cluster # 6679

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Schistosoma mansoni
cluster # 6679 cluster # 6679 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6679#0 length = 904 sequences # 2

consensus_6679#1 length = 320 sequences # 1
consensus_6679#2 length = 259 sequences # 1

consensusID : consensus_6679#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 904
fasta sequence

                              [ATTGACTTTAAATATAAACAGTATCTACCCTCATCATTTGAATCAAATCTGCGTCAACGCAACAGTGCTAAACTATTGTCTGCTACTAATGAAAATGTGTCTGATATGCAGCCTTCCGGGTCCATAATTGCTCGAAATTTAATAAATGCTGGTCGAACTTTGCTTTCTAAGGTATACACGCGGTTGTCTCGAACACAACTGTTCAGTATTCTATCTTCAGAAATACCCTATGCTTCGACAGCACACCTTTTCTCAACTGCTACAGATATTGGCTACGCAAACGACCTGGACTTCGATAAACCGTTAGTACGAACGAGTGGTCAAGTTATTATCTGGGCAACAGAAATCTTAGCTTGTTTGACACTGGCCGCTTACAATGAAGACCAATTTGGTTCGGTTCAACAGACTCTTGGGCGGATCTTACTACTTTTTGCTGATGGATTAGAAGCAGTTGAAAAGCACTTGAGGTTCGTCGGTTTGCTCTCCACTCAGTACAAACAAGCAGTAAACTGTCCAGTTTCTGACAGCTTCTACACGAGTACAATATTATCCGCTGGACATCTTCAAACTCCATTAAAAAGTTTGAATAAACTTTCAGGCGATTCATTCCCCTCAAACGATTTATGTAAATTAACATATTATCGTTTTGCATCCGATGCCAGTCTTCCATGGCGTGTTTATGCAACGTTNTGTTGGGCTGTAACAAACTGCCTAAGTCAATATGATGGTTGTTTTGCAACCTTATCCCTGGACAATAAGTCAAAGGAAAGATTACAACTACTGAAAGCATCTTGTACAATAAAAGAAAACCCAAGTTAACATACATTTTTTGTTATCTTTTTTATGATACAGATTCACATGCATTTACTATTAAACTTTCCCAAAGATAATAAATAAAAGTATG]

[+] EMBL CD079723             [ATTGACTTTAAATATAAACAGTATCTACCCTCATCATTTGAATCAAATCTGCGTCAACGCAACAGTGCTAAACTATTGTCTGCTACTAATGAAAATGTGTCTGATATGCAGCCTTCCGGGTCCATAATTGCTCGAAATTTAATAAATGCTGGTCGAACTTTGCTTTCTAAGGTATACACGCGGTTGTCTCGAACACAACTGTTCAGTATTCTATCTTCAGAAATACCCTATGCTTCGACAGCACACCTTTTCTCAACTGCTACAGATATTGGCTACGCAAACGACCTGGACTTCGATAAACCGTTAGTACGAACGAGTGGTCAAGTTATTATCTGGGCAACAGAAATCTTAGCTTGTTTGACACTGGCCGCTTACAATGAAGACCAATTTGGTTCGGTTCAACAGACTCTTGGGCGGATCTTACTACTTTTTGCTGATGGATTAGAAGCAGTTGAAAAGCACTTGAGGTTCGTCGGTTTGCTCTCCACTCAGTACAAACAAGCAGTAAACTGTCCAGTTTCTGACAGCTTCTACACGAGTACAATATTATCCGCTGGACATCTTCAAACTCCATTAAAAAGTTTGAATAAACTTTCAGGCGATTCATTCCCCTCAAACGATTTATGTAAATTAACATATTATCGTTTTGCATCCGATGCCAGTCTTCCATGGCGTGTTTATGCAACGTTNTGTTGGGCTGTAACA                                                                                                                                                                                                       ]
[-] EMBL CD073981             [                                                                                                                                                                                                                                                                                           ACCTGGACTTCGATAAACCGTTAGTACGAACGAGTGGTCAAGTTATTATCTGGGCAACAGAAATCTTAGCTTGTTTGACACTGGCCGCTTACAATGAAGACCAATTTGGTTCGGTTCAACAGACTCTTGGGCGGATCTTACTACTTTTTGCTGATGGATTAGAAGCAGTTGAAAAGCACTTGAGGTTCGTCGGTTTGCTCTCCACTCAGTACAAACAAGCAGTAAACTGTCCAGTTTCTGACAGCTTCTACACGAGTACAATATTATCCGCTGGACATCTTCAAACTCCATTAAAAAGTTTGAATAAACTTTCAGGCGATTCATTCCCCTCAAACGATTTATGTAAATTAACATATTATCGTTTTGCATCCGATGCCAGTCTTCCATGGCGTGTTTATGCAACGTTTTGTTGGGCTGTAACAAACTGCCTAAGTCAATATGATGGTTGTTTTGCAACCTTATCCCTGGACAATAAGTCAAAGGAAAGATTACAACTACTGAAAGCATCTTGTACAATAAAAGAAAACCCAAGTTAACATACATTTTTTGTTATCTTTTTTATGATACAGATTCACATGCATTTACTATTAAACTTTCCCAAAGATAATAAATAAAAGTATG]




