cluster # 6690

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Schistosoma mansoni
cluster # 6690 cluster # 6690 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6690#0 length = 666 sequences # 2

consensus_6690#1 length = 167 sequences # 2

consensusID : consensus_6690#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 666
fasta sequence

                              [CGAGCCAAAAATTCGGCACGAGGGCGAAAATCCAAAGAAGAGCTGCCGTAAAACGTGCTCTTGATCTAAAGATGGCCCGATATCGAGCACCGTTTCACCAACTTCGAATACAATATGGAACAAATAAAGGGAAGAACTATGTCGAGGAGGAAGATCGCTTCTTAATCTGCATGCTTCACAAACTTGGTTTCGATCGTGACAATGTATATGATGACTTACGTCTTGCAGTTCGCTTAGCCCCACAGTTTCGATTTGATTGGTTTTTGCGATCTCGCACAGCAATGGAGCTACAAAGACGTTGCAGTACTCTTATTACTTTGATCGAGAGAGAAATATGTGACTTGGAAGACCGAACAAAACAGCGCAGTGGAGCAGGCGCGAATAATTTATCACTCACTCCTGCAAATTCCGGACCATCTAACACATCCACAGTATCCAACCAAAAGCGGAAGTCAACTTCAGCTGGTGGGATTGGCTCTGATTCAACTGCAGAAATGTCCGGAAACTCAAAGAAAAAGAAGGTCACTGCTTAAATAACAGTGATTTGTAAATGTCTCTGTCTTATATTCTTGTTGTAGGCCTCTTGCATTTGATTTTATGTACTCGTTTCCCCTGATTTCATACTGGTGTATTGTTTATCAAATCCTACATAAATAAAGATTTGTT]

[+] EMBL CD079808             [CGAGCCAAAAATTCGGCACGAGGGCGAAAATCCAAAGAAGAGCTGCCGTAAAACGTGCTCTTGATCTAAAGATGGCCCGATATCGAGCACCGTTTCACCAACTTCGAATACAATATGGAACAAATAAAGGGAAGAACTATGTCGAGGAGGAAGATCGCTTCTTAATCTGCATGCTTCACAAACTTGGTTTCGATCGTGACAATGTATATGATGACTTACGTCTTGCAGTTCGCTTAGCCCCACAGTTTCGATTTGATTGGTTTTTGCGATCTCGCACAGCAATGGAGCTACAAAGACGTTGCAGTACTCTTATTACTTTGATCGAGAGAGAAATATGTGACTTGGAAGACCGAACAAAACAGCGCAGTGGAGCAGGCGCGAATAATTTATCACTCACTCCTGCAAATTCCGGACCATCTAACACATCCACAGTATCCAACCAAAAGCGGAAGTCAACTTCAGCTGGTGGGATTGGCTCTGATTCAACTGCAGAAATGTCCGGAAACTCAAAGAAAAAGAAGGTCACTGCTTAAATAACAGTGATTTGTAAATGTCTCTGTCTTATATTCTTGTTGTAGGCCTCTTGCATTTGATTTTATGTACTCGTTTCCCCTGATTTCATACTGGTGTATTGTTTATCAAATCCTACATAAATAAAGATTTGT ]
[-] EMBL CD074066             [                                              CGTAAAACGTGCTCTTGATCTAAAGATGGCCCGATATCGAGCACCGTTTCACCAACTTCGAATACAATATGGAACAAATAAAGGGAAGAACTATGTCGAGGAGGAAGATCGCTTCTTAATCTGCATGCTTCACAAACTTGGTTTCGATCGTGACAATGTATATGATGACTTACGTCTTGCAGTTCGCTTAGCCCCACAGTTTCGATTTGATTGGTTTTTGCGATCTCGCACAGCAATGGAGCTACAAAGACGTTGCAGTACTCTTATTACTTTGATCGAGAGAGAAATATGTGACTTGGAAGACCGAACAAAACAGCGCAGTGGAGCAGGCGCGAATAATTTATCACTCACTCCTGCAAATTCCGGACCATCTAACACATCCACAGTATCCAACCAAAAGCGGAAGTCAACTTCAGCTGGTGGGATTGGCTCTGATTCAACTGCAGAAATGTCCGGAAACTCAAAGAAAAAGAAGGTCACTGCTTAAATAACAGTGATTTGTAAATGTCTCTGTCTTATATTCTTGTTGTAGGCCTCTTGCATTTGATTTTATGTACTCGTTTCCCCTGATTTCATACTGGTGTATTGTTTATCAAATCCTACATAAATAAAGATTTGTT]




>consensus_6690#0
CGAGCCAAAAATTCGGCACGAGGGCGAAAATCCAAAGAAGAGCTGCCGTAAAACGTGCTC
TTGATCTAAAGATGGCCCGATATCGAGCACCGTTTCACCAACTTCGAATACAATATGGAA
CAAATAAAGGGAAGAACTATGTCGAGGAGGAAGATCGCTTCTTAATCTGCATGCTTCACA
AACTTGGTTTCGATCGTGACAATGTATATGATGACTTACGTCTTGCAGTTCGCTTAGCCC
CACAGTTTCGATTTGATTGGTTTTTGCGATCTCGCACAGCAATGGAGCTACAAAGACGTT
GCAGTACTCTTATTACTTTGATCGAGAGAGAAATATGTGACTTGGAAGACCGAACAAAAC
AGCGCAGTGGAGCAGGCGCGAATAATTTATCACTCACTCCTGCAAATTCCGGACCATCTA
ACACATCCACAGTATCCAACCAAAAGCGGAAGTCAACTTCAGCTGGTGGGATTGGCTCTG
ATTCAACTGCAGAAATGTCCGGAAACTCAAAGAAAAAGAAGGTCACTGCTTAAATAACAG
TGATTTGTAAATGTCTCTGTCTTATATTCTTGTTGTAGGCCTCTTGCATTTGATTTTATG
TACTCGTTTCCCCTGATTTCATACTGGTGTATTGTTTATCAAATCCTACATAAATAAAGA
TTTGTT

consensusID : consensus_6690#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 167
fasta sequence

