cluster # 6651

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Schistosoma mansoni
cluster # 6651 cluster # 6651 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6651#0 length = 949 sequences # 3

consensus_6651#1 length = 276 sequences # 1

consensusID : consensus_6651#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 949
fasta sequence

                              [TGAGATTCACATAAGTTACATTGTCCATCTTCTGCATTGACATTCCCAGTGACATGAATTTCACTGATAGGATAATATTGGTCGAAACACGGATGACTCGACCTGTCACACCCACTACTTACACTACTAGGAACAAAACAACAGGCAGTTTGGTTGGTGTCCTTCATAACAACTTTCCTGACTATGTCTGAGTAAACATGACTCGTTGTAACACTTGCATCATCGCCATGCGAACTTGTAGATTCATCCACTAGGTGATCAGTCTTATTTCTATCCACCCTTACTTCCCGTGATCGATCAACTTGATTTTGAGAAGGCATCTTCTGATGATGAGAGCAATGATATGAATATAAATTGAATAAATAGACAAATTCTGAATTTTCATCATTGGATTTAACGTTTTTCCCTGATAGACTTGGATTTACAACTCCAGCATTGTCAATATGAGTGTCTCTGGAATGACTAGAAAAGTTATATTTTCCATTAAACAAACGATTTAATGAACGACTGCGTCGCCTTTGTGGTGATGGTGTATTACTGTTCGATCTTTTGATTTCTCAAGTTAGAGTTTTAGTAGTATTATTTTCTGATATATCAACCAAAACAGCAGATATGTTCGTATCTGAGCTTGATGCGTCTCCAAATGAGACATTATCCACGGATAATTCTACTTCCACAGTAGCACCTGGAACATTATGCGGTAAACGATCAATTATTTTGAGGAATGGATGGGAGTTCAAC-TTTTTTGTAAGAATATACGAGTACACCCAACTAAAATATTCAGATTATTAGAGGTTATTGAGACGATATCACAATTACATGAACCCTTTGAAATACAGTTATCTGACTCAGGATGCTGAAGTTTATTTTCCCCAACTAACANATTTTCAGAACACTTTTCANACANACTATTTGGGAAGGCCATAGAATCAGCAGCACCAAGTATAAA]

[+] EMBL CD163616             [TGAGATTCACATAAGTTACATTGTCCATCTTCTGCATTGACATTCCCAGTGACATGAATTTCACTGATAGGATAATATTGGTCGAAACACGGATGACTCGACCTGTCACACCCACTACTTACACTACTAGGAACAAAACAACAGGCAGTTTGGTTGGTGTCCTTCATAACAACTTTCCTGACTATGTCTGAGTAAACATGACTCGTTGTAACACTTGCATCATCGCCATGCGAACTTGTAGATTCATCCACTAGGTGATCAGTCTTATTTCTATCCACCCTTACTTCCCGTGATCGATCAACTTGATTTTGAGAAGGCATCTTCTGATGATGAGAGCAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CD151732             [                                                                                                                                                                                                                                                                                          ACTTCCCGTGATCGATCAACTTGATTTTGAGAAGGCATCTTCTGATGATGAGAGCGATGATATGAATATAAATTGAATAAATAGACAAATTCTGAATTTTCATCATTGGATTTAACGTTTTTCCCTGATAGACTTGGATTTACAACTCCAGCATTGTCAATATGAGTGTCTCTGGAATGACTAGAAAAGTTATATTTTCCATTAAACAAACGATTTAATGAACGACTGCGTCGCCTTTGTGGTGATGGTGTATTACTGTTCGATCTTTTGATTTCTCAAGTTAGAGTTTTAGTAGTATTATTTTCTGATATATCAACCAAAACAGCAGATATGTTCGTATCTGAGCTTGATGCGTCTCCAAATGAGACATTATCCACGGATAATTCTACTTCCACAGTAGCACCTGGAACATTATGCGGTAAACGATCAATTATTTTGAGGAATGGATGGGAGTTCAAC TTTTTTGTAAGAATATACGAGTACACCCAACTAAAATATTCAGATTATTAGAGGTTATTGAGACGATATCACAATTACATGAACCCTTTGAAATACAGTTATCTGACTCAGGATGCTGAAGTTT                                                                                    ]
[+] EMBL CD178918             [                                                                                                                                                                                                                                                                                                                                      ATGATGAGAGCAATGATATGAATATAAATTGAATAAATAGACAAATTCTGAATTTTCATCATTGGATTTAACGTTTTTCCCTGATAGACTTGGATTTACAACTCCAGCATTGTCAATATGAGTGTCTCTGGAATGACTAGAAAAGTTATATTTTCCATTAAACAAACGATTTAATGAACGACTGCGTCGCCTTTGTGGTGATGGTGTATTACTGTTCGATCTTTTGATTTCTCGAGTTAGAGTTTTAGTAGTATTATTTTCTGATATATCAACCAAAACAGCAGATATGTTCGTATCTGAGCTTGATGCGTCTCCAAATGAGACATTATCCACGGATAATTCTACTTCCACAGTAGCACCTGGAACATTATGCGGTAAACGATCAATTATTTTGAGGAATGGATGGGAGTTCAACTTTTTTTGTAAGAATATACGAGTACACCCAACTAAAATATTCAGATTATTAGAGGTTATTGAGACGATATCACAATTACATGAACCCTTTGAAATACAGTTATCTGACTCAGGATGCTGAAGTTTATTTTCCCCAACTAACANATTTTCAGAACACTTTTCANACANACTATTTGGGAAGGCCATAGAATCAGCAGCACCAAGTATAAA]




