cluster # 6640

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Schistosoma mansoni
cluster # 6640 cluster # 6640 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6640#0 length = 813 sequences # 3

consensus_6640#1 length = 557 sequences # 1

consensusID : consensus_6640#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 813
fasta sequence

                              [ATGTTTATTAATAAAAGTAGTTTTCTAATGAAATAAAATCACCTTTAATTATCAAATTAGTTATACTTACGATAAAATAAATTCATACCTGTTGGTACAATAAAAACTGTAATGAATGGACAAATAGTCCCTTGTAAAAATGAATTAAATAAATGTAACATATTAAAATGACTTGTCATCACTTTATTACTAATATTAATTGTAAAAAGACTGATTAGCTGGTTACACATTGATTCCATAAACCTTGTACTGATAACCACAATTAATAAACTGAATAGAATAATCGGTAAGGAATTTGTTCCCAATACTGATTGTTTAAAATGTGTTGGTTTAAGACGTAAACCTAAAGATAAACCAGTAGCAGTCCCAGCAATTCGTGAAAATCCCATCATAAGACTTGTTGACAAGTGGATCCATTCTG-GTTGTAAACATGCTGATTGTGCTAAAGTTATACTCCAATTAGGATCTACTTTTATACCATACTCTAAGAATACGCTGAAAACGTATGCAAACATGAATGAACCGAAGCCCAACCACAATAGTCTATTTGGATGAGTTAAAAGATAAACAGTTTGTACATGTAACCAGTTTATTTTGACTTCGTTTTTCGGACTGAGGAAACCATCAGGTGAACTAAATAATAACCCAACTGTGATACTTCAAAGTTTTGAATCCACTGTATAAACTGGATGCCATTATTATGTATCCTATTCATTTTTAGTGCAACAGACTTTTGAATGATGTTCTTTCAGGACTAGAGACAAGCAAAATGTAAAGGGCCCTGAACAATAGCCGCGATATGTCAATCACGAT]

[+] EMBL CD073182             [ATGTTTATTAATAAAAGTAGTTTTCTAATGAAATAAAATCACCTTTAATTATCAAATTAGTTATACTTACGATAAAATAAATTCATACCTGTTGGTACAATAAAAACTGTAATGAATGGACAAATAGTCCCTTGTAAAAATGAATTAAATAAATGTAACATATTAAAATGACTTGTCATCACTTTATTACTAATATTAATTGTAAAAAGACTGATTAGCTGGTTACACATTGATTCCATAAACCTTGTACTGATAACCACAATTAATAAACTGAATAGAATAATCGGTAAGGAATTTGTTCCCAATACTGATTGTTTAAAATGTGTTGGTTTAAGACGTAAACCTAAAGATAAACCAGTAGCAGTCCCAGCAATTCGTGAAAATCCCATCATAAGACTTGTTGACAAGTGGATCCATTCTG GTTGTAAACATGCTGATTGTGCTAAAGTTATACTCCAATTAGGATCTACTTTTATACCATACTCTAAGAATACGCTGAAAACGTATGCAAACATGAATGAACCGAAGCCCAACCACAATAGTCTATTTGGATGAGTTAAAAGATAAACAGTTTGTACATGTAACCAGT                                                                                                                                                                                                                                ]
[-] EMBL CD084383             [                                                                                      ACCTGTTGGTACAATAAAAACTGTAATGAATGGACAAATAGTCCCTTGTAAAAATGAATTAAATAAATGTAACATATTAAAATGACTTGTCATCACTTTATTACTAATATTAATTGTAAAAAGACTGATTAGCTGGTTACACATTGATTCCATAAACCTTGTACTGATAACCACAATTAATAAACTGAATAGAATAATCGGTAAGGAATTTGTTCCCAATACTGATTGTTTAAAATGTGTTGGTTTAAGACGTAAACCTAAAGATAAACCAGTAGCAGTCCCAGCAATTCGTGAAAATCCCATCATAAGACTTGTTGACAAGTGGATCCATTCTGNGTTGTAAACATGCTGATTGTGCTAAAGTTATACTCCAATTAGGATCTACTTTTATACCATACTCTAAGAATACGCTGAAAACGTATGCAAACATGAATGAACCGAAGCCCAACCc                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD189706             [                                                                                                                                                                                                                                                                                                                                                                                           AAAATCCCATCATAAGACTTGTTGACAAGTGGATCCATTCTG GTTGTAAACATGCTGATTGTGCTAAAGTTATACTCCAATTAGGATCTACTTTTATACCATACTCTAAGAATACGCTGAAAACGTATGCAAACATGAATGAACCGAAGCCCAACCACAATAGTCTATTTGAATGAGTTAAAAGATAAACAGTTTGTACATGTAACCAGTTTATTTTGACTTCGTTTTTCGGACTGAGGAAACCATCAGGTGAACTAAATAATAACCCAACTGTGATACTTCAAAGTTTTGAATCCACTGTATAAACTGGATGCCATTATTATGTATCCTATTCATTTTTAGTGCAACAGACTTTTGAATGATGTTCTTTCAGGACTAGAGACAAGCAAAATGTAAAGGGCCCTGAACAATAGCCGCGATATGTCAATCACGAT]




