|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6648#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 613 fasta sequence
[AGTATAGATGTATATTTGTCTTGTAAAATAAGTCAATATAATTTTAAACAAATGGAAACAAATATTATATTTAACAGTATAATAATATTAGTAACTGAACGTCTGATCTAATTTCACATTAAGTAGATTGAAAGAAGCATATAAATTATTACGTAACTGTCTTTAAATTATTGATTAGTCAATAGGGTAATGTATATAATTTAATCAATCCCCATACTATGTGCAACAACTTCACGCCACATCTTTTGTACTGGAAGTGGATAGAATTCATTGTAAAATGATACTAAAAAGATACAGTCTGCAAGTAAACCTTCTTCTTTTGCAGGTTTCAAGTTCAAATAACTATGTCCATCTTGAAATCGCAACCTTGGTATACCTAGATTTTGGGCTAAAATTCCTGTTACATAGACATCATCTATCCATATAGGGGGTTGAAACATTGAACACCAATATAAGTAGGGTGCCAGTTTCATATCCATAATATATCCAAAACCTTCGCAATATGTTGGAAATATTTTTTCGGGATATTCTTTATCACTTATTTCCCACTTGGAATGTTTGATACTGTTTGGTCGTACAACCTTAATATTACTTGTAGCAGTACAGTAGAATA]
[+] EMBL CD074046 [AGTATAGATGTATATTTGTCTTGTAAAATAAGTCAATATAATTTTAAACAAATGGAAACAAATATTATATTTAACAGTATAATAATATTAGTAACTGAACGTCTGATCTAATTTCACATTAAGTAGATTGAAAGAAGCATATAAATTATTACGTAACTGTCTTTAAATTATTGATTAGTCAATAGGGTAATGTATATAATTTAATCAATCCCCATACTATGTGCAACAACTTCACGCCACATCTTTTGTACTGGAAGTGGATAGAATTCATTGTAAAATGATACTAAAAAGATACAGTCTGCAAGTAAACCTTCTTCTTTTGCAGGTTTCAAGTTCAAATAACTATGTCCATCTTGAAATCGCAACCTTGGTATACCTAGATTTTGGGCTAAAATTCCTGTTACATAGACATCATCTATCCATATAGGGGGTTGAAACATTGAACACCAATATAAGTAGGGTGCCAGTTTCATATCCATAATATATCCAAAACCTTCGCAATATGTTGGAAATATTTTTTCGGGATATTCTTTATCACTTATTTCCCACTTGGAATGTTTGATACTGTTTGGTCGTACAACCTTAATATTACTTGTAGCAGTACAGTAGAATA]
[+] EMBL CD073419 [AGTATAGATGTATATTTGTCTTGTAAAATAAGTCAATATAATTTTAAATAAATGGAAACAAATATTATATTTAACAGTATAATAATATTAGTAACTGAACGTTTGATCTAATTTCACATTAAGTAGATTGAAAGAAGCATATAAATTATTACGTAACTGTCTTTAAATTATTGATTAGTCAATAGGGTAATGTATATAATTTAATCAATCCCCATACTATGTGCAACAACTTCACGCCACATCTCTTGTACTGTAAGTGGATAGAATTCATTGTAAAATGATACTAAAAAGATACAGTCTGCAAGTAAACCTTCTTCTTTTGCAGGTTTCAAGTTCAAATAACTATGTCCATCTTGAAATCGCAACCTTGGTATACCTAGATTTTGTGCTAAAATTCCTGTTACATAGACATCATCTATCCATATAGGTGGTTGAAACATTGAACACCAATATAAGTAGGGTGCCAGTTTCATATCCATAATATATCCAAAACCTTCGCAATATGTTGGAAATATTTTTTCGGGATATTCTTTATCACTTATTTCCCACTTGGAATGTTTAATACTGTTTGGTCGTACAACCTTAATATTAC ]
consensusID : consensus_6648#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 425 fasta sequence
[TACGAGCCAANAATTTGGCACGAGGTTTATCAAGAATGGCCGACAACAATCCATAGGAAATTAGAGTTACATAATAAAAATTCAAATTTTAATGATATAAGTAAAGTATTTAATTTATGCGCCAAAAATAAAGATGCTATACCTATACTTATTGAAAATAGTGATTTTATATTTAGTCAATCAACATATTGTTATAAACAAACGAATCTATGGATATTAATCGCTGTACATACACATCCAAATCATCGTCAAAAAAGAGATTTAATTCGTGGAACATGGGGATCATTAAGACGTGTTAATAATCGTAAAATTGGTATTCTTTTTTTTATGGGTTTATCAAATGATTTAAAAGAACAAAAATTAATTGAAGAAGAAGAACGAATTTATGGTGACATTGTTCAACGAGCATTTCTGGAAAATTACTA]
