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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6659#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1151 fasta sequence
[GTCGTACCCGCTAATTCTGGTCTAGGCTTACTGTAGTTTTGATGTCCTGTGGTTAATATTCATGATCGGTGTACCTCTTTTCCAAGAAAAAATATATCTTCCATCACCAGTTCTACTGATATTTACCATTATTATTATTATTATTACTATTATTATTATTATTATCTCGCCTGTAAATTAACTTGATATCATATGACTCACTAAATTACCCTTACAAATATTGCACTCGTAAAGAATTGTAATCATTTGTCCCATTTAATTCTTCCACCTATACCTCGCTTTACAACATGTGGAGTTAGTCATCAATCATGATGTTTAGTTTCTTTATAACAAGTAGTAGCCTTGTATGGCTTATCATCCCTCTCTGTGCTTTTCCATATGGTAACTAGTATGATAAAGTAGACTAATCATCTGATTTCATTTGTTTTCTGTGTATTGTTACTAATGTAAATTGTAGGATATGCATTTACATGTTCTGTTTTTCTTTATACCTGTTTTTTTGCTTTTAGTATTAATATATATATATATATATATATATATATTACAAGAATGCGTTTGCATCTGCCCTCTTCATATTATGTACAAATACACACTTCTTTGTAAAAGACGATAAAATANAATACCATTGCAGTATGAAACTACGGTAGATAACCGGTTTTCTCACCCTTATTTTGTATTTTCAAAATCGCATACATACTAGAATTTATTCACATTGCTGTTTTATAATTACATTTAATTCAATCTATATGTATAGGTTGATATCTGTGTTATTTGAAGGTTTTTGTTTAATTAACCCGAGGCAATTATGGAGTGGAATTCTCAGAAATGCAAATAATGGAGCCAACCACAGCTCACAGAATATATACTTTTTAATGATCTCTACTTTTGCTTAATAATATTATATTTTGTTGTAGTATGTAGTTTTTTTATAAATGCCATCTTCCAGGTTCCAAGTAATCCTTTGTTTAGTCGATTTTTATTTTCTTCATCTTCCTCACTTGTTTTATTTTCTTGTTTGCTTCTGATCATCATTTCTTATTTATCGTTTGGTGCTTCCACCAAACAAGAAAGTGTTTACAGTTCGCCCCACTGTCCTCTTCGCAATTGCTTTCAATACATAACCTGACTAGCCGTTAAATAAACAATTTTTG]
[+] EMBL CD079362 [GTCGTACCCGCTAATTCTGGTCTAGGCTTACTGTAGTTTTGATGTCCTGTGGTTAATATTCATGATCGGTGTACCTCTTTTCCAAGAAAAAATATATCTTCCATCACCAGTTCTACTGATATTTACCATTATTATTATTATTATTACTATTATTATTATTATTATCTCGCCTGTAAATTAACTTGATATCATATGACTCACTAAATTACCCTTACAAATATTGCACTCGTAAAGAATTGTAATCATTTGTCCCATTTAATTCTTCCACCTATACCTCGCTTTACAACATGTGGAGTTAGTCATCAATCATGATGTTTAGTTTCTTTATAACAAGTAGTAGCCTTGTATGGCTTATCATCCCTCTCTGTGCTTTTCCATATGGTAACTAGTATGATAAAGTAGACTAATCATCTGATTTCATTTGTTTTCTGTGTATTGTTACTAATGTAAATTGTAGGATATGCATTTACATGTTCTGTTTTTCTTTATACCTGTTTTTTTGCTTTTAGTATTAATATATATATATATATATATATATATATTACAAGAATGCGTTTGCATCTGCCCTCTTCATATTATGTACAAATACACACTTCTTTGTAAAAGACGATAAAATANAATACCATTGCAGTATGAAACTACGGTAGATAACCGGTTTTCTCACCCTTATT ]
[-] EMBL CD073639 [ TTTNTGCTTTTAGTATTAATATATATATATATATATATATATATATNNCAAGAATGCGTTTGCATCTGCCCTCTTCATATTATGTACAAATACACACTTCTTTGTAAAAGACGATAAAATAAAATACCATTGCAGTATGAAACTACGGTAGATAACCGGTTTTCTCACCCTTATTTTGTATTTTCAAAATCGCATACATACTAGAATTTATTCACATTGCTGTTTTATAATTACATTTAATTCAATCTATATGTATAGGTTGATATCTGTGTTATTTGAAGGTTTTTGTTTAATTAACCCGAGGCAATTATGGAGTGGAATTCTCAGAAATGCAAATAATGGAGCCAACCACAGCTCACAGAATATATACTTTTTAATGATCTCTACTTTTGCTTAATAATATTATATTTTGTTGTAGTATGTAGTTTTTTTATAAATGCCATCTTCCAGGTTCCAAGTAATCCTTTGTTTAGTCGATTTTTATTTTCTTCATCTTCCTCACTTGTTTTATTTTCTTGTTTGCTTCTGATCATCATTTCTTATTTATCGTTTGGTGCTTCCACCAAACAAGAAAGTGTTTACAGTTCGCCCCACTGTCCTCTTCGCAATTGCTTTCAATACATAACCTGACTAGCCGTTAAATAAACAATTTTTG]
