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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6658#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 616 fasta sequence
[TTACCTTATCGTTGGATACTTCCCTATCAAGGTTCNNNCACGTGTACGTTTTTGTTCAGTATGTCATACTGATTTATCGACTGAGAAAAACAACTCACTCATTCGTAATAATCAACAACAATATCAGTGTGAAAAAGAGAATAGTCTATCTAGTGTTACTACTTGTGTGACTAATAATAAAGTCGGTGTCACCAATGAAACGACTGACAATTGTATAATTACACCAACCTATCTTGGTGATGTAAATATGATTAATGATGAATTAAATACTGAAAGTGATACAGATTCAGATACCACTGAGGATGAAAAAGTTGACAAATTCGTTTCATAGTTGATTTTATATATCTAGGCAATACTGTATATTTAAATATATCAAAATAATCTGAAACAAAAACGAATATATATTTACCTGATTCAAAAGTATGGAACCTCAATATTCTTCCCTTTACTTCCAATTCTATAGAATGTCAAACTACTAAGTATTTAATCAAGTTTTATCATGCGTTATTATCTCGTTGGTTTTTTTCTTGTTGTCTTCTTCTCAGATTACTCCTCACTTATCGATCTCCTTTTTATTCAATATTTTAATAATATACACTCTCCTCATTATAATTTG]
[-] EMBL CD059786 [TTACCTTATCGTTGGATACTTCCCTATCAAGGTTCNNNCACGTGTACGTTTTTGTTCAGTATGTCATACTGATTTATCGACTGAGAAAAACAACTCACTCATTCGTAATAATCAACAACAATATCAGTGTGAAAAAGAGAATAGTCTATCTAGTGTTACTACTTGTGTGACTAATAATAAAGTCGGTGTCACCAATGAAACGACTGACAATTGTATAATTACACCAACCTATCTTGGTGATGTAAATATGATTAATGATGAATTAAATACTGAAAGTGATACAGATTCAGATACCACTGAGGATGAAAAAGTTGACAAATTCGTTTCATAGTTGAT ]
[+] EMBL CD168896 [ ATCTAGTGTTACTACTTGTGTGACTAATAATAAAGTCGGTGTCACCAATGAAACGACTGACAATTGTATAATTACACCAACCTATCTTGGTGATGTAAATATGATTAATGATGAATTAAATACTGAAAGTGATACAGATTCAGATACCACTGAGGATGAAAAAGTTGACAAATTC ATTCATAGTTGATTTTATATATCTAGGCAATACTGTATATTTAAATATATCAAAATAATCTGAAACAAAAACGAATATATATTTACCTGATTCAAAAGTATGGAACCTCAATATTCTTCCCTTTACTTCCAATTCTATAGAATGTCAAACTACTAAGTATTTAATCAAGTTTTATCATGCGTTATTATCTCGTTGGTTTTTTTCTTGTTGTCTTCTTCTCAGATTACTCCTCACTTATCGATCTCCTTTTTATTCAATATTTTAATAATATACACTCTCCTCATTATAATTTG]
consensusID : consensus_6658#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 562 fasta sequence
[GATTCCAGACTCAGAAGCATCTCACTGTATGGTATGTGGTACTACTGAATTCAATCTTGTTCATCGAAGACATCATTGTCGACATTGTGGCAAAGTTGTTTGTGATAAATGTTCTACTTATCGTTGGATACTTCCCTATCAAGGTTCATCACGTGTACGTGTTTGTTCAGTATGTCATACTGATTTATCGACTGAGAAAAACAACTCACTCATTCGTAATAATCAACAACAATATCAGTGTGAAAAAGAGAATAGTCTATCTAGTGTTACTACTTGTGTGACTAATAATAAAGTCGGTGTCACCAATGAAACGACTGACAATTGTATAATTACACCAAGTAAGTTGTCTCAATAATAATGACGGCTAAATTCTTCTATTTATATACTTATGTATGTATTTACTGTGTTCATTTGTGCACTAATCAATGAAACTTTAAGTGTCTGCTTGCGTGTTAGTCCATGTCCCTAATAAAACTTACCAAGATGTTGAACACTGTCCAAGTTACTTTTATTTAATCAATACTTTTCAGAATCAACCCCCAGTGCAATATGGTGACCAAGC]
[+] EMBL CD157515 [GATTCCAGACTCAGAAGCATCTCACTGTATGGTATGTGGTACTACTGAATTCAATCTTGTTCATCGAAGACATCATTGTCGACATTGTGGCAAAGTTGTTTGTGATAAATGTTCTACTTATCGTTGGATACTTCCCTATCAAGGTTCATCACGTGTACGTGTTTGTTCAGTATGTCATACTGATTTATCGACTGAGAAAAACAACTCACTCATTCGTAATAATCAACAACAATATCAGTGTGAAAAAGAGAATAGTCTATCTAGTGTTACTACTTGTGTGACT ]