>consensus_6679#0
ATTGACTTTAAATATAAACAGTATCTACCCTCATCATTTGAATCAAATCTGCGTCAACGC
AACAGTGCTAAACTATTGTCTGCTACTAATGAAAATGTGTCTGATATGCAGCCTTCCGGG
TCCATAATTGCTCGAAATTTAATAAATGCTGGTCGAACTTTGCTTTCTAAGGTATACACG
CGGTTGTCTCGAACACAACTGTTCAGTATTCTATCTTCAGAAATACCCTATGCTTCGACA
GCACACCTTTTCTCAACTGCTACAGATATTGGCTACGCAAACGACCTGGACTTCGATAAA
CCGTTAGTACGAACGAGTGGTCAAGTTATTATCTGGGCAACAGAAATCTTAGCTTGTTTG
ACACTGGCCGCTTACAATGAAGACCAATTTGGTTCGGTTCAACAGACTCTTGGGCGGATC
TTACTACTTTTTGCTGATGGATTAGAAGCAGTTGAAAAGCACTTGAGGTTCGTCGGTTTG
CTCTCCACTCAGTACAAACAAGCAGTAAACTGTCCAGTTTCTGACAGCTTCTACACGAGT
ACAATATTATCCGCTGGACATCTTCAAACTCCATTAAAAAGTTTGAATAAACTTTCAGGC
GATTCATTCCCCTCAAACGATTTATGTAAATTAACATATTATCGTTTTGCATCCGATGCC
AGTCTTCCATGGCGTGTTTATGCAACGTTNTGTTGGGCTGTAACAAACTGCCTAAGTCAA
TATGATGGTTGTTTTGCAACCTTATCCCTGGACAATAAGTCAAAGGAAAGATTACAACTA
CTGAAAGCATCTTGTACAATAAAAGAAAACCCAAGTTAACATACATTTTTTGTTATCTTT
TTTATGATACAGATTCACATGCATTTACTATTAAACTTTCCCAAAGATAATAAATAAAAG
TATG

consensusID : consensus_6679#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 320
fasta sequence

                              [TTCGCCGGTTGGCTCTCCACTCAGTACAAACAAGCAGTAAACTGTCCAGTTTCTGACAGCTTCTACACAAGTCCATTTTTATCCGCTGGACATCTTCAAACTCCGTGAAAAAGTTGGAATAAACTTTCAGGCGATTCATTCCCCTCAAACGATTTATGTAAATTAACATATTATCGTTTTGCATCCGATGCCAGTCTTCCATGGCGTGTTTATGCAACGTTTTGTTGGGCTGTAACAAACTGCCTAAGTCAATATGATGGTTGTTTTGCGTAAGTCCCGCTATTTTATTATGTAACCACTTCCTCCTTATGCATAAAACT]

[+] EMBL CD122253             [TTCGCCGGTTGGCTCTCCACTCAGTACAAACAAGCAGTAAACTGTCCAGTTTCTGACAGCTTCTACACAAGTCCATTTTTATCCGCTGGACATCTTCAAACTCCGTGAAAAAGTTGGAATAAACTTTCAGGCGATTCATTCCCCTCAAACGATTTATGTAAATTAACATATTATCGTTTTGCATCCGATGCCAGTCTTCCATGGCGTGTTTATGCAACGTTTTGTTGGGCTGTAACAAACTGCCTAAGTCAATATGATGGTTGTTTTGCGTAAGTCCCGCTATTTTATTATGTAACCACTTCCTCCTTATGCATAAAACT]




