These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6649#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 884 fasta sequence [CATCTTTTTTAGTTTTTGGCAAGATGTATTATTCAGTATTCTAGAATGGAGTCATGTTATAAACATGACAAGTGGATATTCAGCAACACTAATTGCTGGTATCTACAAAAATTTATTAATATGCATTGAACTGGTTATTGTTTCAATTGCACTACGTTATGCATTTCCCTATAGTATTTATGTGTTACACAATCCACCTCGCCTTGTTTTTGACTTACCTTCAAACGATTCTTTCTGGTCTAATGATGAATTTCTATTTGCTACAAAACCGTCTGTGGGTTTTAAATCATCAAAAGACTCAACGGTATTTAATTCAGTCAAAGACAATTCATCACATTTCACACCGGCAACATTTGTCGGTTATGCACCATCAACAAAATATGCTGAACCATTACCATGGGATATTGTTGATCCACAATTGAACAATGGTGGGTTTGAAGAAACATGGAATACTAAAAATTCAAGTGTGATTCCAAGTATATCTGCAAGTATCAAGGCAACTATTGATCCTACAGATATACTTGTTGATGCAGTTCACAATTTTCATCCTACTTATCGTCATTATACTCAGACTCANATGGATGAAGATAGTTAATGAATCATANAATTCCAAATGTGTCCAAATGTATCTACGTCATTTCTTCCTGAAATAAATATTCGACCATAATAATACTCACACTATGTACATTTCATCATATATATTATTCAGGTTAGAATGTTCGATTCTTTTTGTATTTCTGTGAAGAAAACAACATAACTAATCTTTTATATTCACATAATACCTGTCTTTCGCTGTTCCTCATAAGGAACAATTTCTTCTTTTTTATTTGTATAATAGATATTACGTTTGATTTAAAACTATTGAAATAAAGGTATTTTCAGAT] [+] EMBL CD078967 [CATCTTTTTTAGTTTTTGGCAAGATGTATTATTCAGTATTCTAGAATGGAGTCATGTTATAAACATGACAAGTGGATATTCAGCAACACTAATTGCTGGTATCTACAAAAATTTATTAATATGCATTGAACTGGTTATTGTTTCAATTGCACTACGTTATGCATTTCCCTATAGTATTTATGTGTTACACAATCCACCTCGCCTTGTTTTTGACTTACCTTCAAACGATTCTTTCTGGTCTAATGATGAATTTCTATTTGCTACAAAACCGTCTGTGGGTTTTAAATCATCAAAAGACTCAACGGTATTTAATTCAGTCAAAGACAATTCATCACATTTCACACCGGCAACATTTGTCGGTTATGCACCATCAACAAAATATGCTGAACCATTACCATGGGATATTGTTGATCCACAATTGAACAATGGTGGGTTTGAAGAAACATGGAATACTAAAAATTCAAGTGTGATTCCAAGTATATCTGCAAGTATCAAGGCAACTATTGATCCTACAGATATACTTGTTGATGCAGTTCACAATTTTCATCCTACTTATCGTCATTATACTCAGACTCANATGGATGAAGATAGTTAATGAATCATANAATTCCAAATGTGTCCAAATGTATCTAC ] [-] EMBL CD073420 [ GGTATTTAATTCAGTCAAAGACAATTCATCACATTTCACACCGGCAACATTTGTCGGTTATGCACCATCAACAAAATATGCTGAACCATTACCATGGGATATTGTTGATCCACAATTGAACAATGGTGGGTTTGAAGAAACATGGAATACTAAAAATTCAAGTGTGATTCCAAGTATATCTGCAAGTATCAAGGCAACTATTGATCCTACAGATATACTTGTTGATGCAGTTCACAATTTTCATCCTACTTATCGTCATTATACTCAGACTCAAATGGATGAAGATAGTTAATGAATCATAAAATTCCAAATGTGTCCAAATGTATCTACGTCATTTCTTCCTGAAATAAATATTCGACCATAATAATACTCACACTATGTACATTTCATCATATATATTATTCAGGTTAGAATGTTCGATTCTTTTTGTATTTCTGTGAAGAAAACAACATAACTAATCTTTTATATTCACATAATACCTGTCTTTCGCTGTTCCTCATAAGGAACAATTTCTTCTTTTTTATTTGTATAATAGATATTACGTTTGATTTAAAACTATTGAAATAAAGGTATTTTCAGAT] [+] EMBL SMAA18484 [ ACCATAATAATACTCACACTATGTACATTTCATCATATATATTATTCAGGTTAGAATGTTCGATTCTTTTTGTATTTCTGTGAAGAAAACAACATAACTAATCTTTTATATTCACATAATACCTGTCTTTCGCTGTTCCTCATAAGGAACAATTTCTTCTTTTTTATTTGTATAATAGATATTACGTTTGATTTAAAACTATTGAAATAAAGGTAT ] consensusID : consensus_6649#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 506 fasta sequence [TTTCTACGGTTTTGCAATAGCTACTCTTCAGTATACTTTGATCAAACCAATTACTTCATTCACGTCTATGAAACTAATGGCTACAAAGAAGTATATCGTTGGTGATTTTGGTCCTACATCAGGCTATCTGTATTTATTCTTGATCAACAATGCCACCGTAACTCTTGCTGTTTATGGTTAATTGTTGTTTAATTTTGCAACTCGGGAGCAATTGAAACCATTCTCACCATTACTCAAATTTGCTACTATTAAATCGATCATCTTTTTTAGTTTTTGGCAAGATGTATTATTCAGTATTCTAGAATGGAGTCATGTTATAAACATGACAAGTGGATATTCAGCAACACTAATTGCTGGTATCTACAAAAATTTATTAATATGCATTGAACTGGTTATTGTTTCAATTGCACTACGTTATGCATTTCCCTATAGTATTTATGTGTTACACAATCCACCTCGCCTTGTTTTTGACTTACCTTCCATCTCNAGTGATGATCGAATCCCCG] [-] EMBL CD178316 [TTTCTACGGTTTTGCAATAGCTACTCTTCAGTATACTTTGATCAAACCAATTACTTCATTCACGTCTATGAAACTAATGGCTACAAAGAAGTATATCGTTGGTGATTTTGGTCCTACATCAGGCTATCTGTATTTATTCTTGATCAACAATGCCACCGTAACTCTTGCTGTTTATGGTTAATTGTTGTTTAATTTTGCAACTCGGGAGCAATTGAAACCATTCTCACCATTACTCAAATTTGCTACTATTAAATCGATCATCTTTTTTAGTTTTTGGCAAGATGTATTATTCAGTATTCTAGAATGGAGTCATGTTATAAACATGACAAGTGGATATTCAGCAACACTAATTGCTGGTATCTACAAAAATTTATTAATATGCATTGAACTGGTTATTGTTTCAATTGCACTACGTTATGCATTTCCCTATAGTATTTATGTGTTACACAATCCACCTCGCCTTGTTTTTGACTTACCTTCCATCTCNAGTGATGATCGAATCCCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6649#0 CATCTTTTTTAGTTTTTGGCAAGATGTATTATTCAGTATTCTAGAATGGAGTCATGTTAT 60 consensus_6649#1 -------------------------------------------------------TTTCT 5 ** * consensus_6649#0 AAACATGACAAGTGGATATTCAGCAACACTAATTGCTGGTATCTACAAAAATTTATTAAT 120 consensus_6649#1 ACGGTTTTGCAATAGCTACTCTTCAGTATACTTTGATCAAACCAATTA--CTTCATTCAC 63 * * * * * ** ** ** * *** * * * * * ** *** * consensus_6649#0 ATGCATTGAACTGGTTATTGTTTCAATTGCACTACGTTATGCATTTCCCTATAGTATTTA 180 consensus_6649#1 GTCTATGAAACTA---ATGGCTACAAA-GAAGTATATCGTTGGTG----------ATTTT 109 * ** **** ** * * *** * * ** * * * **** consensus_6649#0 TGTGTTACA-CAATCCACCTCGCCTTGTTTTTGACTTACCTTCAAACGATTCTTTCTGGT 239 consensus_6649#1 GGTCCTACATCAGGCTATCTGTATTTATTCTTGATCAACAATGCCACCGTAACTCTTGCT 169 ** **** ** * * ** ** ** **** ** * ** * * ** * consensus_6649#0 -CTAATGATGAATTTCTATTTGCTACAAAACCGTCTGTGGGTTTTAAATCATCAAAAGAC 298 consensus_6649#1 GTTTATGGTTAATTGTTGTTTAATTTTGCAACTCGGGAGCAATTGAAACCATTCTCACCA 229 * *** * **** * *** * * * * * ** *** *** * consensus_6649#0 TCAACGGTATTTAATTCAGTCAAAGACAATTCATCACATTTCACACC-GGCAACATTTGT 357 consensus_6649#1 TTACTCAAATTTGCTACTATTAAA--TCGATCATCTTTTTTAGTTTTTGGCAAGATGTAT 287 * * **** * * * *** ***** *** ***** ** * * consensus_6649#0 CGGTTATGCACCATCAACAAAATATGCTGAACCATTACCATGGGATATTGTTGATCCACA 417 consensus_6649#1 ----TATTCAGTATTCTAGAATGGAGTCATGTTATAAACATGACAAGTGGATATTCAGCA 343 *** ** ** ** * ** * **** * * * * ** ** consensus_6649#0 ATTGAACAATGGTGGGTTTGAAGAAACATGGAATACTAAAAATTCAAGTGTGATTCCAAG 477 consensus_6649#1 AC--ACTAATTGCTGGTATCTACAAAAATTTATTAATATGCATTGAACTG--GTTATTGT 399 * * *** * *** * * *** ** * ** ** *** ** ** ** consensus_6649#0 TATATCTGCAAGTATCAAGGCAACTATTGATCCTACAGATATACTTGTTGATGCAGTTCA 537 consensus_6649#1 TTCAATTGCACTACGTTATGCATTTCCCTATAGTATTTATGTGTTACACAATCCACCTCG 459 * * **** * *** * ** ** ** * * ** ** ** consensus_6649#0 CA--ATTTTCATCCTACTTATCGTCATTATACTCAGACTCANATGGATGAAGATAGTTAA 595 consensus_6649#1 CCTTGTTTTTGACTTACCTTCCATC--TCNAGTGATGATCGAATCCCCG----------- 506 * **** * *** * * ** * * * * ** ** * consensus_6649#0 TGAATCATANAATTCCAAATGTGTCCAAATGTATCTACGTCATTTCTTCCTGAAATAAAT 655 consensus_6649#1 ------------------------------------------------------------ consensus_6649#0 ATTCGACCATAATAATACTCACACTATGTACATTTCATCATATATATTATTCAGGTTAGA 715 consensus_6649#1 ------------------------------------------------------------ consensus_6649#0 ATGTTCGATTCTTTTTGTATTTCTGTGAAGAAAACAACATAACTAATCTTTTATATTCAC 775 consensus_6649#1 ------------------------------------------------------------ consensus_6649#0 ATAATACCTGTCTTTCGCTGTTCCTCATAAGGAACAATTTCTTCTTTTTTATTTGTATAA 835 consensus_6649#1 ------------------------------------------------------------ consensus_6649#0 TAGATATTACGTTTGATTTAAAACTATTGAAATAAAGGTATTTTCAGAT 884 consensus_6649#1 ------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||