These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6651#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 949 fasta sequence [TGAGATTCACATAAGTTACATTGTCCATCTTCTGCATTGACATTCCCAGTGACATGAATTTCACTGATAGGATAATATTGGTCGAAACACGGATGACTCGACCTGTCACACCCACTACTTACACTACTAGGAACAAAACAACAGGCAGTTTGGTTGGTGTCCTTCATAACAACTTTCCTGACTATGTCTGAGTAAACATGACTCGTTGTAACACTTGCATCATCGCCATGCGAACTTGTAGATTCATCCACTAGGTGATCAGTCTTATTTCTATCCACCCTTACTTCCCGTGATCGATCAACTTGATTTTGAGAAGGCATCTTCTGATGATGAGAGCAATGATATGAATATAAATTGAATAAATAGACAAATTCTGAATTTTCATCATTGGATTTAACGTTTTTCCCTGATAGACTTGGATTTACAACTCCAGCATTGTCAATATGAGTGTCTCTGGAATGACTAGAAAAGTTATATTTTCCATTAAACAAACGATTTAATGAACGACTGCGTCGCCTTTGTGGTGATGGTGTATTACTGTTCGATCTTTTGATTTCTCAAGTTAGAGTTTTAGTAGTATTATTTTCTGATATATCAACCAAAACAGCAGATATGTTCGTATCTGAGCTTGATGCGTCTCCAAATGAGACATTATCCACGGATAATTCTACTTCCACAGTAGCACCTGGAACATTATGCGGTAAACGATCAATTATTTTGAGGAATGGATGGGAGTTCAAC-TTTTTTGTAAGAATATACGAGTACACCCAACTAAAATATTCAGATTATTAGAGGTTATTGAGACGATATCACAATTACATGAACCCTTTGAAATACAGTTATCTGACTCAGGATGCTGAAGTTTATTTTCCCCAACTAACANATTTTCAGAACACTTTTCANACANACTATTTGGGAAGGCCATAGAATCAGCAGCACCAAGTATAAA] [+] EMBL CD163616 [TGAGATTCACATAAGTTACATTGTCCATCTTCTGCATTGACATTCCCAGTGACATGAATTTCACTGATAGGATAATATTGGTCGAAACACGGATGACTCGACCTGTCACACCCACTACTTACACTACTAGGAACAAAACAACAGGCAGTTTGGTTGGTGTCCTTCATAACAACTTTCCTGACTATGTCTGAGTAAACATGACTCGTTGTAACACTTGCATCATCGCCATGCGAACTTGTAGATTCATCCACTAGGTGATCAGTCTTATTTCTATCCACCCTTACTTCCCGTGATCGATCAACTTGATTTTGAGAAGGCATCTTCTGATGATGAGAGCAAT ] [-] EMBL CD151732 [ ACTTCCCGTGATCGATCAACTTGATTTTGAGAAGGCATCTTCTGATGATGAGAGCGATGATATGAATATAAATTGAATAAATAGACAAATTCTGAATTTTCATCATTGGATTTAACGTTTTTCCCTGATAGACTTGGATTTACAACTCCAGCATTGTCAATATGAGTGTCTCTGGAATGACTAGAAAAGTTATATTTTCCATTAAACAAACGATTTAATGAACGACTGCGTCGCCTTTGTGGTGATGGTGTATTACTGTTCGATCTTTTGATTTCTCAAGTTAGAGTTTTAGTAGTATTATTTTCTGATATATCAACCAAAACAGCAGATATGTTCGTATCTGAGCTTGATGCGTCTCCAAATGAGACATTATCCACGGATAATTCTACTTCCACAGTAGCACCTGGAACATTATGCGGTAAACGATCAATTATTTTGAGGAATGGATGGGAGTTCAAC TTTTTTGTAAGAATATACGAGTACACCCAACTAAAATATTCAGATTATTAGAGGTTATTGAGACGATATCACAATTACATGAACCCTTTGAAATACAGTTATCTGACTCAGGATGCTGAAGTTT ] [+] EMBL CD178918 [ ATGATGAGAGCAATGATATGAATATAAATTGAATAAATAGACAAATTCTGAATTTTCATCATTGGATTTAACGTTTTTCCCTGATAGACTTGGATTTACAACTCCAGCATTGTCAATATGAGTGTCTCTGGAATGACTAGAAAAGTTATATTTTCCATTAAACAAACGATTTAATGAACGACTGCGTCGCCTTTGTGGTGATGGTGTATTACTGTTCGATCTTTTGATTTCTCGAGTTAGAGTTTTAGTAGTATTATTTTCTGATATATCAACCAAAACAGCAGATATGTTCGTATCTGAGCTTGATGCGTCTCCAAATGAGACATTATCCACGGATAATTCTACTTCCACAGTAGCACCTGGAACATTATGCGGTAAACGATCAATTATTTTGAGGAATGGATGGGAGTTCAACTTTTTTTGTAAGAATATACGAGTACACCCAACTAAAATATTCAGATTATTAGAGGTTATTGAGACGATATCACAATTACATGAACCCTTTGAAATACAGTTATCTGACTCAGGATGCTGAAGTTTATTTTCCCCAACTAACANATTTTCAGAACACTTTTCANACANACTATTTGGGAAGGCCATAGAATCAGCAGCACCAAGTATAAA] consensusID : consensus_6651#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 276 fasta sequence [GGGTGTGACAGGTCAAGTCATCCGAGTTTCGACCAATATTATCCTATCAGTGAAATGCATGTCACTGGGAATGTCAAGTAAGTTACCCATCTACTTATAAGCATATTCGAGCGAAGTTTACTCTATTTTCTCATTAAGACAATCCACTGTGTAGAATTAAAGACATCTACCTACGTAGTCATTGTATCAAATTTCAATGCGTATGCTTCATTCGCTTGATGGTTGAACGAACATAATGTCAACGATTCTAGTAAAATTAAGATTTAATTAGCACTT] [+] EMBL CD059771 [GGGTGTGACAGGTCAAGTCATCCGAGTTTCGACCAATATTATCCTATCAGTGAAATGCATGTCACTGGGAATGTCAAGTAAGTTACCCATCTACTTATAAGCATATTCGAGCGAAGTTTACTCTATTTTCTCATTAAGACAATCCACTGTGTAGAATTAAAGACATCTACCTACGTAGTCATTGTATCAAATTTCAATGCGTATGCTTCATTCGCTTGATGGTTGAACGAACATAATGTCAACGATTCTAGTAAAATTAAGATTTAATTAGCACTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6651#0 TGAGATTCACATAAGTTACATTGTCCATCTTCTGCATTGACATTCCCAGTGACATGAATT 60 consensus_6651#1 --------------------------------GGGTGTGACAGGTCAAGTCATCCGAGTT 28 * ***** * *** * ** ** consensus_6651#0 TC-ACTGATAGGATAATATTGGTCGAAACACGGATGACTCGACCTGTCACACCCACTACT 119 consensus_6651#1 TCGACCAATATTATCCTATCAGT-GAAATGCATGTCACTGGGAATGTCAAGTAAGTTACC 87 ** ** *** ** *** ** **** * * *** * ***** *** consensus_6651#0 TACACTACTAGGAACAAAACAACAGGCAGTTTGGTTGGTGTCCTTCATAACAACTTTCCT 179 consensus_6651#1 CATCTACTTATAAGCATATTCGAGCGAAGTTTACTCTATTTTCT-CATTAAGACAATCC- 145 * ** * ** * * ***** * * * ** *** * ** *** consensus_6651#0 GACTATGTCTGAGTAAACATGACTCGTTGTAACACTTGCATCATCGCCATGCGAACTTGT 239 consensus_6651#1 -ACTGTGTAGAATTAAAGACATCT---------ACCTACGTAGTCATTGTATCAAATTTC 195 *** *** * **** * ** ** * * * ** * ** ** consensus_6651#0 AGATTCATCCACTAGGTGATCAGTCTTATTTCTATCCACCCTTACTTCCCGTGATC--GA 297 consensus_6651#1 A-ATGCGTATGCT---TCATTCGCTTGATGGTTGAACGAACATAATGTCAACGATTCTAG 251 * ** * * ** * ** * * ** * * * ** * * *** consensus_6651#0 TCAACTTGATTTTGAGAAGGCATCTTCTGATGATGAGAGCAATGATATGAATATAAATTG 357 consensus_6651#1 TAAAATTAAGATTTAATTAGCACTT----------------------------------- 276 * ** ** * ** * *** * consensus_6651#0 AATAAATAGACAAATTCTGAATTTTCATCATTGGATTTAACGTTTTTCCCTGATAGACTT 417 consensus_6651#1 ------------------------------------------------------------ consensus_6651#0 GGATTTACAACTCCAGCATTGTCAATATGAGTGTCTCTGGAATGACTAGAAAAGTTATAT 477 consensus_6651#1 ------------------------------------------------------------ consensus_6651#0 TTTCCATTAAACAAACGATTTAATGAACGACTGCGTCGCCTTTGTGGTGATGGTGTATTA 537 consensus_6651#1 ------------------------------------------------------------ consensus_6651#0 CTGTTCGATCTTTTGATTTCTCAAGTTAGAGTTTTAGTAGTATTATTTTCTGATATATCA 597 consensus_6651#1 ------------------------------------------------------------ consensus_6651#0 ACCAAAACAGCAGATATGTTCGTATCTGAGCTTGATGCGTCTCCAAATGAGACATTATCC 657 consensus_6651#1 ------------------------------------------------------------ consensus_6651#0 ACGGATAATTCTACTTCCACAGTAGCACCTGGAACATTATGCGGTAAACGATCAATTATT 717 consensus_6651#1 ------------------------------------------------------------ consensus_6651#0 TTGAGGAATGGATGGGAGTTCAACTTTTTTGTAAGAATATACGAGTACACCCAACTAAAA 777 consensus_6651#1 ------------------------------------------------------------ consensus_6651#0 TATTCAGATTATTAGAGGTTATTGAGACGATATCACAATTACATGAACCCTTTGAAATAC 837 consensus_6651#1 ------------------------------------------------------------ consensus_6651#0 AGTTATCTGACTCAGGATGCTGAAGTTTATTTTCCCCAACTAACANATTTTCAGAACACT 897 consensus_6651#1 ------------------------------------------------------------ consensus_6651#0 TTTCANACANACTATTTGGGAAGGCCATAGAATCAGCAGCACCAAGTATAAA 949 consensus_6651#1 ---------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||