These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6659#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1151 fasta sequence [GTCGTACCCGCTAATTCTGGTCTAGGCTTACTGTAGTTTTGATGTCCTGTGGTTAATATTCATGATCGGTGTACCTCTTTTCCAAGAAAAAATATATCTTCCATCACCAGTTCTACTGATATTTACCATTATTATTATTATTATTACTATTATTATTATTATTATCTCGCCTGTAAATTAACTTGATATCATATGACTCACTAAATTACCCTTACAAATATTGCACTCGTAAAGAATTGTAATCATTTGTCCCATTTAATTCTTCCACCTATACCTCGCTTTACAACATGTGGAGTTAGTCATCAATCATGATGTTTAGTTTCTTTATAACAAGTAGTAGCCTTGTATGGCTTATCATCCCTCTCTGTGCTTTTCCATATGGTAACTAGTATGATAAAGTAGACTAATCATCTGATTTCATTTGTTTTCTGTGTATTGTTACTAATGTAAATTGTAGGATATGCATTTACATGTTCTGTTTTTCTTTATACCTGTTTTTTTGCTTTTAGTATTAATATATATATATATATATATATATATATTACAAGAATGCGTTTGCATCTGCCCTCTTCATATTATGTACAAATACACACTTCTTTGTAAAAGACGATAAAATANAATACCATTGCAGTATGAAACTACGGTAGATAACCGGTTTTCTCACCCTTATTTTGTATTTTCAAAATCGCATACATACTAGAATTTATTCACATTGCTGTTTTATAATTACATTTAATTCAATCTATATGTATAGGTTGATATCTGTGTTATTTGAAGGTTTTTGTTTAATTAACCCGAGGCAATTATGGAGTGGAATTCTCAGAAATGCAAATAATGGAGCCAACCACAGCTCACAGAATATATACTTTTTAATGATCTCTACTTTTGCTTAATAATATTATATTTTGTTGTAGTATGTAGTTTTTTTATAAATGCCATCTTCCAGGTTCCAAGTAATCCTTTGTTTAGTCGATTTTTATTTTCTTCATCTTCCTCACTTGTTTTATTTTCTTGTTTGCTTCTGATCATCATTTCTTATTTATCGTTTGGTGCTTCCACCAAACAAGAAAGTGTTTACAGTTCGCCCCACTGTCCTCTTCGCAATTGCTTTCAATACATAACCTGACTAGCCGTTAAATAAACAATTTTTG] [+] EMBL CD079362 [GTCGTACCCGCTAATTCTGGTCTAGGCTTACTGTAGTTTTGATGTCCTGTGGTTAATATTCATGATCGGTGTACCTCTTTTCCAAGAAAAAATATATCTTCCATCACCAGTTCTACTGATATTTACCATTATTATTATTATTATTACTATTATTATTATTATTATCTCGCCTGTAAATTAACTTGATATCATATGACTCACTAAATTACCCTTACAAATATTGCACTCGTAAAGAATTGTAATCATTTGTCCCATTTAATTCTTCCACCTATACCTCGCTTTACAACATGTGGAGTTAGTCATCAATCATGATGTTTAGTTTCTTTATAACAAGTAGTAGCCTTGTATGGCTTATCATCCCTCTCTGTGCTTTTCCATATGGTAACTAGTATGATAAAGTAGACTAATCATCTGATTTCATTTGTTTTCTGTGTATTGTTACTAATGTAAATTGTAGGATATGCATTTACATGTTCTGTTTTTCTTTATACCTGTTTTTTTGCTTTTAGTATTAATATATATATATATATATATATATATATTACAAGAATGCGTTTGCATCTGCCCTCTTCATATTATGTACAAATACACACTTCTTTGTAAAAGACGATAAAATANAATACCATTGCAGTATGAAACTACGGTAGATAACCGGTTTTCTCACCCTTATT ] [-] EMBL CD073639 [ TTTNTGCTTTTAGTATTAATATATATATATATATATATATATATATNNCAAGAATGCGTTTGCATCTGCCCTCTTCATATTATGTACAAATACACACTTCTTTGTAAAAGACGATAAAATAAAATACCATTGCAGTATGAAACTACGGTAGATAACCGGTTTTCTCACCCTTATTTTGTATTTTCAAAATCGCATACATACTAGAATTTATTCACATTGCTGTTTTATAATTACATTTAATTCAATCTATATGTATAGGTTGATATCTGTGTTATTTGAAGGTTTTTGTTTAATTAACCCGAGGCAATTATGGAGTGGAATTCTCAGAAATGCAAATAATGGAGCCAACCACAGCTCACAGAATATATACTTTTTAATGATCTCTACTTTTGCTTAATAATATTATATTTTGTTGTAGTATGTAGTTTTTTTATAAATGCCATCTTCCAGGTTCCAAGTAATCCTTTGTTTAGTCGATTTTTATTTTCTTCATCTTCCTCACTTGTTTTATTTTCTTGTTTGCTTCTGATCATCATTTCTTATTTATCGTTTGGTGCTTCCACCAAACAAGAAAGTGTTTACAGTTCGCCCCACTGTCCTCTTCGCAATTGCTTTCAATACATAACCTGACTAGCCGTTAAATAAACAATTTTTG] consensusID : consensus_6659#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 379 fasta sequence [CTGGCCTACAANCTGGTATGATAAATACAAATGCACAAAGTGTCGTACCCGCTAATTCTGGTCTAGGCTTACTGTAGTTTTGATGTCCTGTGGTTAATATTCATGATCGGTGTACCTCTTTTCCAAGAAAAAATATATCTTCCATCTCCAGTTCTACTGATATTTACCATTATTATTATTATTATTATTATTATCTCGCCTGTAAATTAACTTGATATCATATGACTCACTAAATTACCCTTACAAATATTGCACTCGTAAAGAATTGTAATCATTTGTCCCATTTAATTCTTCCCCCTATACCTCGCTTTACAAC-ATGTGGAGTTAGTCATCAATCATGATGTTTAGTTTCTTTATAACAAGTAGTAGCCTTGTATGG] [-] EMBL CD141647 [CTGGCCTACAANCTGGTATGATAAATACAAATGCACAAAGTGTCGTACCCGCTAATTCTGGTCTAGGCTTACTGTAGTTTTGATGTCCTGTGGTTAATATTCATGATCGGTGTACCTCTTTTCCAAGAAAAAATATATCTTCCATCTCCAGTTCTACTGATATTTACCATTATTATTATTATTATTATTATTATCTCGCCTGTAAATTAACTTGATATCATATGACTCACTAAATTACCCTTACAAATATTGCACTCGTAAAGAATTGTAATCATTTGTCCCATTTAATTCTTCCCCCTATACCTCGCTTTACAAC ATGTGGAGTTAGTCATCAATCATGATGTTTAGTTTCTTTATAACAAGTAGTAGCCTTGTATGG] [-] EMBL CD141593 [ TATTCATGATCGGTGTACCTCTTTTCCAAGAAAAAATATATCTTCCATCACCAGTTCTACTGATATTTACCATTATTATTATTATTATTATTATTATCTCGCCTGTAAATTAACTTGATATCATATGACTCACTAAATTACCCTTACAAATATTGCACTCGTAAAGAATTGTAATCATTTGTCCCATTTAATTCTTCCACCTATGTCTCGCTTTACACCGATGTGGA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6659#0 -----------------------------------------GTCGTACCCGCTAATTCTG 19 consensus_6659#1 CTGGCCTACAANCTGGTATGATAAATACAAATGCACAAAGTGTCGTACCCGCTAATTCTG 60 ******************* consensus_6659#0 GTCTAGGCTTACTGTAGTTTTGATGTCCTGTGGTTAATATTCATGATCGGTGTACCTCTT 79 consensus_6659#1 GTCTAGGCTTACTGTAGTTTTGATGTCCTGTGGTTAATATTCATGATCGGTGTACCTCTT 120 ************************************************************ consensus_6659#0 TTCCAAGAAAAAATATATCTTCCATCACCAGTTCTACTGATATTTACCATTATTATTATT 139 consensus_6659#1 TTCCAAGAAAAAATATATCTTCCATCTCCAGTTCTACTGATATTTACCATTATTATTATT 180 ************************** ********************************* consensus_6659#0 ATTATTACTATTATTATTATTATTATCTCGCCTGTAAATTAACTTGATATCATATGACTC 199 consensus_6659#1 ATTATTA------------TTATTATCTCGCCTGTAAATTAACTTGATATCATATGACTC 228 ******* ***************************************** consensus_6659#0 ACTAAATTACCCTTACAAATATTGCACTCGTAAAGAATTGTAATCATTTGTCCCATTTAA 259 consensus_6659#1 ACTAAATTACCCTTACAAATATTGCACTCGTAAAGAATTGTAATCATTTGTCCCATTTAA 288 ************************************************************ consensus_6659#0 