consensusID : consensus_6659#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 379 fasta sequence
[CTGGCCTACAANCTGGTATGATAAATACAAATGCACAAAGTGTCGTACCCGCTAATTCTGGTCTAGGCTTACTGTAGTTTTGATGTCCTGTGGTTAATATTCATGATCGGTGTACCTCTTTTCCAAGAAAAAATATATCTTCCATCTCCAGTTCTACTGATATTTACCATTATTATTATTATTATTATTATTATCTCGCCTGTAAATTAACTTGATATCATATGACTCACTAAATTACCCTTACAAATATTGCACTCGTAAAGAATTGTAATCATTTGTCCCATTTAATTCTTCCCCCTATACCTCGCTTTACAAC-ATGTGGAGTTAGTCATCAATCATGATGTTTAGTTTCTTTATAACAAGTAGTAGCCTTGTATGG]
[-] EMBL CD141647 [CTGGCCTACAANCTGGTATGATAAATACAAATGCACAAAGTGTCGTACCCGCTAATTCTGGTCTAGGCTTACTGTAGTTTTGATGTCCTGTGGTTAATATTCATGATCGGTGTACCTCTTTTCCAAGAAAAAATATATCTTCCATCTCCAGTTCTACTGATATTTACCATTATTATTATTATTATTATTATTATCTCGCCTGTAAATTAACTTGATATCATATGACTCACTAAATTACCCTTACAAATATTGCACTCGTAAAGAATTGTAATCATTTGTCCCATTTAATTCTTCCCCCTATACCTCGCTTTACAAC ATGTGGAGTTAGTCATCAATCATGATGTTTAGTTTCTTTATAACAAGTAGTAGCCTTGTATGG]
[-] EMBL CD141593 [ TATTCATGATCGGTGTACCTCTTTTCCAAGAAAAAATATATCTTCCATCACCAGTTCTACTGATATTTACCATTATTATTATTATTATTATTATTATCTCGCCTGTAAATTAACTTGATATCATATGACTCACTAAATTACCCTTACAAATATTGCACTCGTAAAGAATTGTAATCATTTGTCCCATTTAATTCTTCCACCTATGTCTCGCTTTACACCGATGTGGA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6659#0 -----------------------------------------GTCGTACCCGCTAATTCTG 19
consensus_6659#1 CTGGCCTACAANCTGGTATGATAAATACAAATGCACAAAGTGTCGTACCCGCTAATTCTG 60
*******************
consensus_6659#0 GTCTAGGCTTACTGTAGTTTTGATGTCCTGTGGTTAATATTCATGATCGGTGTACCTCTT 79
consensus_6659#1 GTCTAGGCTTACTGTAGTTTTGATGTCCTGTGGTTAATATTCATGATCGGTGTACCTCTT 120
************************************************************
consensus_6659#0 TTCCAAGAAAAAATATATCTTCCATCACCAGTTCTACTGATATTTACCATTATTATTATT 139
consensus_6659#1 TTCCAAGAAAAAATATATCTTCCATCTCCAGTTCTACTGATATTTACCATTATTATTATT 180
************************** *********************************
consensus_6659#0 ATTATTACTATTATTATTATTATTATCTCGCCTGTAAATTAACTTGATATCATATGACTC 199
consensus_6659#1 ATTATTA------------TTATTATCTCGCCTGTAAATTAACTTGATATCATATGACTC 228
******* *****************************************
consensus_6659#0 ACTAAATTACCCTTACAAATATTGCACTCGTAAAGAATTGTAATCATTTGTCCCATTTAA 259
consensus_6659#1 ACTAAATTACCCTTACAAATATTGCACTCGTAAAGAATTGTAATCATTTGTCCCATTTAA 288
************************************************************
consensus_6659#0 TTCTTCCACCTATACCTCGCTTTACAACATGTGGAGTTAGTCATCAATCATGATGTTTAG 319
