cluster # 6647

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Schistosoma mansoni
cluster # 6647 cluster # 6647 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6647#0 length = 648 sequences # 1

consensus_6647#1 length = 553 sequences # 2
consensus_6647#2 length = 420 sequences # 1

consensusID : consensus_6647#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 648
fasta sequence

                              [CGGCACGACGACTACCCAGTCAGCAACTTTATATCATAATAAAAACACAATTGGAAATCTGGGAAAAAAAATTGTCCTATAAAAAAATTATTAATACACGAAATTCATCATTATTAACCAATTGTAGTTAGCTCCATTTTTTTTGAGATTTTGTGAAATAACTATGTTTTTCAGTATAGCTATTTTAAAGATTATTTTAATAACAATGTATTTCAATTATCTGGTTGCATACAGAACAATTAGAAGCGATGAAGAAATGAAGCATTATTCTCAAGATGCACTCACAACTAGATGTCAAATGGAATCGGAAATTGCACGAAATGTTTTTAGAGACACGATCGATTATCGTACAGATGATCCGTACATTGAAGATCTAATTGACATTTGGTTGAGAAAATGCATTCGGTCAAAAAGTATTAATCAAAGAAGCATACAGAAGCGCCCGTACTACGGCTGAGGCTGATTGCAATGAATATAGTGAAAATGTACACAACTTATTTCCAGTTGATTGTTACTTTCTTTATTGAAAATATACTATGATAAAGCTTCTTAGTTACAATATTGGCCTTAAAATTAGTTTAGCCAATGCTATGAATAAAATAAATTTCCATTAGGAAGGTGAATACTAAATCCATAAATAAACGTACC]

[+] EMBL CD081669             [CGGCACGACGACTACCCAGTCAGCAACTTTATATCATAATAAAAACACAATTGGAAATCTGGGAAAAAAAATTGTCCTATAAAAAAATTATTAATACACGAAATTCATCATTATTAACCAATTGTAGTTAGCTCCATTTTTTTTGAGATTTTGTGAAATAACTATGTTTTTCAGTATAGCTATTTTAAAGATTATTTTAATAACAATGTATTTCAATTATCTGGTTGCATACAGAACAATTAGAAGCGATGAAGAAATGAAGCATTATTCTCAAGATGCACTCACAACTAGATGTCAAATGGAATCGGAAATTGCACGAAATGTTTTTAGAGACACGATCGATTATCGTACAGATGATCCGTACATTGAAGATCTAATTGACATTTGGTTGAGAAAATGCATTCGGTCAAAAAGTATTAATCAAAGAAGCATACAGAAGCGCCCGTACTACGGCTGAGGCTGATTGCAATGAATATAGTGAAAATGTACACAACTTATTTCCAGTTGATTGTTACTTTCTTTATTGAAAATATACTATGATAAAGCTTCTTAGTTACAATATTGGCCTTAAAATTAGTTTAGCCAATGCTATGAATAAAATAAATTTCCATTAGGAAGGTGAATACTAAATCCATAAATAAACGTACC]




>consensus_6647#0
CGGCACGACGACTACCCAGTCAGCAACTTTATATCATAATAAAAACACAATTGGAAATCT
GGGAAAAAAAATTGTCCTATAAAAAAATTATTAATACACGAAATTCATCATTATTAACCA
ATTGTAGTTAGCTCCATTTTTTTTGAGATTTTGTGAAATAACTATGTTTTTCAGTATAGC
TATTTTAAAGATTATTTTAATAACAATGTATTTCAATTATCTGGTTGCATACAGAACAAT
TAGAAGCGATGAAGAAATGAAGCATTATTCTCAAGATGCACTCACAACTAGATGTCAAAT
GGAATCGGAAATTGCACGAAATGTTTTTAGAGACACGATCGATTATCGTACAGATGATCC
GTACATTGAAGATCTAATTGACATTTGGTTGAGAAAATGCATTCGGTCAAAAAGTATTAA
TCAAAGAAGCATACAGAAGCGCCCGTACTACGGCTGAGGCTGATTGCAATGAATATAGTG
AAAATGTACACAACTTATTTCCAGTTGATTGTTACTTTCTTTATTGAAAATATACTATGA
TAAAGCTTCTTAGTTACAATATTGGCCTTAAAATTAGTTTAGCCAATGCTATGAATAAAA
TAAATTTCCATTAGGAAGGTGAATACTAAATCCATAAATAAACGTACC

consensusID : consensus_6647#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 553
fasta sequence

