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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6667#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1069 fasta sequence
[ATCATTTTTTTTTATTTTTTTTGAGCTTCATGATGAAATATCTATTTTTAAATTTGAATCAAATCTACAGAAGTAGAAGTAAAAATATAATCCGCATTAAAGTCGCATTCCTTTTCTGACCGTGATCCAACCGTCATCATCAGGTTTATTACTGTATTCCATACGTTTCTTGAAATAATTCTGTAGAATTGCTTCCGAATCACTTTTAGACTTTTGATAATCTATTATCCATTCGGGATTTAGAGTTAAATAGCATTCAGGAATGTTAATATCGGTCAAGTTGAACTCGTAAGTTGTATTCATTGGAGATACTAGAATTTTTTCTACACATTGTGATTCGTTAAATTCAAAGACACATCGAGCTTCAGGCTAATGAATTTCCAAAAGTTAATCAGACAAAATAATTGTGAAAGCCTACTGGTGAGTAGCGTAAACTAGTTATTTCACCAAATGATTTAAAGAAATCCAACAATGACTTCTATAGAGTTAGAAATATATTACAAACAAATTATTGAACAATTACCGCGTCCATCAAAGGATGTACATTGTAAATTAGAACAGATTTTTTCCCCAATTTTTCTGCATACATAAAGTGAGTAATACATTTCCCTAAACTCACGGGAATCGCTACAATTCAAAATAATTAAACGAATATACTATTGTGCAAAACTGGTTTGTTAGAGGTTAATAAATGATCAGTAGCGACTGGCCTATACATATATTGAATATCTCATTCAAATGATCCTACAATCCTTATATACCTCGATACTCGAAATAAAAACTGGTCACCCGTACTAGTCTATTAAAATACAAAACGCGTTCTCAATGAATTTGACAGTTTGGATTTATTAATTATCAACAGGTTGATGTAAGACAATATGAGCCACATCAATGGTGCGAAAAATGATGGTACTAGCCAATTTACTAAACGCTACGTAAAGTAATACGATCGAAAGCAGTGTGCACAATACTGAAGCATCCTTATTTACATTTAATTATGAAAACAACCTGACCAAATAAAATAACAGGTCTATTTTGTCAGACGCCCCTCGTGCCGAATTTTGGCCTN]
[+] EMBL CD073769 [ATCATTTTTTTTTATTTTTTTTGAGCTTCATGATGAAATATCTATTTTTAAATTTGAATCAAATCTACAGAAGTAGAAGTAAAAATATAATCCGCATTAAAGTCGCATTCCTTTTCTGACCGTGATCCAACCGTCATCATCAGGTTTATTACTGTATTCCATACGTTTCTTGAAATAATTCTGTAGAATTGCTTCCGAATCACTTTTAGACTTTTGATAATCTATTATCCATTCGGGATTTAGAGTTAAATAGCATTCAGGAATGTTAATATCGGTCAAGTTGAACTCGTAAGTTGTATTCATTGGAGATACTAGAATTTTTTCTACACATTGTGATTCGTTAAATTCAAAGACACATCGAGCTTCAGGCTAATGAATTTCCAAAAGTTAATCAGACAAAATAATTGTGAAAGCCTACTGGTGAGTAGCGTAAACTAGTTATTTCACCAAATGATTTAAAGAAATCCAACAATGACTTCTATAGAGTTAGAAATATATTACAAACAAATTATTGAACAATTACCGCGTCCATCAAAGGATGTACATTGTAAATTAGAACAGATTTTTTCCCCAATTTTTCTGCATACATAAAGTGAGTAATACATTTCCCTAAACTCACGGGAATCGCTACAATTCAAAATAATTAAACGAATATACTATTGTGCAAAACTGGTTTGTTAGAGGTTAATAAATGATCAGTAGCGACTGGCCTATACATATATTGAATATCTCATTCAAATGA ]
[-] EMBL CD079500 [ TTCTACACATTGTGATTCGTTAAATTCAAAGACACATCGAGCTTCAGGCTAATG ATTTCCAAAAGTTAATCAGACAAAATAATTGTGAAAGCCTACTGGTGAGTAGCGTAAACTAGTTATTTCACCAAATGATTTAAAGAAATCCAACAATGACTTCTATAGAGTTAGAAATATATTACAAACAAATTATTGAACAATTACCGCGTCCATCAAAGGATGTACATTGTAAATTAGAACAGATTTTTTCCCCAATTTTTCTGCATACATAAAGTGAGTAATACATTTCCCTAAACTCACGGGAATCGCTACAATTCAAAATAATTAAACGAATATACTATTGTGCAAAACTGGTTTGTTAGAGGTTAATAAATGATCAGTAGCGACTGGCCTATACATATATTGAATATCTCATTCAAATGATCCTACAATCCTTATATACCTCGATACTCGAAATAAAAACTGGTCACCCGTACTAGTCTATTAAAATACAAAACGCGTTCTCAATGAATTTGACAGTTTGGATTTATTAATTATCAACAGGTTGATGTAAGACAATATGAGCCACATCAATGGTGCGAAAAATGATGGTACTAGCCAATTTACTAAACGCTACGTAAAGTAATACGATCGAAAGCAGTGTGCACAATACTGAAGCATCCTTATTTACATTTAATTATGAAAACAACCTGACCAAATAAAATAACAGGTCTATTTTGTCAGACGCCCCTCGTGCCGAATTTTGGCCTN]
consensusID : consensus_6667#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 799 fasta sequence