consensus_6659#1 TTCTTCCCCCTATACCTCGCTTTACAACATGTGGAGTTAGTCATCAATCATGATGTTTAG 348
******* ****************************************************
consensus_6659#0 TTTCTTTATAACAAGTAGTAGCCTTGTATGGCTTATCATCCCTCTCTGTGCTTTTCCATA 379
consensus_6659#1 TTTCTTTATAACAAGTAGTAGCCTTGTATGG----------------------------- 379
*******************************
consensus_6659#0 TGGTAACTAGTATGATAAAGTAGACTAATCATCTGATTTCATTTGTTTTCTGTGTATTGT 439
consensus_6659#1 ------------------------------------------------------------
consensus_6659#0 TACTAATGTAAATTGTAGGATATGCATTTACATGTTCTGTTTTTCTTTATACCTGTTTTT 499
consensus_6659#1 ------------------------------------------------------------
consensus_6659#0 TTGCTTTTAGTATTAATATATATATATATATATATATATATATTACAAGAATGCGTTTGC 559
consensus_6659#1 ------------------------------------------------------------
consensus_6659#0 ATCTGCCCTCTTCATATTATGTACAAATACACACTTCTTTGTAAAAGACGATAAAATANA 619
consensus_6659#1 ------------------------------------------------------------
consensus_6659#0 ATACCATTGCAGTATGAAACTACGGTAGATAACCGGTTTTCTCACCCTTATTTTGTATTT 679
consensus_6659#1 ------------------------------------------------------------
consensus_6659#0 TCAAAATCGCATACATACTAGAATTTATTCACATTGCTGTTTTATAATTACATTTAATTC 739
consensus_6659#1 ------------------------------------------------------------
consensus_6659#0 AATCTATATGTATAGGTTGATATCTGTGTTATTTGAAGGTTTTTGTTTAATTAACCCGAG 799
consensus_6659#1 ------------------------------------------------------------
consensus_6659#0 GCAATTATGGAGTGGAATTCTCAGAAATGCAAATAATGGAGCCAACCACAGCTCACAGAA 859
consensus_6659#1 ------------------------------------------------------------
consensus_6659#0 TATATACTTTTTAATGATCTCTACTTTTGCTTAATAATATTATATTTTGTTGTAGTATGT 919
consensus_6659#1 ------------------------------------------------------------
consensus_6659#0 AGTTTTTTTATAAATGCCATCTTCCAGGTTCCAAGTAATCCTTTGTTTAGTCGATTTTTA 979
consensus_6659#1 ------------------------------------------------------------
consensus_6659#0 TTTTCTTCATCTTCCTCACTTGTTTTATTTTCTTGTTTGCTTCTGATCATCATTTCTTAT 1039
consensus_6659#1 ------------------------------------------------------------
consensus_6659#0 TTATCGTTTGGTGCTTCCACCAAACAAGAAAGTGTTTACAGTTCGCCCCACTGTCCTCTT 1099
consensus_6659#1 ------------------------------------------------------------
consensus_6659#0 CGCAATTGCTTTCAATACATAACCTGACTAGCCGTTAAATAAACAATTTTTG 1151
consensus_6659#1 ----------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||