>consensus_6640#0
ATGTTTATTAATAAAAGTAGTTTTCTAATGAAATAAAATCACCTTTAATTATCAAATTAG
TTATACTTACGATAAAATAAATTCATACCTGTTGGTACAATAAAAACTGTAATGAATGGA
CAAATAGTCCCTTGTAAAAATGAATTAAATAAATGTAACATATTAAAATGACTTGTCATC
ACTTTATTACTAATATTAATTGTAAAAAGACTGATTAGCTGGTTACACATTGATTCCATA
AACCTTGTACTGATAACCACAATTAATAAACTGAATAGAATAATCGGTAAGGAATTTGTT
CCCAATACTGATTGTTTAAAATGTGTTGGTTTAAGACGTAAACCTAAAGATAAACCAGTA
GCAGTCCCAGCAATTCGTGAAAATCCCATCATAAGACTTGTTGACAAGTGGATCCATTCT
GGTTGTAAACATGCTGATTGTGCTAAAGTTATACTCCAATTAGGATCTACTTTTATACCA
TACTCTAAGAATACGCTGAAAACGTATGCAAACATGAATGAACCGAAGCCCAACCACAAT
AGTCTATTTGGATGAGTTAAAAGATAAACAGTTTGTACATGTAACCAGTTTATTTTGACT
TCGTTTTTCGGACTGAGGAAACCATCAGGTGAACTAAATAATAACCCAACTGTGATACTT
CAAAGTTTTGAATCCACTGTATAAACTGGATGCCATTATTATGTATCCTATTCATTTTTA
GTGCAACAGACTTTTGAATGATGTTCTTTCAGGACTAGAGACAAGCAAAATGTAAAGGGC
CCTGAACAATAGCCGCGATATGTCAATCACGAT

consensusID : consensus_6640#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 557
fasta sequence

                              [TCTTCAAGGTTTTGAATCCACTGTATAAACTGGATGCCATTATTATGTATCCTATTCATTTTTAGTGCAACAGACTTNTGAATGATGTTCTTTCAGGACTAGAGACAAGCAAAATGTAAAGGGCCCTGAACAATAGCCTAAGTAAAGATATGCGAAAAGTAAAAGGTAAATGAAACACAAAAATGAATGAGCTCATCATATAAAGTTAACTCATCTCGTATACCACTTCACATATTAAACAATATAATATTGTGGACAGTGATCACAGACAATCGAACGATACGTCATATAAGTTTCTTTTTAAATCCTCAAAGTAAGTAGATGATAACTGTATTCCGTTGTTTTCACTAACCGGATACCGTAAGAATCTGATCTTCTACATACATTCATTATCTTATCAAAGATTTTTAAGGTCTGATACAAACAGATGAGTGAAGTATTGTTAAAGGACTTGACATTTTTCACAAGACAAGGAAATCAACCTTCATTTTATGCTATCAGCCAAATCACGTGATGCTCGGAAGTTTGTGGTGCATTGGGATTCATATCATGTAAAT]

[-] EMBL CD078719             [TCTTCAAGGTTTTGAATCCACTGTATAAACTGGATGCCATTATTATGTATCCTATTCATTTTTAGTGCAACAGACTTNTGAATGATGTTCTTTCAGGACTAGAGACAAGCAAAATGTAAAGGGCCCTGAACAATAGCCTAAGTAAAGATATGCGAAAAGTAAAAGGTAAATGAAACACAAAAATGAATGAGCTCATCATATAAAGTTAACTCATCTCGTATACCACTTCACATATTAAACAATATAATATTGTGGACAGTGATCACAGACAATCGAACGATACGTCATATAAGTTTCTTTTTAAATCCTCAAAGTAAGTAGATGATAACTGTATTCCGTTGTTTTCACTAACCGGATACCGTAAGAATCTGATCTTCTACATACATTCATTATCTTATCAAAGATTTTTAAGGTCTGATACAAACAGATGAGTGAAGTATTGTTAAAGGACTTGACATTTTTCACAAGACAAGGAAATCAACCTTCATTTTATGCTATCAGCCAAATCACGTGATGCTCGGAAGTTTGTGGTGCATTGGGATTCATATCATGTAAAT]




>consensus_6640#1
TCTTCAAGGTTTTGAATCCACTGTATAAACTGGATGCCATTATTATGTATCCTATTCATT
TTTAGTGCAACAGACTTNTGAATGATGTTCTTTCAGGACTAGAGACAAGCAAAATGTAAA
GGGCCCTGAACAATAGCCTAAGTAAAGATATGCGAAAAGTAAAAGGTAAATGAAACACAA
AAATGAATGAGCTCATCATATAAAGTTAACTCATCTCGTATACCACTTCACATATTAAAC
AATATAATATTGTGGACAGTGATCACAGACAATCGAACGATACGTCATATAAGTTTCTTT
TTAAATCCTCAAAGTAAGTAGATGATAACTGTATTCCGTTGTTTTCACTAACCGGATACC
GTAAGAATCTGATCTTCTACATACATTCATTATCTTATCAAAGATTTTTAAGGTCTGATA
CAAACAGATGAGTGAAGTATTGTTAAAGGACTTGACATTTTTCACAAGACAAGGAAATCA
ACCTTCATTTTATGCTATCAGCCAAATCACGTGATGCTCGGAAGTTTGTGGTGCATTGGG
ATTCATATCATGTAAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6640#0      ATGTTTATTAATAAAAGTAGTTTTCTAATGAAATAAAATCACCTTTAATTATCAAATTAG 60
consensus_6640#1      ------------------------------------------------------------
                                                                                  