TTCTTCCACCTATACCTCGCTTTACAACATGTGGAGTTAGTCATCAATCATGATGTTTAG 319 consensus_6659#1 TTCTTCCCCCTATACCTCGCTTTACAACATGTGGAGTTAGTCATCAATCATGATGTTTAG 348 ******* **************************************************** consensus_6659#0 TTTCTTTATAACAAGTAGTAGCCTTGTATGGCTTATCATCCCTCTCTGTGCTTTTCCATA 379 consensus_6659#1 TTTCTTTATAACAAGTAGTAGCCTTGTATGG----------------------------- 379 ******************************* consensus_6659#0 TGGTAACTAGTATGATAAAGTAGACTAATCATCTGATTTCATTTGTTTTCTGTGTATTGT 439 consensus_6659#1 ------------------------------------------------------------ consensus_6659#0 TACTAATGTAAATTGTAGGATATGCATTTACATGTTCTGTTTTTCTTTATACCTGTTTTT 499 consensus_6659#1 ------------------------------------------------------------ consensus_6659#0 TTGCTTTTAGTATTAATATATATATATATATATATATATATATTACAAGAATGCGTTTGC 559 consensus_6659#1 ------------------------------------------------------------ consensus_6659#0 ATCTGCCCTCTTCATATTATGTACAAATACACACTTCTTTGTAAAAGACGATAAAATANA 619 consensus_6659#1 ------------------------------------------------------------ consensus_6659#0 ATACCATTGCAGTATGAAACTACGGTAGATAACCGGTTTTCTCACCCTTATTTTGTATTT 679 consensus_6659#1 ------------------------------------------------------------ consensus_6659#0 TCAAAATCGCATACATACTAGAATTTATTCACATTGCTGTTTTATAATTACATTTAATTC 739 consensus_6659#1 ------------------------------------------------------------ consensus_6659#0 AATCTATATGTATAGGTTGATATCTGTGTTATTTGAAGGTTTTTGTTTAATTAACCCGAG 799 consensus_6659#1 ------------------------------------------------------------ consensus_6659#0 GCAATTATGGAGTGGAATTCTCAGAAATGCAAATAATGGAGCCAACCACAGCTCACAGAA 859 consensus_6659#1 ------------------------------------------------------------ consensus_6659#0 TATATACTTTTTAATGATCTCTACTTTTGCTTAATAATATTATATTTTGTTGTAGTATGT 919 consensus_6659#1 ------------------------------------------------------------ consensus_6659#0 AGTTTTTTTATAAATGCCATCTTCCAGGTTCCAAGTAATCCTTTGTTTAGTCGATTTTTA 979 consensus_6659#1 ------------------------------------------------------------ consensus_6659#0 TTTTCTTCATCTTCCTCACTTGTTTTATTTTCTTGTTTGCTTCTGATCATCATTTCTTAT 1039 consensus_6659#1 ------------------------------------------------------------ consensus_6659#0 TTATCGTTTGGTGCTTCCACCAAACAAGAAAGTGTTTACAGTTCGCCCCACTGTCCTCTT 1099 consensus_6659#1 ------------------------------------------------------------ consensus_6659#0 CGCAATTGCTTTCAATACATAACCTGACTAGCCGTTAAATAAACAATTTTTG 1151 consensus_6659#1 ---------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||