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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6669#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1164 fasta sequence
[CCAGCCAANAATTTGGCACGAGGATCACTTCCAGCTAAACGAAAATCAGACATTTCAGGTACTTTTTGTTTAGTGTTAAGTACGTCTTTGTGTTTGGTGCATGCACTCCAATTTTGAAATGTGACTGATTATTGCTACTGCTGCCACTTTCTGCTACTTCTGGTACTGTTTGTGTATATCACTTTACAAGTATGTGCTTATGTATGTCTACTTATGTTTTTGTACATAACATTTACATTCTGTTTTTGATGATGATAATGATGGTACGGATTTTAGTTTCTTCCGTTATCTCTTAAAATTCTAGTAATTTGCATTTAAAAACATGCACATGCCTGGTGGGATAAAATTAACTTTCCTATCTCTTATTCTCTTCATATTCTAACAACTACCTATTTCTATTCTTATTTCTGCTGAAATAATCAAGTACGCTGAATGCCTAAACATTTACTAATGATGCCTTGTTTTATATCCTTTCTGCAAAAAATAAATAGGGTAACATTTTCTCCAAGTAAGGCAAAGTTGTGTATACGTCTATTTTGTTTTGATTGAAATGAGCTGAGTGAAATATAGGTTTCTTCTGCTCCATTTATTCGTTCGTTAGTTGGTTTGTTGATCTGTTTGCTTTTGTCAAACTTAACTAGTAATTTTGGTAGTATTATGATATTTATATGCTACTTATAATCAAGCATGTGATATGTT-TTAACCAGTAACCATATAATGTTAAACCAACAAATATCTTTGTAGCATTTTTAGTCTCGTATTGTCATACATACGCGTTTTTGAAGTCTATCTATCAGTTCACTTGACGTATATGAAAGTTTGTTGCCACTTTTCTTTACTCTGTTGAGAAACATCATTCTTATTTGAATGGTCTGTTTTATATTTACTTTGAAGGTATAATCTATAATATTTTCTGATCGGAATTTCATTATTAT-TTGTATTCTTTGACTACTATTATGCTGTATCCATGTTCTATGCTACAAATTACTTCATACATTTTATTTCCCTCAAAATCATCATTTATTAATGACTGAAACATTTCTTTATGACTGCAATTTTTTTACTTTTGAAATGAGTTGTGATTACCTCATTGTCCAAGTCTTTTCCTTTTGGTTTCTACATCTATTTATCTTCATTTCAGTAAACAAAAATGAAATAAAACTT]
[+] EMBL CD079595 [CCAGCCAANAATTTGGCACGAGGATCACTTCCAGCTAAACGAAAATCAGACATTTCAGGTACTTTTTGTTTAGTGTTAAGTACGTCTTTGTGTTTGGTGCATGCACTCCAATTTTGAAATGTGACTGATTATTGCTACTGCTGCCACTTTCTGCTACTTCTGGTACTGTTTGTGTATATCACTTTACAAGTATGTGCTTATGTATGTCTACTTATGTTTTTGTACATAACATTTACATTCTGTTTTTGATGATGATAATGATGGTACGGATTTTAGTTTCTTCCGTTATCTCTTAAAATTCTAGTAATTTGCATTTAAAAACATGCACATGCCTGGTGGGATAAAATTAACTTTCCTATCTCTTATTCTCTTCATATTCTAACAACTACCTATTTCTATTCTTATTTCTGCTGAAATAATCAAGTACGCTGAATGCCTAAACATTTACTAATGATGCCTTGTTTTATATCCTTTCTGCAAAAAATAAATAGGGTAACATTTTCTCCAAGTAAGGCAAAGTTGTGTATACGTCTATTTTGTTTTGATTGAAATGAGCTGAGTGAAATATAGGTTTCTTCTGCTCCATTTATTCGTTCGTTAGTTGGTTTGTTGATCTGTTTGCTTTTGTCAAACTTAACTAGTAATTNTGGTAGTATTATGATATTTATATGCTACTTATAATCAAGCATGTGATATGTTNTAAACCAGT ACCATATAATGTTAAAC ]
[-] EMBL CD073857 [ AAATAAATAGGGTAACA TTTCTCCAAGTAAGGCAAAGTTGTGTATACGTCTATTTTGTTTTGATTGAAATGAGCTGAGTGAAATATAGGTTTCTTCTGCTCCATTTATTCGTTCGTTAGTTGGTTTGTTGATCTGTTTGCTTTTGTCAAACTTAACTAGTAATTTTGGTAGTATTATGATATTTATATGCTACTTATAATCAAGCATGTGATATGTT TTAACCAGTAACCATATAATGTTAAACCAACAAATATCTTTGTAGCATTTTTAGTCTCGTATTGTCATACATACGCGTTTTTGAAGTCTATCTATCAGTTCACTTGACGTATATGAAAGTTTGTTGCCACTTTTCTTTACTCTGTTGAGAAACATCATTCTTATTTGAATGGTCTGTTTTATATTTACTTTGAAGGTATAATCTATAATATTTTCTGATCGGAATTTCATTATTAT TTGTATTCTTTGACTACTATTATGCTGTATCCATGTTCTATGCTACAAATTACTTCATACATTTTATTTCCCTCAAAATCATCATTTATTAATGACTGAAACATTTCTTTATGACTGCAATTTTTTTACTTTTGAAATGAGTTGTGATTACCTCATTGTCCAAGTCTTTTCCTTTTGGTTTCTACATCTATTTATCTTCATTTCAGTAAACAAAAATGAAATAAAACTT]