[+] EMBL CD079788 [TACGAGCCAANAATTTGGCACGAGGTTTATCAAGAATGGCCGACAACAATCCATAGGAAATTAGAGTTACATAATAAAAATTCAAATTTTAATGATATAAGTAAAGTATTTAATTTATGCGCCAAAAATAAAGATGCTATACCTATACTTATTGAAAATAGTGATTTTATATTTAGTCAATCAACATATTGTTATAAACAAACGAATCTATGGATATTAATCGCTGTACATACACATCCAAATCATCGTCAAAAAAGAGATTTAATTCGTGGAACATGGGGATCATTAAGACGTGTTAATAATCGTAAAATTGGTATTCTTTTTTTTATGGGTTTATCAAATGATTTAAAAGAACAAAAATTAATTGAAGAAGAAGAACGAATTTATGGTGACATTGTTCAACGAGCATTTCTGGAAAATTACTA]
[+] EMBL CD078966 [ AAAAATTCAAATTTTAATGATATAAGTAAAGTATTTAATTTATGCGCCAAAAATAAAGATGCTATACCTATACTTATTGAAAATAGTGATTTTATATTTAGTCAATCAACATATTGTTATAAACAAACGAATCTATGGATATTAATCGCTGTACATACACATCCAAATCATCGTCAAAAAAGAGATTTAATTCGTGGAACATGGGGATCATTAAGACGTGTTAATAATCGTAAAATTGGTATTCTTTTTTTTATGGGTTTATCAAATGATTTAAAAGAACAAAAATTAATTGAAGAAGAAGAACGAATTTATGGTGACGTTGTTCAACGAGCATTTCTGGAAAATTACTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6648#0 AGTATAGATGTATATTTGTCTTGTAAAATAAGTCAATATAATTTTAAACAAATGGAAACA 60
consensus_6648#1 ------------------------------------------------------------
consensus_6648#0 AATATTATATTTAACAGTATAATAATATTAGTAACTGAACGTCTGATCTAATTTCACATT 120
consensus_6648#1 -------------------------------------TACGAGCCAAN-AATTTGGCACG 22
*** * ***** **
consensus_6648#0 AAGTAGATTGAAAGAAGCATATAA--ATTATTACGTAACTGTCTTTAAATTATTGATTAG 178
consensus_6648#1 AGGTTTATCAAGAATGGCCGACAACAATCCATAGGAAATTAGAGTTACAT-AATAAAAAT 81
* ** ** * * ** * ** ** ** * ** * *** ** * * * *
consensus_6648#0 TCAA--TAGGGTAATGTATATAATTTAATCAATCCCCATACTATGTGCAACAACTTCACG 236
consensus_6648#1 TCAAATTTTAATGATATAAGTAAAGTATTTAATTTATGCGCCAAAAATAAAGATGCTATA 141
**** * * ** ** *** ** * *** * * ** * *
consensus_6648#0 CCACATCTTTTGTACTGGAAGTGGATAGAATTCATTGTAAAATGATACTAAAAAGATACA 296
consensus_6648#1 CC-TATACT---TATTGAAAATAG-------TGATTTTATATTTAGTCAATCAACATATT 190
** ** * ** ** ** * * * *** ** * * * * * ** ***
consensus_6648#0 GTCTGCAAGTAAACCTTCTTCTTTTGCAGGTTTCAAGTTCAAATAACTATGTCCATCTTG 356
consensus_6648#1 GT-TATAAACAAAC-----GAATCTATGGATATTAATCGCTG-----TACATACACATCC 239
** * ** **** * * * * * ** * ** * ** *
consensus_6648#0 AAATCGCAACCTTGGTATACCTAGATTTTGGGCTAAAATTCCTGTTACATAGACATCATC 416
consensus_6648#1 AAATCATCGTCA----AAAAAGAGATTT--------AATTCGTGGAACATGGGGATCATT 287
***** * * * ****** ***** ** **** * *****
consensus_6648#0 TATCCATATAGGGGGTTGAAACATTGAACACCAATATAAGTAGGGTGCCAGTTTCATATC 476
consensus_6648#1 AAGACGTGTTAATAATCGTAAAATTGG-TATTCTTTTTTTTATGGGTTTA---TCAAATG 343
* * * * * * ** **** * * * ** ** * *** **
consensus_6648#0 CATAATATATCCAAAACCTTCGCAATATGTTGGAAATATTTTTTCGGGATATTCTTTATC 536
consensus_6648#1 ATTTAAAAGAACAAAAATTAATTGAAGAAGAAGAACGAATTTATGGTGACATTGTTCAAC 403
* * * ***** * * *** * *** * * ** *** ** * *
consensus_6648#0 ACTTATTTCCCACTTGGAATGTTTGATACTGTTTGGTCGTACAACCTTAATATTACTTGT 596
consensus_6648#1 GAGCATTTC-----TGGAAAATT-ACTA-------------------------------- 425
***** ***** ** **
consensus_6648#0 AGCAGTACAGTAGAATA 613
consensus_6648#1 -----------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||