cluster # 6672

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 6672 cluster # 6672 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6672#0 length = 553 sequences # 1

consensus_6672#1 length = 254 sequences # 3

consensusID : consensus_6672#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 553
fasta sequence

                              [TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTCGNAATGCAATTGATATATTTCTTCATTCTGAATAAATCAAAACAAGTTACTGGATTCCACTCTACATTTCGACCACCGTTAGCAGTTTCATTTACTGCTACTGTCCCACTAGTGAGCCTGATAAGGTCACTGAAGCAAAATTTTTAATTAAAAATCATAAAAATAACACAAGCAAAAAGATTCTTAAGCTAATAGTTAAATACATAACTTTATGTTTCAATGAATGGAACTTATAATATAAAAAACTATGGGTAAAGAAGTTATTGGATGAACAAAGAGAACAAAATGAGTCAAAACTATGGTACAAAACCTGGAATCTCATAAATAAATTGTACAAAAACTATCTCCTTAGCTCGAAGTTCACACATAAGATGAGTTTATTGTGTTTAAAGTATCAATACTTGAGGGATTAATAATAGTTGGCAACTCAACGATGACACTGGATTTATTTGGAATGTTATCCGGCTTTTGTGTGTCATCAGGATCGACCAAGC]

[+] EMBL AW016975             [TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTCGNAATGCAATTGATATATTTCTTCATTCTGAATAAATCAAAACAAGTTACTGGATTCCACTCTACATTTCGACCACCGTTAGCAGTTTCATTTACTGCTACTGTCCCACTAGTGAGCCTGATAAGGTCACTGAAGCAAAATTTTTAATTAAAAATCATAAAAATAACACAAGCAAAAAGATTCTTAAGCTAATAGTTAAATACATAACTTTATGTTTCAATGAATGGAACTTATAATATAAAAAACTATGGGTAAAGAAGTTATTGGATGAACAAAGAGAACAAAATGAGTCAAAACTATGGTACAAAACCTGGAATCTCATAAATAAATTGTACAAAAACTATCTCCTTAGCTCGAAGTTCACACATAAGATGAGTTTATTGTGTTTAAAGTATCAATACTTGAGGGATTAATAATAGTTGGCAACTCAACGATGACACTGGATTTATTTGGAATGTTATCCGGCTTTTGTGTGTCATCAGGATCGACCAAGC]




>consensus_6672#0
TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTCG
NAATGCAATTGATATATTTCTTCATTCTGAATAAATCAAAACAAGTTACTGGATTCCACT
CTACATTTCGACCACCGTTAGCAGTTTCATTTACTGCTACTGTCCCACTAGTGAGCCTGA
TAAGGTCACTGAAGCAAAATTTTTAATTAAAAATCATAAAAATAACACAAGCAAAAAGAT
TCTTAAGCTAATAGTTAAATACATAACTTTATGTTTCAATGAATGGAACTTATAATATAA
AAAACTATGGGTAAAGAAGTTATTGGATGAACAAAGAGAACAAAATGAGTCAAAACTATG
GTACAAAACCTGGAATCTCATAAATAAATTGTACAAAAACTATCTCCTTAGCTCGAAGTT
CACACATAAGATGAGTTTATTGTGTTTAAAGTATCAATACTTGAGGGATTAATAATAGTT
GGCAACTCAACGATGACACTGGATTTATTTGGAATGTTATCCGGCTTTTGTGTGTCATCA
GGATCGACCAAGC

consensusID : consensus_6672#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 254
fasta sequence

                              [ATTGATATATTTCTTCATTCTGAATAAATCAAAACAAGTTACTGGATTCCACTCTACATCTCGACCACCGTTAGCAGTTTCATTTACTGCTACTGTCCCACTAGTGAGCCTGATAAGGTCACTGAAGCAAAATTTTTAATTAAAAATCATAAAAATAACACAAGCAAAAAGATTCTTAAGCTAATAGTTAAATACATAACTTTATGTTTCAATGAATGGAACTTATAATATAAAAAACCCCTCGTGCCGAATTC]