                              [GAACAGACAAAGTTACTACCCAGTCAGCAACTTCATATCATAATAAAAACACAATTGAAATCTGGAAAAAAAATTGTCCTATAAAAAAATTATTAATACACGAAATTCATCATTATTAACCAATTGTAGTTAGCTCCATTTTTTTTGAGATTTTGTGAAATAACTATGTTTTTCAGTATAGCTATTTTAAAGATTATTTTAATAACAATGTATTTCAATTATCTGGTTGCATACAGAACAATTAGAAGCGATGAAGAAATGAAGCATTATTCTCAAGATGCACTCACAACTAGATGTCAAATGGAATCGGAAATTGCACGAAATGTTTTTAGAGACACGATCGATTATCGTACAGATGATCCGTACATTGAAGATCTAATTGACATTTGGTTGAGAAAATGCATTCGGTCAAAAAGTATTAATCAAAGAAGCATACAGAAGCGCCCGTACTACGGCTGAGGCTGATTGCAATGAATATAGTGAAAATGTACACAACTTATTTCCAGTTGATTGTTACTTTCTTTATTGAAAATATACTATGATAAAGCTTCTT]

[+] EMBL CD078965             [GAACAGACAAAGTTACTACCCAGTCAGCAACTTCATATCATAATAAAAACACAATTGAAATCTGGAAAAAAAATTGTCCTATAAAAAAATTATTAATACACGAAATTCATCATTATTAACCAATTGTAGTTAGCTCCATTTTTTTTGAGATTTTGTGAAATAACTATGTTTTTCAGTATAGCTATTTTAAAGATTATTTTAATAACAATGTATTTCAATTATCTGGTTGCATACAGAACAATTAGAAGCGATGAAGAAATGAAGCATTATTCTCAAGATGCACTCACAACTAGATGTCAAATGGAATCGGAAATTGCACGAAATGTTTTTAGAGACACGATCGATTATCGTACAGATGATCCGTACATTGAAGATCTAATTGACATTTGGTTGAGAAAATGCATTCGGTCAAAAAGTATTAATCAAAGAAGCATACAGAAGCGCCCGTACTACGGCTGAGGCTGATTGCAATGAATATAGTGAAAATGTACACAACTTATTTCCAGTTGATTGTTACTTTCTTTATTGAAAATATACTATGATAAAGCTTCTT]
[-] EMBL CD073418             [                                                                      AAATTGTCCTATAAAAAAATTATTAATACACGAAATTCATCATTATTACCCAATTGTAGTTAGCTCCATTTTTTTTGAGATTTTGTGAAATAACTATGTTTTTCAGTATAGCTATTTTAAAGATTATTTTAATACCAATGTATTTCAATTATCTGGTGGCATCCAGACCAATTAGAAGCGATGAAGAAATGAAGCATTATTTTCAAGATGCACTCCCAATTAGATGTCAAATGGAATCGGAAATTGCACGAAATGTTTTTAGAGACACGATCGATTATCGTACAGATGATCCGTACATTGAAGATTTAATTGACATTTGGTTGAGAAAATGCATTCGGTCAAAAAGTATTAATCAAAGAAGCATACAGAAGCGCCCGTATTACGGCTGAGGCTGATTGCAATGAATATAGTGAAAATGTACCCAACTTATTTCCAGTTGATTGTTACTTTCTTTATTGAAAATATACTATGATAAAGCTT   ]




