cluster # 6683

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Schistosoma mansoni
cluster # 6683 cluster # 6683 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6683#0 length = 667 sequences # 2

consensus_6683#1 length = 428 sequences # 1
consensus_6683#2 length = 298 sequences # 1

consensusID : consensus_6683#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 667
fasta sequence

                              [ATTTGGCACGAGGCAAATTGAGAATTTTTCTCACTTTTGTGAAGTCATCATTCAATCAGTGTCGAAGGTAAAAAATATTTATTTGACCACTGGAGAAGACGCCCAGCATCCAGATGAACAAATAGAAAAGTTTAATATGTTAAAAGGGGATTTAGAAAAGCATTCAGTTACTTTTGAGTGGACATTCTCAGATACCTTACATGATCGAGAGATACGATTTGATAGTGGATGGATTGTTAAAATTGGTCGTGGGTTGGATTATATACGTCGACCTGAACATAAATTTTGTGGTCTCGGTGTACATGACTATGACTTTCGTACATGTTCTGCAACAACTATTGACATATTTCATTCTTCTATTGTACGTCAAGATACATAAAGAAATAAATATGAACTTTTCTTTTTAAAAACTACCATAGTATATAATATTATTATCTATTTACCCTAAAGATAAATCAGTAAGGGGATAATAAAACATCTTGACGGCTTCAAACCTACAACATTTCGATAACTTTCCATTTTCATTAGTCTTTCATCTTTTCTAAAAAAAAAGAAATTATGTTACAGGATCATTTTTTACTTGAACAAGTTTTGTTTTTAATATTTTTTACTCATTTGGTCATTGTATTTATGTGTTAGATCGGAGAA-CCATTTAATTNTGAGATTT]

[+] EMBL CD079782             [ATTTGGCACGAGGCAAATTGAGAATTTTTCTCACTTTTGTGAAGTCATCATTCAATCAGTGTCGAAGGTAAAAAATATTTATTTGACCACTGGAGAAGACGCCCAGCATCCAGATGAACAAATAGAAAAGTTTAATATGTTAAAAGGGGATTTAGAAAAGCATTCAGTTACTTTTGAGTGGACATTCTCAGATACCTTACATGATCGAGAGATACGATTTGATAGTGGATGGATTGTTAAAATTGGTCGTGGGTTGGATTATATACGTCGACCTGAACATAAATTTTGTGGTCTCGGTGTACATGACTATGACTTTCGTACATGTTCTGCAACAACTATTGACATATTTCATTCTTCTATTGTACGTCAAGATACATAAAGAAATAAATATGAACTTTTCTTTTTAAAAACTACCATAGTATATAATATTATTATCTATTTACCCTAAAGATAAATCAGTAAGGGGATAATAAAACATCTTGACGGCTTCAAACCTACAACATTTCGATAACTTTCCATTTTCATTAGTCTTTCATCTTTTCTAAAAAAAAAGAAATTATGTTACAGGATCATTTTTTACTTGAACAAGTTTTGTTTTTAATATTTTTTACTCATTTGGTCATTGTATTTATGTGTTAGATCGGAGAA CCATTTAATTNTGAGATT ]
[-] EMBL CD074040             [              AAATTGAGAATTTTTCTCACTTTTGTGAAGTCATCATTCAATCAGTGTCGAAGGTAAAAAATATTTATTTGACCACTGGAGAAGACGCCCAGCATCCAGATGAACAAATAGAAAAGTTTAATATGTTAAAAGGGGATTTAGAAAAGCATTCAGTTACTTTTGAGTGGACATTCTCAGATACCTTACATGATCGAGAGATACGATTTGATAGTGGATGGATTGTTAAAATTGGTCGTGGGTTGGATTATATACGTCGACCTGAACATAAATTTTGTGGTCTCGGTGTACATGACTATGACTTTCGTACATGTTCTGCAACAACTATTGACATATTTCATTCTTCTATTGTACGTCAAGATACATAAAGAAATAAATATGAACTTTTCTTTTTAAAAACTACCATAGTATATAATATTATTATCTATTTACCCTAAAGATAAATCAGTAAGGGGATAATAAAACATCTTGACGGCTTCAAACCTACAACATTTCGATAACTTTCCATTTTCATTAGTCTTTCATCTTTTCTAAAAAAAAAGAAATTATGTTACAGGATCATTTTTTACTTGAACAAGTTTTGTTTTTAATATTTTTTACTCATTTGGTCATTGTATTTATGTGTTAGATCGGAGAACCCATTTAATTTTGAGATTT]