[+] EMBL CD079673             [ATTGATATATTTCTTCATTCTGAATAAATCAAAACAAGTTACTGGATTCCACTCTACATCTCGACCACCGTTAGCAGTTTCATTTACTGCTACTGTCCCACTAGTGAGCCTGATAAGGTCACTGAAGCAAA                                                                                                                           ]
[-] EMBL CD080494             [ TTGATATATTTCTTCATTCTGAATAAATCAAAACAAGTTACTGGATTCCACTCTACATCTCGACCACCGTTAGCAGTTTCATTTACTGCTACTGTCCCACTAGTGAGCCTGATAAGGTCACTGAAGCAAAATTTTTAATTAAAAATCATAAAAATAACACAAGCAAAAAGATTCTTAAGCTAATAGTTAAATACATAACTTTATGTTTCAATGAATGGAACTTATAATATAAAAAACCCCTCGTGCCGAATTC]
[-] EMBL CD073933             [ TTGATATATTTCTTCATTCTGAATAAATCAAAACAAGTTACTGGATTCCACTCTACATCTCGACCACCGTTAGCAGTTTCATTTACTGCTACTGTCCCACTAGTGAGCCTAATAAGGTCACTGAAGCAAAATTTTTAATTAAAAGTAAAAAAAAncatc                                                                                              ]




>consensus_6672#1
ATTGATATATTTCTTCATTCTGAATAAATCAAAACAAGTTACTGGATTCCACTCTACATC
TCGACCACCGTTAGCAGTTTCATTTACTGCTACTGTCCCACTAGTGAGCCTGATAAGGTC
ACTGAAGCAAAATTTTTAATTAAAAATCATAAAAATAACACAAGCAAAAAGATTCTTAAG
CTAATAGTTAAATACATAACTTTATGTTTCAATGAATGGAACTTATAATATAAAAAACCC
CTCGTGCCGAATTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6672#0      TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTCG 60
consensus_6672#1      ------------------------------------------------------------
                                                                                  

consensus_6672#0      NAATGCAATTGATATATTTCTTCATTCTGAATAAATCAAAACAAGTTACTGGATTCCACT 120
consensus_6672#1      -------ATTGATATATTTCTTCATTCTGAATAAATCAAAACAAGTTACTGGATTCCACT 53
                             *****************************************************

consensus_6672#0      CTACATTTCGACCACCGTTAGCAGTTTCATTTACTGCTACTGTCCCACTAGTGAGCCTGA 180
consensus_6672#1      CTACATCTCGACCACCGTTAGCAGTTTCATTTACTGCTACTGTCCCACTAGTGAGCCTGA 113
                      ****** *****************************************************

consensus_6672#0      TAAGGTCACTGAAGCAAAATTTTTAATTAAAAATCATAAAAATAACACAAGCAAAAAGAT 240
consensus_6672#1      TAAGGTCACTGAAGCAAAATTTTTAATTAAAAATCATAAAAATAACACAAGCAAAAAGAT 173
                      ************************************************************

consensus_6672#0      TCTTAAGCTAATAGTTAAATACATAACTTTATGTTTCAATGAATGGAACTTATAATATAA 300
consensus_6672#1      TCTTAAGCTAATAGTTAAATACATAACTTTATGTTTCAATGAATGGAACTTATAATATAA 233
                      ************************************************************

consensus_6672#0      AAAACTATGGGTAAAGAAGTTATTGGATGAACAAAGAGAACAAAATGAGTCAAAACTATG 360
consensus_6672#1      AAAACCCCTCGTGCCGAATTC--------------------------------------- 254
                      *****     **   *** *                                        

consensus_6672#0      GTACAAAACCTGGAATCTCATAAATAAATTGTACAAAAACTATCTCCTTAGCTCGAAGTT 420
consensus_6672#1      ------------------------------------------------------------
                                                                                  

consensus_6672#0      CACACATAAGATGAGTTTATTGTGTTTAAAGTATCAATACTTGAGGGATTAATAATAGTT 480
consensus_6672#1      ------------------------------------------------------------
                                                                                  

consensus_6672#0      GGCAACTCAACGATGACACTGGATTTATTTGGAATGTTATCCGGCTTTTGTGTGTCATCA 540
consensus_6672#1      ------------------------------------------------------------
                                                                                  

consensus_6672#0      GGATCGACCAAGC 553
consensus_6672#1      -------------