consensus_6640#0      TTATACTTACGATAAAATAAATTCATACCTGTTGGTACAATAAAAACTGTAATGAATGGA 120
consensus_6640#1      ------------------------------------------------------------
                                                                                  

consensus_6640#0      CAAATAGTCCCTTGTAAAAATGAATTAAATAAATGTAACATATTAAAATGACTTGTCATC 180
consensus_6640#1      ------------------------------------------------------------
                                                                                  

consensus_6640#0      ACTTTATTACTAATATTAATTGTAAAAAGACTGATTAGCTGGTTACACATTGATTCCATA 240
consensus_6640#1      ------------------------------------------------------------
                                                                                  

consensus_6640#0      AACCTTGTACTGATAACCACAATTAATAAACTGAATAGAATAATCG-GTAAGGAATTTGT 299
consensus_6640#1      -TCTTCAAGGTTTTGAATCCACTGTATAAACTGGATGCCATTATTATGTATCCTATTCAT 59
                        * *     *  * *   ** *  ******** **   ** **   ***    ***  *

consensus_6640#0      TCCCAATAC--TGATTGTTTAAAATGTGTTGGTTTAAGACGTAAACCTAAAGATAAACCA 357
consensus_6640#1      TTTTAGTGCAACAGACTTNTGAATGATGTTCTTTCAGGACTAGAG---ACAAGCAAAATG 116
                      *   * * *        * * **   ****  ** * ***   *    * *   ***   

consensus_6640#0      GTAGCAGTCCCAGCAATTCGTGAAAATCCCATCATAAGACTTGTTGACAAGTGGATCCAT 417
consensus_6640#1      TAAAGGGCCCTGAACAATAGCCTAAGTAAAGATATGCGAAAAGT-AAAAGGTAAATGAAA 175
                        *   * **     * * *   ** *      **  **   **  * * **  **  * 

consensus_6640#0      TCTGGTTGTAAACATGCTGATTGTGCTAAAGTTATACTCCAATTAGGATCTACTTT-TAT 476
consensus_6640#1      CACAAAAATGAATGAGCTCATCATA-TAAAGTTA-ACTCATCTCGTATACCACTTCACAT 233
                              * **   *** **  *  ******** ****   *      * ****   **

consensus_6640#0      ACCATACTCTAAGAATACGCTGAAAACGTATGCAAACATGAATGAACCGAAGCCCAACCA 536
consensus_6640#1      ATTAAACAATATAATATTGTGGACAGTGATCACAGAC---AATCGAACGATAC---GTCA 287
                      *  * **  **  *    *  ** *  *    ** **   ***  * ***  *     **

consensus_6640#0      CAATAGTCTATTTGGATGAGTTAAAAGATAAACAGTTTGTACATGTAACCAGTTTATTTT 596
consensus_6640#1      TATAAGTTTCTTTTTAAATCCTCAAAG-TAAGTAGATGATAACTGTATTCCGTT-GTTTT 345
                       *  *** * ***  *     * **** ***  ** *  **  ****  * ***  ****

consensus_6640#0      GACT--TCGTTTTTCGGACTGAGGAAACCATCAGGTGAACTAAATAATAACCCAACTGTG 654
consensus_6640#1      CACTAACCGGATACCG---TAAGAATCTGATCTTCTACATACATTCATTATCTTATCA-A 401
                       ***   **  *  **   * ** *    ***   *  *   * * ** * *  *     

consensus_6640#0      ATACTTCAAAGTTTTGAATCCACTGTATAAACTGGATGCCATTATTATGTATCCTATTCA 714
consensus_6640#1      AGATTTTTAAGGTCTGATACAAACAGATGAGTGAAGTATTGTTAAAGGACTTGACATTT- 460
                      * * **  *** * ***  * *    ** *      *    ***       *   ***  

consensus_6640#0      TTTTTAGTGCAACAGACTTTTGAATGATGTTCTTTCAGGACTAGAGACAAGCAAAATGTA 774
consensus_6640#1      TTCACAAGACAAGGAAATCAACCTTCATTTTATGCTATCAGCCAAATCACGTGATGCTCG 520
                      **   *   ***   * *      * ** ** *   *  *    *  ** *  *      

consensus_6640#0      AAGGGCCCTGA-ACAATAG---CCGCGATATGTCAATCACGAT 813
consensus_6640#1      GAAGTTTGTGGTGCATTGGGATTCATATCATGTAAAT------ 557
                       * *    **   ** * *    *     **** ***