                              [GCCCGGTACCCTGAATTTGACTTCCGCTCTTGGTTGGATTGGCTCTGATTCAACTGCAGAAATGTCCGGAAACTCAAAGAAAAAGAAGGTCACTGCTTAAATAACAGTGATTTGTAAATGTCTCTGTCTTATATTCTTGTTGTAGGCCTCTTGCATTTGATTTTATG]

[+] EMBL CD168080             [GCCCGGTACCCTGAATTTGACTTCCGCTCTTGGTTGGATTGGCTCTGATTCAACTGCAGAAATGTCCGGAAACTCAAAGAAAAAGAAGGTCACTGCTTAAATAACAGTGATTTGTAAATGTCTCTGTCTTATATTCTTGTTGTAGGCCTCTTGCATTTGATTTTATG]
[+] EMBL CD168086             [gaCCGGTACCCTGAATTTGACTTCCGCTTTTGGTTGGATTGGCTCTGATTCAACTGCAGAAATGTCCGGAAACTCAAAGAAAAAGAAGGTCACTGCTTAAATAACAGTGATTTGTAAATGTCTCTGTCTTATATTCTTGTTGTAGGCCTCTTGCATTTGATTTTATG]




>consensus_6690#1
GCCCGGTACCCTGAATTTGACTTCCGCTCTTGGTTGGATTGGCTCTGATTCAACTGCAGA
AATGTCCGGAAACTCAAAGAAAAAGAAGGTCACTGCTTAAATAACAGTGATTTGTAAATG
TCTCTGTCTTATATTCTTGTTGTAGGCCTCTTGCATTTGATTTTATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6690#0      CGAGCCAAAAATTCGGCACGAGGGCGAAAATCCAAAGAAGAGCTGCCGTAAAACGTGCTC 60
consensus_6690#1      ------------------------------------------------------------
                                                                                  

consensus_6690#0      TTGATCTAAAGATGGCCCGATATCGAGCACCGTTTCACCAACTTCGAATACAATATGGAA 120
consensus_6690#1      ------------------------------------------------------------
                                                                                  

consensus_6690#0      CAAATAAAGGGAAGAACTATGTCGAGGAGGAAGATCGCTTCTTAATCTGCATGCTTCACA 180
consensus_6690#1      ------------------------------------------------------------
                                                                                  

consensus_6690#0      AACTTGGTTTCGATCGTGACAATGTATATGATGACTTACGTCTTGCAGTTCGCTTAGCCC 240
consensus_6690#1      ------------------------------------------------------------
                                                                                  

consensus_6690#0      CACAGTTTCGATTTGATTGGTTTTTGCGATCTCGCACAGCAATGGAGCTACAAAGACGTT 300
consensus_6690#1      ------------------------------------------------------------
                                                                                  

consensus_6690#0      GCAGTACTCTTATTACTTTGATCGAGAGAGAAATATGTGACTTGGAAGACCGAACAAAAC 360
consensus_6690#1      ------------------------------------------------------------
                                                                                  

consensus_6690#0      AGCGCAGTGGAGCAGGCGCGAATAATTTATCACTCACTCCTGCAAATTCCGGACCATCTA 420
consensus_6690#1      ------------------------------------------------------------
                                                                                  

consensus_6690#0      ACACATCCACAGTATCCAACCAAAAGCGGAAGTCAACTTCAGCT---GGTGGGATTGGCT 477
consensus_6690#1      -------------GCCCGGT---ACCCTGAATTTGACTTCCGCTCTTGGTTGGATTGGCT 44
                                     **      *  * *** *  ***** ***   *** *********

consensus_6690#0      CTGATTCAACTGCAGAAATGTCCGGAAACTCAAAGAAAAAGAAGGTCACTGCTTAAATAA 537
consensus_6690#1      CTGATTCAACTGCAGAAATGTCCGGAAACTCAAAGAAAAAGAAGGTCACTGCTTAAATAA 104
                      ************************************************************

consensus_6690#0      CAGTGATTTGTAAATGTCTCTGTCTTATATTCTTGTTGTAGGCCTCTTGCATTTGATTTT 597
consensus_6690#1      CAGTGATTTGTAAATGTCTCTGTCTTATATTCTTGTTGTAGGCCTCTTGCATTTGATTTT 164
                      ************************************************************

consensus_6690#0      ATGTACTCGTTTCCCCTGATTTCATACTGGTGTATTGTTTATCAAATCCTACATAAATAA 657
consensus_6690#1      ATG--------------------------------------------------------- 167
                      ***                                                         

consensus_6690#0      AGATTTGTT 666
consensus_6690#1      ---------