These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6663#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 651 fasta sequence [TCTTTTTTCATTACTTTTTACTTGAAATCAGAAACGTACATAATTTAAAATACATAGATATATATACAAATACACCAGACCATAAATAAATAATTTATAAACAAATCAACTAATTAGTTCTTTGTCTTTCACGACGATGTTTATCATTTGTATTTTTACTACCCGTAGGTGGTTGTCTTCCTTTATTACTATTTTTCTCCATTGATGTCGTCGTCTTCTTTTTCTTCGATGTTATTACTTTCATAACACGAGTTTTACTGATTTTGTTAGATGTCTTTTCTTTTACTAATTTACTGCTACTATTAATCTGTTTACTACAGTTTTCCATACAATCTATAGGATTTAATCCAGGCAATTTTAAATGTCTC-TCAGATTTACCATTTTGTGAATTGTGGATTATTTCAAAACCAGCAGGAATATCCAAATCCAATCTTAAACGACGTACTAAATAAAGTGTACTAGCTATTTCTTCTGGAATAGTGGTTCCATTGAATTTATCATCATCAAGTGATAATAAATTTAGTAATCTTTCTGAAGATGTTGAAAAGTGACTG-G-AAATTT--GATTTAAATTAATTTGATGAACATCTTTATCAAATGATTGATCACTGACAGATTGGTAAATATCAAACGAATTATCGGATGGCATCTTGG] [+] EMBL CD073686 [TCTTTTTTCATTACTTTTTACTTGAAATCAGAAACGTACATAATTTAAAATACATAGATATATATACAAATACACCAGACCATAAATAAATAATTTATAAACAAATCAACTAATTAGTTCTTTGTCTTTCACGACGATGTTTATCATTTGTATTTTTACTACCCGTAGGTGGTTGTCTTCCTTTATTACTATTTTTCTCCATTGATGTCGTCGTCTTCTTTTTCTTCGATGTTATTACTTTCATAACACGAGTTTTACTGATTTTGTTAGATGTCTTTTCTTTTACTAATTTACTGCTACTATTAATCTGTTTACTACAGTTTTCCATACAATCTATAGGATTTAATCCAGGCAATTTTAAATGTCTC TCAGATTTACCATTTTGTGAATTGTGGATTATTTCAAAACCAGCAGGAATATCCAAATCCAATCTTAAACGACGTACTAAATAAAGTGTACTAGCTATTTCTTCTGGAATAGTGGTTCCATTGAATTTATCATCATCAAGTGATAATAAATTTAGTAATCTTTCTGAAGATGTTGAAAAGTGACTG G AAATTT GATTTAAATTAATTTGATGAACATCTTTATCAAATGATTGATCACTGACAGATTGGTAAATATCAAACGAATTATCGGATGGCATCTTGG] [-] EMBL AI381069 [ GGCAATTTTAAATTTCTCGCCGGATAAACAGTTTTGTGAATTGTGGATTATTTCAAAACCAGCAGGAATATCCAAATCCAATCTTAAACGACGTACTAAATAAAGTGTACTAGCTATTTCTTCTGGAATAGTGGTTCCATTGAATTTATCATCATCAAGTGATAATAAATTTAGTAATCTTTCTGAAGATGTTGAAAAGTGACTGAGTAAATTTTCGATTT ] [+] EMBL CD145708 [ CTATTTCTTCTGGAATAGTGGTTCCATTGAATTTATCATCATCAAGTGATAATAAATTTAGTAATCTTTCTGAAGATGTTGAAAAGTGACTG G AAATTT GATTTAAATTAATTTGATGAACATCTT ] consensusID : consensus_6663#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence [TCTTTTTTCATTACTTTTTACTTGAAATCAGAAACGTACATAATTTAAAATACATAGATATATATACAAATACACCAGACCATAAATAAATAATTTATAAACAAATCAACTAATTAGTTCTTTGTCTTTCACGACGATGTTTATCATTTGTATTTTTACTACCCGTAGTGGTTGTCTTCCTTTATTACTATTTTTCTCCATTGATGTCGTCGTCTTCTTTTTCTTCGATGTTATTACTTTCATAACACGAGTTTTACTGATTTTGTTAGATGTCTTTTCTTTTACAATTTACTGCGACTATTAATCTGTTTACAAAGGTTTTCTAACATTCTTAACGATTTATCCCGGCATTTTAATTTCTCTCGATTTACATTTTGGGATTGGGGTATTCAAACCGCGGATTTCCATTCTATCTAAACGACTGATCATAAAGTGACAG] [+] EMBL AI723369 [TCTTTTTTCATTACTTTTTACTTGAAATCAGAAACGTACATAATTTAAAATACATAGATATATATACAAATACACCAGACCATAAATAAATAATTTATAAACAAATCAACTAATTAGTTCTTTGTCTTTCACGACGATGTTTATCATTTGTATTTTTACTACCCGTAGTGGTTGTCTTCCTTTATTACTATTTTTCTCCATTGATGTCGTCGTCTTCTTTTTCTTCGATGTTATTACTTTCATAACACGAGTTTTACTGATTTTGTTAGATGTCTTTTCTTTTACAATTTACTGCGACTATTAATCTGTTTACAAAGGTTTTCTAACATTCTTAACGATTTATCCCGGCATTTTAATTTCTCTCGATTTACATTTTGGGATTGGGGTATTCAAACCGCGGATTTCCATTCTATCTAAACGACTGATCATAAAGTGACAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6663#0 TCTTTTTTCATTACTTTTTACTTGAAATCAGAAACGTACATAATTTAAAATACATAGATA 60 consensus_6663#1 TCTTTTTTCATTACTTTTTACTTGAAATCAGAAACGTACATAATTTAAAATACATAGATA 60 ************************************************************ consensus_6663#0 TATATACAAATACACCAGACCATAAATAAATAATTTATAAACAAATCAACTAATTAGTTC 120 consensus_6663#1 TATATACAAATACACCAGACCATAAATAAATAATTTATAAACAAATCAACTAATTAGTTC 120 ************************************************************ consensus_6663#0 TTTGTCTTTCACGACGATGTTTATCATTTGTATTTTTACTACCCGTAGGTGGTTGTCTTC 180 consensus_6663#1 TTTGTCTTTCACGACGATGTTTATCATTTGTATTTTTACTACCCGTAG-TGGTTGTCTTC 179 ************************************************ *********** consensus_6663#0 CTTTATTACTATTTTTCTCCATTGATGTCGTCGTCTTCTTTTTCTTCGATGTTATTACTT 240 consensus_6663#1 CTTTATTACTATTTTTCTCCATTGATGTCGTCGTCTTCTTTTTCTTCGATGTTATTACTT 239 ************************************************************ consensus_6663#0 TCATAACACGAGTTTTACTGATTTTGTTAGATGTCTTTTCTTTTACTAATTTACTGCTAC 300 consensus_6663#1 TCATAACACGAGTTTTACTGATTTTGTTAGATGTCTTTTCTTTTAC-AATTTACTGCGAC 298 ********************************************** ********** ** consensus_6663#0 TATTAATCTGTTTACTACAGTTTTCCATACAATCTATAGGATTTAATCCAGGCAATTTTA 360 consensus_6663#1 TATTAATCTGTTTACAAAGGTTTTCTA-ACATTCTTAACGATTTA-TCCCGGCATTTT-- 354 *************** * ****** * *** *** * ****** *** **** *** consensus_6663#0 AATGTCTCTCAGATTTACCATTTTGTGAATTGTGGATTATTTCAAAACCAGCAGGAATAT 420 consensus_6663#1 AATTTCTCTC-GATTTAC-ATTTTG-GGATTGGGG--TATTC--AAACCGC---GGATTT 404 *** ****** ******* ****** * **** ** **** ***** * ** * consensus_6663#0 CCAAATCCAATCTTAAACGACGTACTAAATAAAGTGTACTAGCTATTTCTTCTGGAATAG 480 consensus_6663#1 CCA--TTCTATCT-AAACGACTGATCA--TAAAGTG-ACAG------------------- 439 *** * * **** ******* * * ******* ** consensus_6663#0 TGGTTCCATTGAATTTATCATCATCAAGTGATAATAAATTTAGTAATCTTTCTGAAGATG 540 consensus_6663#1 ------------------------------------------------------------ consensus_6663#0 TTGAAAAGTGACTGGAAATTTGATTTAAATTAATTTGATGAACATCTTTATCAAATGATT 600 consensus_6663#1 ------------------------------------------------------------ consensus_6663#0 GATCACTGACAGATTGGTAAATATCAAACGAATTATCGGATGGCATCTTGG 651 consensus_6663#1 --------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||