[CTCCCTTCCCCAAGTGCACGTATGAGTTCAGTTNATTGTACAATACTCAGCATTTCACGACGTATAATAACTGTAGGTAGCTGTATCGTGTTACGAACTACCANGATCTGTCATATATAGCATCGTGTTAATAATAAAGGAATAGGAAATCCCTGAAGACAGTAATATTACATTGCAGATGGCTGAAAGTAAGCAAACATAAATGAGCTTCATGATGAAATATCTATTGCATAAATTTCAGCCAAATTTACAGAAGTAGAAGTAAAAATATAATCCGCACTAAAGTCGCATTCCTTTTCTGACCGTGATCCAACCGTCATCATCAGGTTTATTACTGTATTCCATACGTTTCTTGAAATAATTCTGTAGAATTGCTTCCGAATCACTTTTAGACTTTTGATAATCTATTATCCATTCGGGATTTCGAGTTAAATAGCATTCAGGAATGTTAATATCGGTCAAGTTGAACTGGTAAGTTGTATTCATTGGAGATACTAGAATTTTTTCTACACATTGTGATTCGTTAAATTCAAAGACACATCGAGCTTCAGGTGGTGAGTAGCGTAAACTAGTTATTTCACCAAATGATTTAAAGAAATCCAACAATGACTTCGCGTCCATCAAAGGATGTACATTGTAAATTAGATCAGATTTTTTCGCGCAATTTTTGTGCATACATAAAGTGAGTAATACATTTCCCTAAACTCACGGGAATCGCAGTTAGTCCTTTAATTATCAGTGGTTCATTCATCATCATTTAGCTTGGCCTGTGTTTGCAGTATTAATATACAATGGCAAC]
[-] EMBL CD080049 [CTCCCTTCCCCAAGTGCACGTATGAGTTCAGTTNATTGTACAATACTCAGCATTTCACGACGTATAATAACTGTAGGTAGCTGTATCGTGTTACGAACTACCANGATCTGTCATATATAGCATCGTGTTAATAATAAAGGAATAGGAAATCCCTGAAGACAGTAATATTACATTGCAGATGGCTGAAAGTAAGCAAACATAAATGAGCTTCATGATGAAATATCTATTGCATAAATTTCAGCCAAATTTACAGAAGTAGAAGTAAAAATATAATCCGCACTAAAGTCGCATTCCTTTTCTGACCGTGATCCAACCGTCATCATCAGGTTTATTACTGTATTCCATACGTTTCTTGAAATAATTCTGTAGAATTGCTTCCGAATCACTTTTAGACTTTTGATAATCTATTATCCATTCGGGATTTCGAGTTAAATAGCATTCAGGAATGTTAATATCGGTCAAGTTGAACTGGTAAGTTGTATTCATTGGAGATACTAGAATTTTTTCTACACATTGTGATTCGTTAAATTCAAAGACACATCGAGCTTCAGGTGGTGAGTAGCGTAAACTAGTTATTTCACCAAATGATTTAAAGAAATCCAACAATGACTTCGCGTCCATCAAAGGATGTACATTGTAAATTAGATCAGATTTTTTCGCGCAATTTTTGTGCATACATAAAGTGAGTAATACATTTCCCTAAACTCACGGGAATCGCAGTTAGTCCTTTAATTATCAGTGGTTCATTCATCATCATTTAGCTTGGCCTGTGTTTGCAGTATTAATATACAATGGCAAC]
[-] EMBL CD192240 [ TGGTGAGTAGCGTAAACTAGTTATTTCACCAAATGATTTAAAGAAATCCAACAATGACTTCGCGTCCATCAAAGGATGTACATTGTAAATTAGAACAGATTTTTTC CCCAATTTTTCTGCATACATAAAGTGAGTAATACATTTCCCTAAACTCACGGGAATCGCAGTTAGTCCTTTAATTATCAGTGGTTCATTCATCATCA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6667#0 ------------------------------------------------------------
consensus_6667#1 CTCCCTTCCCCAAGTGCACGTATGAGTTCAGTTNATTGTACAATACTCAGCATTTCACGA 60
consensus_6667#0 ------------------------------------------------------------
consensus_6667#1 CGTATAATAACTGTAGGTAGCTGTATCGTGTTACGAACTACCANGATCTGTCATATATAG 120
consensus_6667#0 ------------------------------------------------------------
consensus_6667#1 CATCGTGTTAATAATAAAGGAATAGGAAATCCCTGAAGACAGTAATATTACATTGCAGAT 180
consensus_6667#0 --ATCATTTTTTTTTATTTTTTTTGAGCTTCATGATGAAATATCTATTTT-TAAATTTGA 57
consensus_6667#1 GGCTGAAAGTAAGCAAACATAAATGAGCTTCATGATGAAATATCTATTGCATAAATTTCA 240
* * * * * ************************* ******* *
consensus_6667#0 ATCAAATCTACAGAAGTAGAAGTAAAAATATAATCCGCATTAAAGTCGCATTCCTTTTCT 117
consensus_6667#1 GCCAAATTTACAGAAGTAGAAGTAAAAATATAATCCGCACTAAAGTCGCATTCCTTTTCT 300
***** ******************************* ********************
consensus_6667#0 GACCGTGATCCAACCGTCATCATCAGGTTTATTACTGTATTCCATACGTTTCTTGAAATA 177
consensus_6667#1 GACCGTGATCCAACCGTCATCATCAGGTTTATTACTGTATTCCATACGTTTCTTGAAATA 360