[-] EMBL CD073858 [ aGTTAGTTGGTGTGTTGATCTGTTTGCTTTTGTCAAACTTAACTAGTAATTTTGGTAGTAGTATGATATTTATATGCTACTTATAATCAAGCATGTGATATGTT TTAACCAGTAACCATATAATGTTAAACCAACTAATATCTTTGTAGCATTTTAAGTCTCGTATTGTCATACATACGCATTTTTGAAGTCTATATATCAGTTCTCTTGACGTATATGAAAGTTTGTTGCCACTTTTCTTTACTGTGTTAAGAAACATCATTCTTATTTGAATGGTCTGTTTTATATTTACTTTGAAGGTATAATCTATAATATTTTCTGATCGGAATTTCATTAAAATATTGTATTCTTTGACTCCTATTATGCTGTATCCATGTTCTATGCTACAAATTACTTCATACATTTAATTTCCCTCAAAATCATCATTTATTAATAACTAAAACATTTCT ]
consensusID : consensus_6669#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 377 fasta sequence
[ACCCGGTTTGAGGCCCTCACAGGACCCTGCCGTATATGAAAGTTTGTGCCCCCTTCCTTACCTGTTGAGAACATCAATCCTTATTGAATGGGCGGGGGTAAATTACTTTGGGGGATAAACTATAATAATTTCTGAGCGGAAGTCATAATAAATGTAATCTTGACTACCAATATGCTGTATCCATGTCTATGCTACAAATTACNTCATACATTTTATTTCCCTCAAAATCATCATTTATTAATGACTGAAACATTTCTTTATGACTGCAATTTTTTTACTTTTGAAATGAGTTGTGATTACCTCATTGTCCAAGTCTTTTCCTTTTGGTTTCTACATCTATTTATCTTCATTTCAGTAAACAAAAATGAAATAAAACT]
[-] EMBL SMAA69934 [ACCCGGTTTGAGGCCCTCACAGGACCCTGCCGTATATGAAAGTTTGTGCCCCCTTCCTTACCTGTTGAGAACATCAATCCTTATTGAATGGGCGGGGGTAAATTACTTTGGGGGATAAACTATAATAATTTCTGAGCGGAAGTCATAATAAATGTAATCTTGACTACCAATATGCTGTATCCATGTCTATGCTACAAATTACNTCATACATTTTATTTCCCTCAAAATCATCATTTATTAATGACTGAAACATTTCTTTATGACTGCAATTTTTTTACTTTTGAAATGAGTTGTGATTACCTCATTGTCCAAGTCTTTTCCTTTTGGTTTCTACATCTATTTATCTTCATTTCAGTAAACAAAAATGAAATAAAACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6669#0 CCAGCCAANAATTTGGCACGAGGATCACTTCCAGCTAAACGAAAATCAGACATTTCAGGT 60
consensus_6669#1 ------------------------------------------------------------
consensus_6669#0 ACTTTTTGTTTAGTGTTAAGTACGTCTTTGTGTTTGGTGCATGCACTCCAATTTTGAAAT 120
consensus_6669#1 ------------------------------------------------------------
consensus_6669#0 GTGACTGATTATTGCTACTGCTGCCACTTTCTGCTACTTCTGGTACTGTTTGTGTATATC 180
consensus_6669#1 ------------------------------------------------------------
consensus_6669#0 ACTTTACAAGTATGTGCTTATGTATGTCTACTTATGTTTTTGTACATAACATTTACATTC 240
consensus_6669#1 ------------------------------------------------------------
consensus_6669#0 TGTTTTTGATGATGATAATGATGGTACGGATTTTAGTTTCTTCCGTTATCTCTTAAAATT 300
consensus_6669#1 ------------------------------------------------------------
consensus_6669#0 CTAGTAATTTGCATTTAAAAACATGCACATGCCTGGTGGGATAAAATTAACTTTCCTATC 360
consensus_6669#1 ------------------------------------------------------------