>consensus_6651#0
TGAGATTCACATAAGTTACATTGTCCATCTTCTGCATTGACATTCCCAGTGACATGAATT
TCACTGATAGGATAATATTGGTCGAAACACGGATGACTCGACCTGTCACACCCACTACTT
ACACTACTAGGAACAAAACAACAGGCAGTTTGGTTGGTGTCCTTCATAACAACTTTCCTG
ACTATGTCTGAGTAAACATGACTCGTTGTAACACTTGCATCATCGCCATGCGAACTTGTA
GATTCATCCACTAGGTGATCAGTCTTATTTCTATCCACCCTTACTTCCCGTGATCGATCA
ACTTGATTTTGAGAAGGCATCTTCTGATGATGAGAGCAATGATATGAATATAAATTGAAT
AAATAGACAAATTCTGAATTTTCATCATTGGATTTAACGTTTTTCCCTGATAGACTTGGA
TTTACAACTCCAGCATTGTCAATATGAGTGTCTCTGGAATGACTAGAAAAGTTATATTTT
CCATTAAACAAACGATTTAATGAACGACTGCGTCGCCTTTGTGGTGATGGTGTATTACTG
TTCGATCTTTTGATTTCTCAAGTTAGAGTTTTAGTAGTATTATTTTCTGATATATCAACC
AAAACAGCAGATATGTTCGTATCTGAGCTTGATGCGTCTCCAAATGAGACATTATCCACG
GATAATTCTACTTCCACAGTAGCACCTGGAACATTATGCGGTAAACGATCAATTATTTTG
AGGAATGGATGGGAGTTCAACTTTTTTGTAAGAATATACGAGTACACCCAACTAAAATAT
TCAGATTATTAGAGGTTATTGAGACGATATCACAATTACATGAACCCTTTGAAATACAGT
TATCTGACTCAGGATGCTGAAGTTTATTTTCCCCAACTAACANATTTTCAGAACACTTTT
CANACANACTATTTGGGAAGGCCATAGAATCAGCAGCACCAAGTATAAA

consensusID : consensus_6651#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 276
fasta sequence

                              [GGGTGTGACAGGTCAAGTCATCCGAGTTTCGACCAATATTATCCTATCAGTGAAATGCATGTCACTGGGAATGTCAAGTAAGTTACCCATCTACTTATAAGCATATTCGAGCGAAGTTTACTCTATTTTCTCATTAAGACAATCCACTGTGTAGAATTAAAGACATCTACCTACGTAGTCATTGTATCAAATTTCAATGCGTATGCTTCATTCGCTTGATGGTTGAACGAACATAATGTCAACGATTCTAGTAAAATTAAGATTTAATTAGCACTT]

[+] EMBL CD059771             [GGGTGTGACAGGTCAAGTCATCCGAGTTTCGACCAATATTATCCTATCAGTGAAATGCATGTCACTGGGAATGTCAAGTAAGTTACCCATCTACTTATAAGCATATTCGAGCGAAGTTTACTCTATTTTCTCATTAAGACAATCCACTGTGTAGAATTAAAGACATCTACCTACGTAGTCATTGTATCAAATTTCAATGCGTATGCTTCATTCGCTTGATGGTTGAACGAACATAATGTCAACGATTCTAGTAAAATTAAGATTTAATTAGCACTT]