>consensus_6683#0
ATTTGGCACGAGGCAAATTGAGAATTTTTCTCACTTTTGTGAAGTCATCATTCAATCAGT
GTCGAAGGTAAAAAATATTTATTTGACCACTGGAGAAGACGCCCAGCATCCAGATGAACA
AATAGAAAAGTTTAATATGTTAAAAGGGGATTTAGAAAAGCATTCAGTTACTTTTGAGTG
GACATTCTCAGATACCTTACATGATCGAGAGATACGATTTGATAGTGGATGGATTGTTAA
AATTGGTCGTGGGTTGGATTATATACGTCGACCTGAACATAAATTTTGTGGTCTCGGTGT
ACATGACTATGACTTTCGTACATGTTCTGCAACAACTATTGACATATTTCATTCTTCTAT
TGTACGTCAAGATACATAAAGAAATAAATATGAACTTTTCTTTTTAAAAACTACCATAGT
ATATAATATTATTATCTATTTACCCTAAAGATAAATCAGTAAGGGGATAATAAAACATCT
TGACGGCTTCAAACCTACAACATTTCGATAACTTTCCATTTTCATTAGTCTTTCATCTTT
TCTAAAAAAAAAGAAATTATGTTACAGGATCATTTTTTACTTGAACAAGTTTTGTTTTTA
ATATTTTTTACTCATTTGGTCATTGTATTTATGTGTTAGATCGGAGAACCATTTAATTNT
GAGATTT

consensusID : consensus_6683#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 428
fasta sequence

                              [TAATATGTTAAAAGGGGATCTAGAGAAGCATTCAGTTACTTTTGAGTGGACATTCTCAGATACCTTACATGATCGAGAGATACGATTTGATAGTGAATGGTGTGAAAGGAAGGTGCTACTGGCTACGGTTACAAGAAGGTTTTTGGAAGATTTCTTGAAGATGGTACAGTTGGCAAAGTTTGGGTGGAAGATCCGTATATCAGAAATAGTTATCCAACTGAGAATTTTTCTCACTTTCGTGAAGTCATCACTCAATCAGTCTCGAAGGTAAACAATATGTATTTGTCCACTGGAGCAGACCCCCCAGCATCCAGATGAACAAATAGAAAAGTTTAATATGTTAAAAGGGGATTTAGAAAAGCATTCAGTTACTTTTGAGTGGACATTCTCAGATACCTACTGATCGAGAGATACGATTTGATAGTGAA]

[-] EMBL CD166840             [TAATATGTTAAAAGGGGATCTAGAGAAGCATTCAGTTACTTTTGAGTGGACATTCTCAGATACCTTACATGATCGAGAGATACGATTTGATAGTGAATGGTGTGAAAGGAAGGTGCTACTGGCTACGGTTACAAGAAGGTTTTTGGAAGATTTCTTGAAGATGGTACAGTTGGCAAAGTTTGGGTGGAAGATCCGTATATCAGAAATAGTTATCCAACTGAGAATTTTTCTCACTTTCGTGAAGTCATCACTCAATCAGTCTCGAAGGTAAACAATATGTATTTGTCCACTGGAGCAGACCCCCCAGCATCCAGATGAACAAATAGAAAAGTTTAATATGTTAAAAGGGGATTTAGAAAAGCATTCAGTTACTTTTGAGTGGACATTCTCAGATACCTACTGATCGAGAGATACGATTTGATAGTGAA]