[+] EMBL CD096863 [ ATTCCAGACTCAGAAGCATCTCACTGTATGGTATGTGGTACTACTGAATTCAATCTTGTTCATCGAAGACATCATTGTCGACATTGTGGCAAAGTTGTTTGTGATAAATGTTCTACTTATCGTTGGATACTTCCCTATCAAGGTTCATCACGTGTACGTGTTTGTTCAGTATGTCATACTGATTTATCGACTGAGAAAAACAACTCACTCATTCGTAATAATCAACAACAATATCAGTGTGAAAAAGAGAATAGTCTATCTAGTGTTACTACTTGTGTGACTAATAATAAAGTCGGTGTCACCAATGAAACGACTGACAATTGTATAATTACACCAAGTAAGTTGTCTCAATAATAATGACGGCTAAATTCTTCTATTTATATACTTATGTATGTATTTACTGTGTTCATTTGTGCACTAATCAATGAAACTTTAAGTGTCTGCTTGCGTGTTAGTCCATGTCCCTAATAAAACTTACCAAGATGTTGAACACTGTCCAAGTTACTTTTATTTAATCAATACTTTTCAGAATCAACCCCCAGTGCAATATGGTGACCAAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6658#0 ------------------------------------------------------------
consensus_6658#1 GATTCCAGACTCAGAAGCATCTCACTGTATGGTATGTGGTACTACTGAATTCAATCTTGT 60
consensus_6658#0 ----------------------------------------------------TTACCTTA 8
consensus_6658#1 TCATCGAAGACATCATTGTCGACATTGTGGCAAAGTTGTTTGTGATAAATGTTCTACTTA 120
* ****
consensus_6658#0 TCGTTGGATACTTCCCTATCAAGGTTCNNNCACGTGTACGTTTTTGTTCAGTATGTCATA 68
consensus_6658#1 TCGTTGGATACTTCCCTATCAAGGTTCATC-ACGTGTACGTGTTTGTTCAGTATGTCATA 179
*************************** ********** ******************
consensus_6658#0 CTGATTTATCGACTGAGAAAAACAACTCACTCATTCGTAATAATCAACAACAATATCAGT 128
consensus_6658#1 CTGATTTATCGACTGAGAAAAACAACTCACTCATTCGTAATAATCAACAACAATATCAGT 239
************************************************************
consensus_6658#0 GTGAAAAAGAGAATAGTCTATCTAGTGTTACTACTTGTGTGACTAATAATAAAGTCGGTG 188
consensus_6658#1 GTGAAAAAGAGAATAGTCTATCTAGTGTTACTACTTGTGTGACTAATAATAAAGTCGGTG 299
************************************************************
consensus_6658#0 TCACCAATGAAACGACTGACAATTGTATAATTACACCAACCTATCTTGGTGATGTAAATA 248
consensus_6658#1 TCACCAATGAAACGACTGACAATTGTATAATTACACCAAG-TAAGTTGTCTCAATAATAA 358
*************************************** ** *** *** *
consensus_6658#0 TGATTAATGATGAATTAAATACTGAAAGTGATACAGATTCAGATACCACTGAGG-ATGAA 307
consensus_6658#1 TGACGGCTAAATTCTTCTATTTATATACTTATGTATGTATTTACTGTGTTCATTTGTGCA 418
*** * * ** ** * * * ** * * * * * ** *
consensus_6658#0 AAAGTTGACAAATTCGTTTCATAGTTGATTTTATATATCTAGGCAATACTGTATATTTAA 367
consensus_6658#1 CTAATCAATGAAACT-TTAAGTGTCTGCTTGCGTGT---TAGTCCATGTC-CCTAATAAA 473
* * * ** ** * ** ** * * *** * ** ** * **
consensus_6658#0 ATATATCAAAATAATCTGAAACAAAAACGAATATATATTTACCTGATTCAAAAGTATGGA 427
consensus_6658#1 ACTTACCAAGATGTT---GAACACTGTCCAAGTTACTTTTATTTAAT-CAATACTTTTCA 529
* ** *** ** * **** * ** ** **** * ** *** * * * *
consensus_6658#0 ACCTCAATATTCTTCCCTTTACTTCCAATTCTATAGAATGTCAAACTACTAAGTATTTAA 487
consensus_6658#1 GAATCAA--------------CCCCCAGTGCAATATGGTGACCAAGC------------- 562
**** * *** * * *** ** * **
consensus_6658#0 TCAAGTTTTATCATGCGTTATTATCTCGTTGGTTTTTTTCTTGTTGTCTTCTTCTCAGAT 547
consensus_6658#1 ------------------------------------------------------------
consensus_6658#0 TACTCCTCACTTATCGATCTCCTTTTTATTCAATATTTTAATAATATACACTCTCCTCAT 607
consensus_6658#1 ------------------------------------------------------------
consensus_6658#0 TATAATTTG 616
consensus_6658#1 ---------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||