>consensus_6647#1
GAACAGACAAAGTTACTACCCAGTCAGCAACTTCATATCATAATAAAAACACAATTGAAA
TCTGGAAAAAAAATTGTCCTATAAAAAAATTATTAATACACGAAATTCATCATTATTAAC
CAATTGTAGTTAGCTCCATTTTTTTTGAGATTTTGTGAAATAACTATGTTTTTCAGTATA
GCTATTTTAAAGATTATTTTAATAACAATGTATTTCAATTATCTGGTTGCATACAGAACA
ATTAGAAGCGATGAAGAAATGAAGCATTATTCTCAAGATGCACTCACAACTAGATGTCAA
ATGGAATCGGAAATTGCACGAAATGTTTTTAGAGACACGATCGATTATCGTACAGATGAT
CCGTACATTGAAGATCTAATTGACATTTGGTTGAGAAAATGCATTCGGTCAAAAAGTATT
AATCAAAGAAGCATACAGAAGCGCCCGTACTACGGCTGAGGCTGATTGCAATGAATATAG
TGAAAATGTACACAACTTATTTCCAGTTGATTGTTACTTTCTTTATTGAAAATATACTAT
GATAAAGCTTCTT

consensusID : consensus_6647#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 420
fasta sequence

                              [ATTACCAATTGTAGTAAGCACCATTTTTTTGAGATTTTGTGAAATACTATGTATTCAGTATAGCTATTTTAAGATTATTTTAATAACAATGTATCCAATTATCATGGTCGCATACAGAACAATTATAGCGATGAAGATATGAAGCATTATTCTCAAGATGCACTCACAACTAGATGTCAAATGGAATCGGATATTGCACGATATGTTTTTAGAGACACGATCGATTATCGTACAGATGATCCGTACATAGAAGATCTAATTGACATTTGGTTGAGAAAATGCATTCGGTCAAAAAGTATCAATCAGAGAAGCATACAGACGCGCCCGTACTACGGCTGAGGCTGATTGCAATGATATAGTGAAACGCACACACTTATCTCCAGTTGATCGTTACTTTCTTATGAAATATACTATGACAAC]

[+] EMBL AI447048             [ATTACCAATTGTAGTAAGCACCATTTTTTTGAGATTTTGTGAAATACTATGTATTCAGTATAGCTATTTTAAGATTATTTTAATAACAATGTATCCAATTATCATGGTCGCATACAGAACAATTATAGCGATGAAGATATGAAGCATTATTCTCAAGATGCACTCACAACTAGATGTCAAATGGAATCGGATATTGCACGATATGTTTTTAGAGACACGATCGATTATCGTACAGATGATCCGTACATAGAAGATCTAATTGACATTTGGTTGAGAAAATGCATTCGGTCAAAAAGTATCAATCAGAGAAGCATACAGACGCGCCCGTACTACGGCTGAGGCTGATTGCAATGATATAGTGAAACGCACACACTTATCTCCAGTTGATCGTTACTTTCTTATGAAATATACTATGACAAC]




>consensus_6647#2
ATTACCAATTGTAGTAAGCACCATTTTTTTGAGATTTTGTGAAATACTATGTATTCAGTA
TAGCTATTTTAAGATTATTTTAATAACAATGTATCCAATTATCATGGTCGCATACAGAAC
AATTATAGCGATGAAGATATGAAGCATTATTCTCAAGATGCACTCACAACTAGATGTCAA
ATGGAATCGGATATTGCACGATATGTTTTTAGAGACACGATCGATTATCGTACAGATGAT
CCGTACATAGAAGATCTAATTGACATTTGGTTGAGAAAATGCATTCGGTCAAAAAGTATC
AATCAGAGAAGCATACAGACGCGCCCGTACTACGGCTGAGGCTGATTGCAATGATATAGT
GAAACGCACACACTTATCTCCAGTTGATCGTTACTTTCTTATGAAATATACTATGACAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6647#0      ----CGGCACGACGACTACCCAGTCAGCAACTTTATATCATAATAAAAACACAATTGGAA 56
consensus_6647#1      GAACAGACAAAGTTACTACCCAGTCAGCAACTTCATATCATAATAAAAACACAATTG-AA 59
consensus_6647#2      ------------------------------------------------------------
                                                                                  

consensus_6647#0      ATCTGGGAAAAAAAATTGTCCTATAAAAAAATTATTAATACACGAAATTCATCATTATTA 116
consensus_6647#1      ATCTGG-AAAAAAAATTGTCCTATAAAAAAATTATTAATACACGAAATTCATCATTATTA 118
consensus_6647#2      --------------------------------------------------------ATTA 4
                                                                              ****