consensus_6669#0 TCTTATTCTCTTCATATTCTAACAACTACCTATTTCTATTCTTATTTCTGCTGAAATAAT 420
consensus_6669#1 ------------------------------------------------------------
consensus_6669#0 CAAGTACGCTGAATGCCTAAACATTTACTAATGATGCCTTGTTTTATATCCTTTCTGCAA 480
consensus_6669#1 ------------------------------------------------------------
consensus_6669#0 AAAATAAATAGGGTAACATTTTCTCCAAGTAAGGCAAAGTTGTGTATACGTCTATTTTGT 540
consensus_6669#1 ------------------------------------------------------------
consensus_6669#0 TTTGATTGAAATGAGCTGAGTGAAATATAGGTTTCTTCTGCTCCATTTATTCGTTCGTTA 600
consensus_6669#1 ------------------------------------------------------------
consensus_6669#0 GTTGGTTTGTTGATCTGTTTGCTTTTGTCAAACTTAACTAGTAATTTTGGTAGTATTATG 660
consensus_6669#1 ------------------------------------------------------------
consensus_6669#0 ATATTTATATGCTACTTATAATCAAGCATGTGATATGTTTTAACCAGTAACCATATAATG 720
consensus_6669#1 ------------------------------------------------------------
consensus_6669#0 TTAAACCAACAAATATCTTTGTAGCATTTTTAGTCTCGTATTGTCATACATACGCGTTTT 780
consensus_6669#1 ---------------------------------------------------ACCCGGTTT 9
** ** ***
consensus_6669#0 TGAAGTCTATCTATCAGTTCACTTGACGTATATGAAAGTTTGTTGCCACTTTTCTTTACT 840
consensus_6669#1 -GAGGCC---CTCACAGGAC-CCTGCCGTATATGAAAGTTTGT-GCC-CCCTTCCTTAC- 61
** * * ** *** * * ** ***************** *** * *** ****
consensus_6669#0 CTGTTGAGAAACATCATTCTTATTTGAATGGTCTGTTTTATATTTACTTTGAAGGTATAA 900
consensus_6669#1 CTGTTGAGAA-CATCAATCCTTATTGAATGGGCGGGGGTAAATT-ACTTTGGGGG-ATAA 118
********** ***** ** * ******** * * ** *** ****** ** ****
consensus_6669#0 TCTATAATATTTTCTGATCGGAATTTCATTATTATTTGTATTCTTTGACTACTATTATGC 960
consensus_6669#1 ACTATAATAATTTCTGAGCGGAAGTCA--TAATAAATGTAATCTT-GACTACCAATATGC 175
******** ******* ***** * ** ** **** **** ****** * *****
consensus_6669#0 TGTATCCATGTTCTATGCTACAAATTACTTCATACATTTTATTTCCCTCAAAATCATCAT 1020
consensus_6669#1 TGTATCCATGT-CTATGCTACAAATTACNTCATACATTTTATTTCCCTCAAAATCATCAT 234
*********** **************** *******************************
consensus_6669#0 TTATTAATGACTGAAACATTTCTTTATGACTGCAATTTTTTTACTTTTGAAATGAGTTGT 1080
consensus_6669#1 TTATTAATGACTGAAACATTTCTTTATGACTGCAATTTTTTTACTTTTGAAATGAGTTGT 294
************************************************************
consensus_6669#0 GATTACCTCATTGTCCAAGTCTTTTCCTTTTGGTTTCTACATCTATTTATCTTCATTTCA 1140
consensus_6669#1 GATTACCTCATTGTCCAAGTCTTTTCCTTTTGGTTTCTACATCTATTTATCTTCATTTCA 354
************************************************************
consensus_6669#0 GTAAACAAAAATGAAATAAAACTT 1164
consensus_6669#1 GTAAACAAAAATGAAATAAAACT- 377
***********************
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||