>consensus_6679#1
TTCGCCGGTTGGCTCTCCACTCAGTACAAACAAGCAGTAAACTGTCCAGTTTCTGACAGC
TTCTACACAAGTCCATTTTTATCCGCTGGACATCTTCAAACTCCGTGAAAAAGTTGGAAT
AAACTTTCAGGCGATTCATTCCCCTCAAACGATTTATGTAAATTAACATATTATCGTTTT
GCATCCGATGCCAGTCTTCCATGGCGTGTTTATGCAACGTTTTGTTGGGCTGTAACAAAC
TGCCTAAGTCAATATGATGGTTGTTTTGCGTAAGTCCCGCTATTTTATTATGTAACCACT
TCCTCCTTATGCATAAAACT

consensusID : consensus_6679#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 259
fasta sequence

                              [CGCTCTAATCTAGTAAAGCACAGTGCCTACTACCTTGTTCATTCCGTTGCCCCACCTTATTTTGACAAATACTTATCATAATTCAACTAAAATCTATTACTCAGTAGTGTCTATTTTTCTTTTCTAGGTATACACGCGGTTGTCTCGAGCACAACTGTTCAGTATTCTATCTTCAGAAATACCCTATGCTTCGACAGCACACCTTTTCTCAACTGCTACAGATATTGGCTACCCAAACGACCTGGACTTCGATAAACCG]

[-] EMBL CD165297             [CGCTCTAATCTAGTAAAGCACAGTGCCTACTACCTTGTTCATTCCGTTGCCCCACCTTATTTTGACAAATACTTATCATAATTCAACTAAAATCTATTACTCAGTAGTGTCTATTTTTCTTTTCTAGGTATACACGCGGTTGTCTCGAGCACAACTGTTCAGTATTCTATCTTCAGAAATACCCTATGCTTCGACAGCACACCTTTTCTCAACTGCTACAGATATTGGCTACCCAAACGACCTGGACTTCGATAAACCG]




>consensus_6679#2
CGCTCTAATCTAGTAAAGCACAGTGCCTACTACCTTGTTCATTCCGTTGCCCCACCTTAT
TTTGACAAATACTTATCATAATTCAACTAAAATCTATTACTCAGTAGTGTCTATTTTTCT
TTTCTAGGTATACACGCGGTTGTCTCGAGCACAACTGTTCAGTATTCTATCTTCAGAAAT
ACCCTATGCTTCGACAGCACACCTTTTCTCAACTGCTACAGATATTGGCTACCCAAACGA
CCTGGACTTCGATAAACCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6679#0      ATTGACTTTAAATATAAACAGTATCTACCCTCATCATTTGAATCAAATCTGCGTCAACGC 60
consensus_6679#1      ------------------------------------------------------------
consensus_6679#2      ------------------------------------------------------------
                                                                                  

consensus_6679#0      AACAGTGCTAAACTATTGTCTGCTACTAATGAAAATGTGTCTGATATGCAGCCTTCCGGG 120
consensus_6679#1      ------------------------------------------------------------
consensus_6679#2      ------------------------------------------------------------
                                                                                  

consensus_6679#0      TCCATAATTGCTCGAAATTTAATAAATGCTGGTCGAACTTTGCTTTCTAAGGTATACACG 180
consensus_6679#1      ------------------------------------------------------------
consensus_6679#2      ------------------------------------------------------------
                                                                                  

consensus_6679#0      CGGTTGTCTCGAACACAACTGTTCAGTATTCTATCTTCAGAAATACCCTATGCTTCGACA 240
consensus_6679#1      ------------------------------------------------------------
consensus_6679#2      ------------------------------------------------------------
                                                                                  

consensus_6679#0      GCACACCTTTTCTCAACTGCTACAGATATTGGCTACGCAAACGACCTGGACTTCGATAAA 300
consensus_6679#1      ------------------------------------------------------------
consensus_6679#2      ------------------------------------------------------------
                                                                                  