>consensus_6683#1
TAATATGTTAAAAGGGGATCTAGAGAAGCATTCAGTTACTTTTGAGTGGACATTCTCAGA
TACCTTACATGATCGAGAGATACGATTTGATAGTGAATGGTGTGAAAGGAAGGTGCTACT
GGCTACGGTTACAAGAAGGTTTTTGGAAGATTTCTTGAAGATGGTACAGTTGGCAAAGTT
TGGGTGGAAGATCCGTATATCAGAAATAGTTATCCAACTGAGAATTTTTCTCACTTTCGT
GAAGTCATCACTCAATCAGTCTCGAAGGTAAACAATATGTATTTGTCCACTGGAGCAGAC
CCCCCAGCATCCAGATGAACAAATAGAAAAGTTTAATATGTTAAAAGGGGATTTAGAAAA
GCATTCAGTTACTTTTGAGTGGACATTCTCAGATACCTACTGATCGAGAGATACGATTTG
ATAGTGAA

consensusID : consensus_6683#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 298
fasta sequence

                              [TCGTCGGGCACACTATTGCATATTTCATTCTTCTATTGTCGTCGTCTAAGAATAATATGACTTTCTTTTAAAACTACATGTATATAATATTATTATCTATTTACCCTAAAGTAAATCAGTAAAGGGATAATAAAACATCTTGACGGCTTCAAACCTACAACATTTCGATAACTTTCCATTTTCATTAGTCTTTCATCTTTTCTAAAAAAAAAGAAATTATGTTACAGGATCATTTTTTACTTGAACAAGTTTTGTTTTTAATATTTTTTACTCATTTGGTCATTGTATTTACAGATGA]

[-] EMBL AA791368             [TCGTCGGGCACACTATTGCATATTTCATTCTTCTATTGTCGTCGTCTAAGAATAATATGACTTTCTTTTAAAACTACATGTATATAATATTATTATCTATTTACCCTAAAGTAAATCAGTAAAGGGATAATAAAACATCTTGACGGCTTCAAACCTACAACATTTCGATAACTTTCCATTTTCATTAGTCTTTCATCTTTTCTAAAAAAAAAGAAATTATGTTACAGGATCATTTTTTACTTGAACAAGTTTTGTTTTTAATATTTTTTACTCATTTGGTCATTGTATTTACAGATGA]




>consensus_6683#2
TCGTCGGGCACACTATTGCATATTTCATTCTTCTATTGTCGTCGTCTAAGAATAATATGA
CTTTCTTTTAAAACTACATGTATATAATATTATTATCTATTTACCCTAAAGTAAATCAGT
AAAGGGATAATAAAACATCTTGACGGCTTCAAACCTACAACATTTCGATAACTTTCCATT
TTCATTAGTCTTTCATCTTTTCTAAAAAAAAAGAAATTATGTTACAGGATCATTTTTTAC
TTGAACAAGTTTTGTTTTTAATATTTTTTACTCATTTGGTCATTGTATTTACAGATGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6683#0      ATTTGGCACGAGGCAAATTGAGAATTTTTCTCACTTTTGTGAAGTCATCATTCAATCAGT 60
consensus_6683#2      ------------------------------------------------------------
consensus_6683#1      ------------------------------------------------------------
                                                                                  

consensus_6683#0      GTCGAAGGTAAAAAATATTTATTTGACCACTGGAGAAGACGCCCAGCATCCAGATGAACA 120
consensus_6683#2      ------------------------------------------------------------
consensus_6683#1      ------------------------------------------------------------
                                                                                  

consensus_6683#0      AATAGAAAAGTTTAATATGTTAAAAGGGGATTTAGAAAAGCATTCAGTTACTTTTGAGTG 180
consensus_6683#2      ------------------------------------------------------------
consensus_6683#1      ------------------------------------------------------------
                                                                                  

consensus_6683#0      GACATTCTCAGATACCTTACATGATCGAGAGATACGATTTGATAGTGGATGGATTGTTAA 240
consensus_6683#2      ------------------------------------------------------------
consensus_6683#1      ------------------------------------------------------------
                                                                                  