consensus_6647#0      ACCAATTGTAGTTAGCTCCATTTTTTTTGAGATTTTGTGAAATAACTATGTTTTTCAGTA 176
consensus_6647#1      ACCAATTGTAGTTAGCTCCATTTTTTTTGAGATTTTGTGAAATAACTATGTTTTTCAGTA 178
consensus_6647#2      -CCAATTGTAGTAAGCACCATTTTTTT-GAGATTTTGTGAAATA-CTATGTATT-CAGTA 60
                       *********** *** ********** **************** ****** ** *****

consensus_6647#0      TAGCTATTTTAAAGATTATTTTAATAACAATGTATTTCAATTATC-TGGTTGCATACAGA 235
consensus_6647#1      TAGCTATTTTAAAGATTATTTTAATAACAATGTATTTCAATTATC-TGGTTGCATACAGA 237
consensus_6647#2      TAGCTATTTTAA-GATTATTTTAATAACAATGTATC-CAATTATCATGGTCGCATACAGA 118
                      ************ **********************  ******** **** *********

consensus_6647#0      ACAATTAGAAGCGATGAAGAAATGAAGCATTATTCTCAAGATGCACTCACAACTAGATGT 295
consensus_6647#1      ACAATTAGAAGCGATGAAGAAATGAAGCATTATTCTCAAGATGCACTCACAACTAGATGT 297
consensus_6647#2      ACAATTATA-GCGATGAAGATATGAAGCATTATTCTCAAGATGCACTCACAACTAGATGT 177
                      ******* * ********** ***************************************

consensus_6647#0      CAAATGGAATCGGAAATTGCACGAAATGTTTTTAGAGACACGATCGATTATCGTACAGAT 355
consensus_6647#1      CAAATGGAATCGGAAATTGCACGAAATGTTTTTAGAGACACGATCGATTATCGTACAGAT 357
consensus_6647#2      CAAATGGAATCGGATATTGCACGATATGTTTTTAGAGACACGATCGATTATCGTACAGAT 237
                      ************** ********* ***********************************

consensus_6647#0      GATCCGTACATTGAAGATCTAATTGACATTTGGTTGAGAAAATGCATTCGGTCAAAAAGT 415
consensus_6647#1      GATCCGTACATTGAAGATCTAATTGACATTTGGTTGAGAAAATGCATTCGGTCAAAAAGT 417
consensus_6647#2      GATCCGTACATAGAAGATCTAATTGACATTTGGTTGAGAAAATGCATTCGGTCAAAAAGT 297
                      *********** ************************************************

consensus_6647#0      ATTAATCAAAGAAGCATACAGAAGCGCCCGTACTACGGCTGAGGCTGATTGCAATGAATA 475
consensus_6647#1      ATTAATCAAAGAAGCATACAGAAGCGCCCGTACTACGGCTGAGGCTGATTGCAATGAATA 477
consensus_6647#2      ATCAATCAGAGAAGCATACAGACGCGCCCGTACTACGGCTGAGGCTGATTGCAATGA-TA 356
                      ** ***** ************* ********************************** **

consensus_6647#0      TAGTGAAAATGTACACAACTTATTTCCAGTTGATTGTTACTTTCTTTATTGAAAATATAC 535
consensus_6647#1      TAGTGAAAATGTACACAACTTATTTCCAGTTGATTGTTACTTTCTTTATTGAAAATATAC 537
consensus_6647#2      TAGTGAAA-CGCACACA-CTTATCTCCAGTTGATCGTTACTTTCTT-AT--GAAATATAC 411
                      ********  * ***** ***** ********** *********** **   ********

consensus_6647#0      TATGATAAAGCTTCTTAGTTACAATATTGGCCTTAAAATTAGTTTAGCCAATGCTATGAA 595
consensus_6647#1      TATGATAAAGCTTCTT-------------------------------------------- 553
consensus_6647#2      TATGACAAC--------------------------------------------------- 420
                      ***** **                                                    

consensus_6647#0      TAAAATAAATTTCCATTAGGAAGGTGAATACTAAATCCATAAATAAACGTACC 648
consensus_6647#1      -----------------------------------------------------
consensus_6647#2      -----------------------------------------------------