************************************************************
consensus_6667#0 ATTCTGTAGAATTGCTTCCGAATCACTTTTAGACTTTTGATAATCTATTATCCATTCGGG 237
consensus_6667#1 ATTCTGTAGAATTGCTTCCGAATCACTTTTAGACTTTTGATAATCTATTATCCATTCGGG 420
************************************************************
consensus_6667#0 ATTTAGAGTTAAATAGCATTCAGGAATGTTAATATCGGTCAAGTTGAACTCGTAAGTTGT 297
consensus_6667#1 ATTTCGAGTTAAATAGCATTCAGGAATGTTAATATCGGTCAAGTTGAACTGGTAAGTTGT 480
**** ********************************************* *********
consensus_6667#0 ATTCATTGGAGATACTAGAATTTTTTCTACACATTGTGATTCGTTAAATTCAAAGACACA 357
consensus_6667#1 ATTCATTGGAGATACTAGAATTTTTTCTACACATTGTGATTCGTTAAATTCAAAGACACA 540
************************************************************
consensus_6667#0 TCGAGCTTCAGGCTAATGAATTTCCAAAAGTTAATCAGACAAAATAATTGTGAAAGCCTA 417
consensus_6667#1 TCGAGCTTCAGG------------------------------------------------ 552
************
consensus_6667#0 CTGGTGAGTAGCGTAAACTAGTTATTTCACCAAATGATTTAAAGAAATCCAACAATGACT 477
consensus_6667#1 -TGGTGAGTAGCGTAAACTAGTTATTTCACCAAATGATTTAAAGAAATCCAACAATGACT 611
***********************************************************
consensus_6667#0 TCTATAGAGTTAGAAATATATTACAAACAAATTATTGAACAATTACCGCGTCCATCAAAG 537
consensus_6667#1 TC---------------------------------------------GCGTCCATCAAAG 626
** *************
consensus_6667#0 GATGTACATTGTAAATTAGAACAGATTTTTTCCC-CAATTTTTCTGCATACATAAAGTGA 596
consensus_6667#1 GATGTACATTGTAAATTAGATCAGATTTTTTCGCGCAATTTTTGTGCATACATAAAGTGA 686
******************** *********** * ******** ****************
consensus_6667#0 GTAATACATTTCCCTAAACTCACGGGAATCGCTACAATTCAA--AATAATTAAACGAATA 654
consensus_6667#1 GTAATACATTTCCCTAAACTCACGGGAATCGCAGTTAGTCCTTTAATTATCAGTGGTTCA 746
******************************** * ** *** ** * * *
consensus_6667#0 T--ACTATTGTGCAAAACTGGTTTGTTAGAGGTTAATAAATGATCAGTAGCGACTGGCCT 712
consensus_6667#1 TTCATCATCATTTAGC-TTGGCCTGTGTTTGCAGTATTAATATACAATGGCAAC------ 799
* * ** * * *** *** * ** *** ** * ** **
consensus_6667#0 ATACATATATTGAATATCTCATTCAAATGATCCTACAATCCTTATATACCTCGATACTCG 772
consensus_6667#1 ------------------------------------------------------------
consensus_6667#0 AAATAAAAACTGGTCACCCGTACTAGTCTATTAAAATACAAAACGCGTTCTCAATGAATT 832
consensus_6667#1 ------------------------------------------------------------
consensus_6667#0 TGACAGTTTGGATTTATTAATTATCAACAGGTTGATGTAAGACAATATGAGCCACATCAA 892
consensus_6667#1 ------------------------------------------------------------
consensus_6667#0 TGGTGCGAAAAATGATGGTACTAGCCAATTTACTAAACGCTACGTAAAGTAATACGATCG 952
consensus_6667#1 ------------------------------------------------------------
consensus_6667#0 AAAGCAGTGTGCACAATACTGAAGCATCCTTATTTACATTTAATTATGAAAACAACCTGA 1012
consensus_6667#1 ------------------------------------------------------------
consensus_6667#0 CCAAATAAAATAACAGGTCTATTTTGTCAGACGCCCCTCGTGCCGAATTTTGGCCTN 1069
consensus_6667#1 ---------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||