consensus_6683#0      AATTGGTCGTGGGTTGGATTATATACGTCGACCTGAACATAAATTTTGTGGTCTCGGTGT 300
consensus_6683#2      ------------------------------------------------------------
consensus_6683#1      ------------------------------------------------------TAATAT 6
                                                                                  

consensus_6683#0      ACATGACTATGACTTTCGTACATGTTCTGCAACAACTA--TTGACATATTTCATTCTTCT 358
consensus_6683#2      ----------------------TCGTCGGGCACA-CTA--TTG-CATATTTCATTCTTCT 34
consensus_6683#1      GTTAAAAGGGGATCTAGAGAAGCATTCAGTTACTTTTGAGTGGACATTCTCAGATACCTT 66
                                               ** *  **   *   * * ***  *    *    *

consensus_6683#0      AT-TGTACGTCAAGATACATAAAGAAATAAA---TATGAACTTTTCTTTTTAAAAACTAC 414
consensus_6683#2      AT-TGT-CGT-------CGTCTAAGAATAA----TATGA--CTTTCTTTT--AAAACTAC 77
consensus_6683#1      ACATGATCGAGAGATACGATTTGATAGTGAATGGTGTGAAAGGAAGGTGCTACTGGCTAC 126
                      *  **  **          *     * * *    * ***        *        ****

consensus_6683#0      CATAGTATATAATATTATTATCTATTTACCCTAAA-GATA-AATCAGTAAGGGGATAATA 472
consensus_6683#2      -AT-GTATATAATATTATTATCTATTTACCCTAAA-G-TA-AATCAGTAAAGGGATAATA 132
consensus_6683#1      GGTTACAAGAAGGTTTTTGGAAGATTTCTTGAAGATGGTACAGTTGGCAAAGTTTGGGTG 186
                        *   *   *   ** *     ****     * * * ** * *  * ** *      * 

consensus_6683#0      AAACATCTTGACGGCTTCAA-ACCTACAACATTTCGATAACTTTCCATTTTCATTAGTCT 531
consensus_6683#2      AAACATCTTGACGGCTTCAA-ACCTACAACATTTCGATAACTTTCCATTTTCATTAGTCT 191
consensus_6683#1      GAAGATCCGTATATCAGAAATAGTTATCCAACTGAGAATTTTTCTCACTTTCGTGAAGTC 246
                       ** ***   *   *   ** *  **    * *  **    **  ** **** * *    

consensus_6683#0      TTCA-----TCTTTTCTAAAAAAAAAGAAATTATGTT-----ACAGGATCATTTTTTACT 581
consensus_6683#2      TTCA-----TCTTTTCTAAAAAAAAAGAAATTATGTT-----ACAGGATCATTTTTTACT 241
consensus_6683#1      ATCACTCAATCAGTCTCGAAGGTAAACAATATGTATTTGTCCACTGGAGCAGACCCCCCA 306
                       ***     **  *    **   *** **  * * **     ** *** **       * 

consensus_6683#0      TGAACAAGTTTTGTTTTTAATATTTTTTACTCATTTGGTCATTGTATTTATGTGTTAGAT 641
consensus_6683#2      TGAACAAGTTTTGTTTTTAATATTTTTTACTCATTTGGTCATTGTATTTACAGATGA--- 298
consensus_6683#1      GCATCCAGATGAACAAATAGAAAAGTTTAAT-ATGTTAAAAGGGGATTTAGAAAAGCATT 365
                        * * ** *       **  *   **** * ** *    *  * *****          

consensus_6683#0      CGGAGAACCATTTAATTNTGAGATTT---------------------------------- 667
consensus_6683#2      ------------------------------------------------------------
consensus_6683#1      CAGTTACTTTTGAGTGGACATTCTCAGATACCTACTGATCGAGAGATACGATTTGATAGT 425
                                                                                  

consensus_6683#0      ---
consensus_6683#2      ---
consensus_6683#1      GAA 428