consensus_6679#0      CCGTTAGTACGAACGAGTGGTCAAGTTATTATCTGGGCAACAGAAATCTTAGCTTGTTTG 360
consensus_6679#1      ------------------------------------------------------------
consensus_6679#2      ------------------------------------------------------------
                                                                                  

consensus_6679#0      ACACTGGCCGCTTACAATGAAGACCAATTTGGTTCGGTTCAACAGACTCTTGGGCGGATC 420
consensus_6679#1      ------------------------------------------------------------
consensus_6679#2      ------------------------------------------------------------
                                                                                  

consensus_6679#0      TTACTACTTTTTGCTGATGGATTAGAAGCAGTTGAAAAGCACTTGAGGTTCGTCGGTTTG 480
consensus_6679#1      ------------------------------------------------TTCGCCGGTTGG 12
consensus_6679#2      ------------------------------------------------------------
                                                                                  

consensus_6679#0      CTCTCCACTCAGTACAAACAAGCAGTAAACTGTCCAGTTTCTGACAGCTTCTACACGAGT 540
consensus_6679#1      CTCTCCACTCAGTACAAACAAGCAGTAAACTGTCCAGTTTCTGACAGCTTCTACACAAGT 72
consensus_6679#2      ---------CGCTCTAATC---TAGTAAA--GCACAGTGCCTACTACCTTGTTCAT---T 43
                               *  *  ** *    ******  *  ****  **   * *** * **    *

consensus_6679#0      ACAATATTATCCGCTGGACATCTTCAAACTCCATTAAAAAGTTTGAATAAACTTTCAGGC 600
consensus_6679#1      CCATTTTTATCCGCTGGACATCTTCAAACTCCGTGAAAAAGTTGGAATAAACTTTCAGGC 132
consensus_6679#2      CCGTTGCC--CCACCTTATTTTGACAAATACT-TATCATAATTCAACTAAAATCT---AT 97
                       *  *     ** *   *  *   ****  *  *   * * **  * **** * *     

consensus_6679#0      GATTCATTCCCCTCAAACGAT-TTATGTAAATTAACATATTATCGTTTTGCATCCGATGC 659
consensus_6679#1      GATTCATTCCCCTCAAACGAT-TTATGTAAATTAACATATTATCGTTTTGCATCCGATGC 191
consensus_6679#2      TACTCAGTAGTGTCTATTTTTCTTTTCTAGGTATACACGCGGTTGTCTCGAGCACAA--- 154
                       * *** *    ** *    * ** * **  *  ***     * ** * *    * *   

consensus_6679#0      CAGTCTTCCATGGCGTGTTTATGCA-ACGTTNTGTTGGGCTGTAACAAACTGCCTAAGTC 718
consensus_6679#1      CAGTCTTCCATGGCGTGTTTATGCA-ACGTTTTGTTGGGCTGTAACAAACTGCCTAAGTC 250
consensus_6679#2      CTGTTCAGTATTCTATCTTCAGAAATACCCTATGCTTCGACAGCACACCTTTTCTCAACT 214
                      * **     **    * ** *   * **  * ** *  *     ***   *  ** *   

consensus_6679#0      AATATGATGGTTGTTTTGCAACCTTATCCCTGGACAATAAGTCAAAGGAAAGATTACAAC 778
consensus_6679#1      AATATGATGGTTGTTTTGCG----TAAGTCCCGCTATTTTATTATGTAACCACTTCCTCC 306
consensus_6679#2      GCTACAGATATTGGCTACCC----AAACGACCTGGACTTCGATA---AACCG-------- 259
                        **      ***  *  *      *         * *     *    *           

consensus_6679#0      TACTGAAAGCATCTTGTACAATAAAAGAAAACCCAAGTTAACATACATTTTTTGTTATCT 838
consensus_6679#1      TTATGCATAAAACT---------------------------------------------- 320
consensus_6679#2      ------------------------------------------------------------
                                                                                  

consensus_6679#0      TTTTTATGATACAGATTCACATGCATTTACTATTAAACTTTCCCAAAGATAATAAATAAA 898
consensus_6679#1      ------------------------------------------------------------
consensus_6679#2      ------------------------------------------------------------
                                                                                  

consensus_6679#0      AGTATG 904
consensus_6679#1      ------
consensus_6679#2      ------