTGATTAGCTGGTTACACATTGATTCCATAAACCTTGTACTGATAACCACAATTAATAAACTGAATAGAATAATCGGTAAGGAATTTGTTCCCAATACTGATTGTTTAAAATGTGTTGGTTTAAGACGTAAACCTAAAGATAAACCAGTAGCAGTCCCAGCAATTCGTGAAAATCCCATCATAAGACTTGTTGACAAGTGGATCCATTCTG-GTTGTAAACATGCTGATTGTGCTAAAGTTATACTCCAATTAGGATCTACTTTTATACCATACTCTAAGAATACGCTGAAAACGTATGCAAACATGAATGAACCGAAGCCCAACCACAATAGTCTATTTGGATGAGTTAAAAGATAAACAGTTTGTACATGTAACCAGTTTATTTTGACTTCGTTTTTCGGACTGAGGAAACCATCAGGTGAACTAAATAATAACCCAACTGTGATACTTCAAAGTTTTGAATCCACTGTATAAACTGGATGCCATTATTATGTATCCTATTCATTTTTAGTGCAACAGACTTTTGAATGATGTTCTTTCAGGACTAGAGACAAGCAAAATGTAAAGGGCCCTGAACAATAGCCGCGATATGTCAATCACGAT] [+] EMBL CD073182 [ATGTTTATTAATAAAAGTAGTTTTCTAATGAAATAAAATCACCTTTAATTATCAAATTAGTTATACTTACGATAAAATAAATTCATACCTGTTGGTACAATAAAAACTGTAATGAATGGACAAATAGTCCCTTGTAAAAATGAATTAAATAAATGTAACATATTAAAATGACTTGTCATCACTTTATTACTAATATTAATTGTAAAAAGACTGATTAGCTGGTTACACATTGATTCCATAAACCTTGTACTGATAACCACAATTAATAAACTGAATAGAATAATCGGTAAGGAATTTGTTCCCAATACTGATTGTTTAAAATGTGTTGGTTTAAGACGTAAACCTAAAGATAAACCAGTAGCAGTCCCAGCAATTCGTGAAAATCCCATCATAAGACTTGTTGACAAGTGGATCCATTCTG GTTGTAAACATGCTGATTGTGCTAAAGTTATACTCCAATTAGGATCTACTTTTATACCATACTCTAAGAATACGCTGAAAACGTATGCAAACATGAATGAACCGAAGCCCAACCACAATAGTCTATTTGGATGAGTTAAAAGATAAACAGTTTGTACATGTAACCAGT ] [-] EMBL CD084383 [ ACCTGTTGGTACAATAAAAACTGTAATGAATGGACAAATAGTCCCTTGTAAAAATGAATTAAATAAATGTAACATATTAAAATGACTTGTCATCACTTTATTACTAATATTAATTGTAAAAAGACTGATTAGCTGGTTACACATTGATTCCATAAACCTTGTACTGATAACCACAATTAATAAACTGAATAGAATAATCGGTAAGGAATTTGTTCCCAATACTGATTGTTTAAAATGTGTTGGTTTAAGACGTAAACCTAAAGATAAACCAGTAGCAGTCCCAGCAATTCGTGAAAATCCCATCATAAGACTTGTTGACAAGTGGATCCATTCTGNGTTGTAAACATGCTGATTGTGCTAAAGTTATACTCCAATTAGGATCTACTTTTATACCATACTCTAAGAATACGCTGAAAACGTATGCAAACATGAATGAACCGAAGCCCAACCc ] [+] EMBL CD189706 [ AAAATCCCATCATAAGACTTGTTGACAAGTGGATCCATTCTG GTTGTAAACATGCTGATTGTGCTAAAGTTATACTCCAATTAGGATCTACTTTTATACCATACTCTAAGAATACGCTGAAAACGTATGCAAACATGAATGAACCGAAGCCCAACCACAATAGTCTATTTGAATGAGTTAAAAGATAAACAGTTTGTACATGTAACCAGTTTATTTTGACTTCGTTTTTCGGACTGAGGAAACCATCAGGTGAACTAAATAATAACCCAACTGTGATACTTCAAAGTTTTGAATCCACTGTATAAACTGGATGCCATTATTATGTATCCTATTCATTTTTAGTGCAACAGACTTTTGAATGATGTTCTTTCAGGACTAGAGACAAGCAAAATGTAAAGGGCCCTGAACAATAGCCGCGATATGTCAATCACGAT] consensusID : consensus_6640#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 557 fasta sequence [TCTTCAAGGTTTTGAATCCACTGTATAAACTGGATGCCATTATTATGTATCCTATTCATTTTTAGTGCAACAGACTTNTGAATGATGTTCTTTCAGGACTAGAGACAAGCAAAATGTAAAGGGCCCTGAACAATAGCCTAAGTAAAGATATGCGAAAAGTAAAAGGTAAATGAAACACAAAAATGAATGAGCTCATCATATAAAGTTAACTCATCTCGTATACCACTTCACATATTAAACAATATAATATTGTGGACAGTGATCACAGACAATCGAACGATACGTCATATAAGTTTCTTTTTAAATCCTCAAAGTAAGTAGATGATAACTGTATTCCGTTGTTTTCACTAACCGGATACCGTAAGAATCTGATCTTCTACATACATTCATTATCTTATCAAAGATTTTTAAGGTCTGATACAAACAGATGAGTGAAGTATTGTTAAAGGACTTGACATTTTTCACAAGACAAGGAAATCAACCTTCATTTTATGCTATCAGCCAAATCACGTGATGCTCGGAAGTTTGTGGTGCATTGGGATTCATATCATGTAAAT] [-] EMBL CD078719 [TCTTCAAGGTTTTGAATCCACTGTATAAACTGGATGCCATTATTATGTATCCTATTCATTTTTAGTGCAACAGACTTNTGAATGATGTTCTTTCAGGACTAGAGACAAGCAAAATGTAAAGGGCCCTGAACAATAGCCTAAGTAAAGATATGCGAAAAGTAAAAGGTAAATGAAACACAAAAATGAATGAGCTCATCATATAAAGTTAACTCATCTCGTATACCACTTCACATATTAAACAATATAATATTGTGGACAGTGATCACAGACAATCGAACGATACGTCATATAAGTTTCTTTTTAAATCCTCAAAGTAAGTAGATGATAACTGTATTCCGTTGTTTTCACTAACCGGATACCGTAAGAATCTGATCTTCTACATACATTCATTATCTTATCAAAGATTTTTAAGGTCTGATACAAACAGATGAGTGAAGTATTGTTAAAGGACTTGACATTTTTCACAAGACAAGGAAATCAACCTTCATTTTATGCTATCAGCCAAATCACGTGATGCTCGGAAGTTTGTGGTGCATTGGGATTCATATCATGTAAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6640#0 ATGTTTATTAATAAAAGTAGTTTTCTAATGAAATAAAATCACCTTTAATTATCAAATTAG 60 consensus_6640#1 ------------------------------------------------------------ consensus_6640#0 TTATACTTACGATAAAATAAATTCATACCTGTTGGTACAATAAAAACTGTAATGAATGGA 120 consensus_6640#1 ------------------------------------------------------------ consensus_6640#0 CAAATAGTCCCTTGTAAAAATGAATTAAATAAATGTAACATATTAAAATGACTTGTCATC 180 consensus_6640#1 ------------------------------------------------------------ consensus_6640#0 ACTTTATTACTAATATTAATTGTAAAAAGACTGATTAGCTGGTTACACATTGATTCCATA 240 consensus_6640#1 ------------------------------------------------------------ consensus_6640#0 AACCTTGTACTGATAACCACAATTAATAAACTGAATAGAATAATCG-GTAAGGAATTTGT 299 consensus_6640#1 -TCTTCAAGGTTTTGAATCCACTGTATAAACTGGATGCCATTATTATGTATCCTATTCAT 59 * * * * * ** * ******** ** ** ** *** *** * consensus_6640#0 TCCCAATAC--TGATTGTTTAAAATGTGTTGGTTTAAGACGTAAACCTAAAGATAAACCA 357 consensus_6640#1 TTTTAGTGCAACAGACTTNTGAATGATGTTCTTTCAGGACTAGAG---ACAAGCAAAATG 116 * * * * * * ** **** ** * *** * * * *** consensus_6640#0 GTAGCAGTCCCAGCAATTCGTGAAAATCCCATCATAAGACTTGTTGACAAGTGGATCCAT 417 consensus_6640#1 TAAAGGGCCCTGAACAATAGCCTAAGTAAAGATATGCGAAAAGT-AAAAGGTAAATGAAA 175 * * ** * * * ** * ** ** ** * * ** ** * consensus_6640#0 TCTGGTTGTAAACATGCTGATTGTGCTAAAGTTATACTCCAATTAGGATCTACTTT-TAT 476 consensus_6640#1 CACAAAAATGAATGAGCTCATCATA-TAAAGTTA-ACTCATCTCGTATACCACTTCACAT 233 * ** *** ** * ******** **** * * **** ** consensus_6640#0 ACCATACTCTAAGAATACGCTGAAAACGTATGCAAACATGAATGAACCGAAGCCCAACCA 536 consensus_6640#1 ATTAAACAATATAATATTGTGGACAGTGATCACAGAC---AATCGAACGATAC---GTCA 287 * * ** ** * * ** * * ** ** *** * *** * ** consensus_6640#0 CAATAGTCTATTTGGATGAGTTAAAAGATAAACAGTTTGTACATGTAACCAGTTTATTTT 596 consensus_6640#1 TATAAGTTTCTTTTTAAATCCTCAAAG-TAAGTAGATGATAACTGTATTCCGTT-GTTTT 345 * *** * *** * * **** *** ** * ** **** * *** **** consensus_6640#0 GACT--TCGTTTTTCGGACTGAGGAAACCATCAGGTGAACTAAATAATAACCCAACTGTG 654 consensus_6640#1 CACTAACCGGATACCG---TAAGAATCTGATCTTCTACATACATTCATTATCTTATCA-A 401 *** ** * ** * ** * *** * * * * ** * * * consensus_6640#0 ATACTTCAAAGTTTTGAATCCACTGTATAAACTGGATGCCATTATTATGTATCCTATTCA 714 consensus_6640#1 AGATTTTTAAGGTCTGATACAAACAGATGAGTGAAGTATTGTTAAAGGACTTGACATTT- 460 * * ** *** * *** * * ** * * *** * *** consensus_6640#0 TTTTTAGTGCAACAGACTTTTGAATGATGTTCTTTCAGGACTAGAGACAAGCAAAATGTA 774 consensus_6640#1 TTCACAAGACAAGGAAATCAACCTTCATTTTATGCTATCAGCCAAATCACGTGATGCTCG 520 ** * *** * * * ** ** * * * * ** * * consensus_6640#0 AAGGGCCCTGA-ACAATAG---CCGCGATATGTCAATCACGAT 813 consensus_6640#1 GAAGTTTGTGGTGCATTGGGATTCATATCATGTAAAT------ 557 * * ** ** * * * **** *** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||