>consensus_6651#1
GGGTGTGACAGGTCAAGTCATCCGAGTTTCGACCAATATTATCCTATCAGTGAAATGCAT
GTCACTGGGAATGTCAAGTAAGTTACCCATCTACTTATAAGCATATTCGAGCGAAGTTTA
CTCTATTTTCTCATTAAGACAATCCACTGTGTAGAATTAAAGACATCTACCTACGTAGTC
ATTGTATCAAATTTCAATGCGTATGCTTCATTCGCTTGATGGTTGAACGAACATAATGTC
AACGATTCTAGTAAAATTAAGATTTAATTAGCACTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6651#0      TGAGATTCACATAAGTTACATTGTCCATCTTCTGCATTGACATTCCCAGTGACATGAATT 60
consensus_6651#1      --------------------------------GGGTGTGACAGGTCAAGTCATCCGAGTT 28
                                                       *   *****   * *** *   ** **

consensus_6651#0      TC-ACTGATAGGATAATATTGGTCGAAACACGGATGACTCGACCTGTCACACCCACTACT 119
consensus_6651#1      TCGACCAATATTATCCTATCAGT-GAAATGCATGTCACTGGGAATGTCAAGTAAGTTACC 87
                      ** **  ***  **  ***  ** ****  *   * *** *   *****       *** 

consensus_6651#0      TACACTACTAGGAACAAAACAACAGGCAGTTTGGTTGGTGTCCTTCATAACAACTTTCCT 179
consensus_6651#1      CATCTACTTATAAGCATATTCGAGCGAAGTTTACTCTATTTTCT-CATTAAGACAATCC- 145
                       *      **  * ** *       * *****  *   * * ** *** *  **  *** 

consensus_6651#0      GACTATGTCTGAGTAAACATGACTCGTTGTAACACTTGCATCATCGCCATGCGAACTTGT 239
consensus_6651#1      -ACTGTGTAGAATTAAAGACATCT---------ACCTACGTAGTCATTGTATCAAATTTC 195
                       *** ***   * **** *   **         ** * * *  **    *   ** **  

consensus_6651#0      AGATTCATCCACTAGGTGATCAGTCTTATTTCTATCCACCCTTACTTCCCGTGATC--GA 297
consensus_6651#1      A-ATGCGTATGCT---TCATTCGCTTGATGGTTGAACGAACATAATGTCAACGATTCTAG 251
                      * ** * *   **   * **  *  * **   *   *   * ** *  *   ***     

consensus_6651#0      TCAACTTGATTTTGAGAAGGCATCTTCTGATGATGAGAGCAATGATATGAATATAAATTG 357
consensus_6651#1      TAAAATTAAGATTTAATTAGCACTT----------------------------------- 276
                      * ** ** *  ** *    ***  *                                   

consensus_6651#0      AATAAATAGACAAATTCTGAATTTTCATCATTGGATTTAACGTTTTTCCCTGATAGACTT 417
consensus_6651#1      ------------------------------------------------------------
                                                                                  

consensus_6651#0      GGATTTACAACTCCAGCATTGTCAATATGAGTGTCTCTGGAATGACTAGAAAAGTTATAT 477
consensus_6651#1      ------------------------------------------------------------
                                                                                  

consensus_6651#0      TTTCCATTAAACAAACGATTTAATGAACGACTGCGTCGCCTTTGTGGTGATGGTGTATTA 537
consensus_6651#1      ------------------------------------------------------------
                                                                                  

consensus_6651#0      CTGTTCGATCTTTTGATTTCTCAAGTTAGAGTTTTAGTAGTATTATTTTCTGATATATCA 597
consensus_6651#1      ------------------------------------------------------------
                                                                                  

consensus_6651#0      ACCAAAACAGCAGATATGTTCGTATCTGAGCTTGATGCGTCTCCAAATGAGACATTATCC 657
consensus_6651#1      ------------------------------------------------------------
                                                                                  

consensus_6651#0      ACGGATAATTCTACTTCCACAGTAGCACCTGGAACATTATGCGGTAAACGATCAATTATT 717
consensus_6651#1      ------------------------------------------------------------
                                                                                  

consensus_6651#0      TTGAGGAATGGATGGGAGTTCAACTTTTTTGTAAGAATATACGAGTACACCCAACTAAAA 777
consensus_6651#1      ------------------------------------------------------------
                                                                                  

consensus_6651#0      TATTCAGATTATTAGAGGTTATTGAGACGATATCACAATTACATGAACCCTTTGAAATAC 837
consensus_6651#1      ------------------------------------------------------------
                                                                                  

consensus_6651#0      AGTTATCTGACTCAGGATGCTGAAGTTTATTTTCCCCAACTAACANATTTTCAGAACACT 897
consensus_6651#1      ------------------------------------------------------------
                                                                                  

consensus_6651#0      TTTCANACANACTATTTGGGAAGGCCATAGAATCAGCAGCACCAAGTATAAA 949
consensus_6651#1      ----------------------------------------------------