These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6692#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1046 fasta sequence [TATTTATTGATTTGATCTAATAGATTTCATAATAGCACAATGATATTTAAAAAAAGAATAACTGACTAGATGAAAAGTAAAAATACGTTGAAAACCAAACATATAGAACATAGTTCAAGAGAAAAGGGTGAAGTAGTGAACAAAATCAAGAAAAGTCAAAAATAAGAAACAATTCAAAACGAATATATTTAAAGTACTGCAAGGTCAGTTACACTTAACGCAGAACATGGTACATGTGCACAACGGTTCAAGTTCATACAATCTATTAGAACAATAAGATGAAATTGTGAGCGCAGATCCCACAGTAGTAAAGCAAGTGAGAGAACTAGTGGTAATAGAAACTATTTGAAATACGAGATACCATTCAAGAGGAAAATATAAATTAGTGTAGTAAAAACATTGGTAGACTTCCGATCTCAGAGAATAAAATGAGTGAATGAACCTGGACCACTCCAATTGATTTTGAGCTATTTCACTCAGAGTCCCTAATCATTAGTTATGATAATTACGTCGACCACAACTACGTAGTCTGTCTGCACACACACACACAGCTCAGTCTAATAGTCAGTTTCCTTACAGACTGATGTCATGTCTTGATCAAAATTATTTCTTTTGGTGCATCTTGTTTATTTACAAACACAACAAACCTTTTGCAATTTAATGGTCTATTATTATTATTGATATTATTCTTACCTCCATCCATTTTAGATTTAGAAACAAGCAAATTTGATCAATTACCTTCAGAAATAACATCAGACTTATTATCAGCTACTATGGAAGCTCAAACAACTGCTGAATCTCATTTAAAACAATGTAATCAAGATAATTCTAATACAATACAACCAATCACTAATAATAATAATAATAATAATAAGAATAACTTAACAATGACCGTTTCAATGTTTCAATATATGTGCCTACAAAATACAGTGAATTTAGGTCAACTAATGAATTCTTTACAAAAACTTAATAGTCCAGATCTTGTCGCTTTAATTCAACAACAAATTGGAATAATAAAATCAAAAAAAACTATTAATCAATCAAAT] [+] EMBL CD079903 [TATTTATTGATTTGATCTAATAGATTTCATAATAGCACAATGATATTTAAAAAAAGAATAACTGACTAGATGAAAAGTAAAAATACGTTGAAAACCAAACATATAGAACATAGTTCAAGAGAAAAGGGTGAAGTAGTGAACAAAATCAAGAAAAGTCAAAAATAAGAAACAATTCAAAACGAATATATTTAAAGTACTGCAAGGTCAGTTACACTTAACGCAGAACATGGTACATGTGCACAACGGTTCAAGTTCATACAATCTATTAGAACAATAAGATGAAATTGTGAGCGCAGATCCCACAGTAGTAAAGCAAGTGAGAGAACTAGTGGTAATAGAAACTATTTGAAATACGAGATACCATTCAAGAGGAAAATATAAATTAGTGTAGTAAAAACATTGGTAGACTTCCGATCTCAGAGAATAAAATGAGTGAATGAACCTGGACCACTCCAATTGATTTTGAGCTATTTCACTCAGAGTCCCTAATCATTAGTTATGATAATTACGTCGACCACAACTACGTAGTCTGTCTGCACACACACACACAGCTCAGTCTAATAGTCAGTTTCCTTACAGACTGATGTCATGTCTTGATCAAAATTATTTCTTTTGGTGCATCTTGTTTATTTACAAACACAAC ] [-] EMBL CD074100 [ nAATATAAATTAGTGTAGTANAAACATTGGTAGACTTCCGATCTCAGAGAATANAATGAGTGAATGAACCTGGACCACTCCAATTGATTTTGAGCTATTTCACTCAGAGTCCCTAATCATTAGTTATGATAATTACGTCGACCACAACTACGTAGTCTGTCTGCACACACACACACAGCTCAGTNTAATAGTCAGTTTCCTTACAGACTGATGTCATGTCTTGATCAAAATTATTTCTTTTGGTGCATCTTGTTTATTTACAAACACAACAAACCTTTTGCAATTTAATGGTCTATTATTATTATTGATATTATTCTTACCTCCATCCATTTTAGATTTAGAAACAAGCAAATTTGATCAATTACCTTCAGAAATAACATCAGACTTATTATCAGCTACTATGGAAGCTCAAACAACTGCTGAATCTCATTTAAAACAATGTAATCAAGATAATTCTAATACAATACAACCAATCACTAATAATAATAATAATAATAATAAGAATAACTTAACAATGACCGTTTCAATGTTTCAATATATGTGCCTACAAAATACAGTGAATTTAGGTCAACTAATGAATTCTTTACAAAAACTTAATAGTCCAGATCTTGTCGCTTTAATTCAACAACAAATTGGAATAATAAAATCAAAAAAAACTATTAATCAATCAAAT] consensusID : consensus_6692#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 717 fasta sequence [TATACAAACAGTATTTCGTATTGATGACTATTCAGCATACGATCAAGAATCGGATATATCAGACAATAATAACAAATCCAATCAAATGTTGCCAATTTATTGTTCCATCATGGGTTTAATAATTATTTCATTATTATGTTATGTTGTATACAAATTATGGCGACAAAGAGAAGCGTCAAAAAATGCCAAATTAGCTGATTCGTACAATAGTAACAAAACTGATTTATTAGATAGAACATCTTGTCTGGATAATAATCATTTACAACATCGAAGAATTTCATCAGGTTTCGTAAATAATAATGCTCATTTACCAAATCATTCACCTCAGTCTGCAAATGAACTTAATAACATTGCTGATTCAACACCCGATAACGATATTAACAATCAACTTCAATTTAATGATATTATTTATGGTCATGAAAAAGCACCATTACTTGGAAAATTAGATCATTCGAACAGCTCATTTAATAATTTTGAACAACAACCAATAACAGTGATCCCAATGAATATACTAGGAGTTATTTGTTATCGTTTATCTCAACATGGATGGCAAGAACTGGCTAGTATGCTGGATTTAGAAACAGCAAATTTGATCAATTACCTTCAGAAATACATCAGACTTATTATCAGCTACTATGGAAGCTCAAACAACTGCTGAATCTCATTTAAAACAAAATGTATCAAGATATTCTAATACCATACAACCAATCACTAATA] [+] EMBL BF936509 [TATACAAACAGTATTTCGTATTGATGACTATTCAGCATACGATCAAGAATCGGATATATCAGACAATAATAACAAATCCAATCAAATGTTGCCAATTTATTGTTCCATCATGGGTTTAATAATTATTTCATTATTATGTTATGTTGTATACAAATTATGGCGACAAAGAGAAGCGTCAAAAAATGCCAAATTAGCTGATTCGTACAATAGTAACAAAACTGATTTATTAGATAGAACATCTTGTCTGGATAATAATCATTTACAACATCGAAGAATTTCATCAGGTTTCGTAAATAATAATGCTCATTTACCAAATCATTCACCTCAGTCTGCAAATGAACTTAATAACATTGCTGATTCAACACCCGATAACGATATTAACAATCAACTTCAATTTAATGATATTATTTATGGTCATGAAAAAGCACCATTACTTGGAAAATTAGATCATTCGAACAGCTCATTTAATAATTTTGAACAACAACCAATAACAGTGATCCCAATGAATATACTAGGAGTTATTTGTTATCGTTTATCTCAACATGGATGGCAAGAACTGGCTAGTATGCTGGATTTAGAAACAGCAAATTTGATCAATTACCTTCAGAAATACATCAGACTTATTATCAGCTACTATGGAAGCTCAAACAACTGCTGAATCTCATTTAAAACAAAATGTATCAAGATATTCTAATACCATACAACCAATCACTAATA] [+] EMBL BF936785 [ TTTCGTATTGATGACTATTCAGCATACGATCAAGAATCGGATATATCAGACAATAATAACAAATCCAATCAAATGTTGCCAATTTATTGTTCCATCATGGGTTTAATAATTATTTCATTATTATGTTATGTTGTATACAAATTATGGCGACAAAGAGAAGCGTCAAAAAATGCCAAATTAGCTGATTCGTACAATAGTAACAAAACTGATTTATTAGATAGAACATCTTGTCTGGATAATAATCATTTACAACATCGAAGAATTTCATCAGGTTTCGTAAATAATAATGCTCATTTACCAAATCATTCACCTCAGTCTGCAAATGAACTTAATAACATTGCTGATTCAACACCCGATAACGATATTAACAATCAACTTCAATTTAATGATATTATTTATGGTCATGAAAAAGCACCATTACTTGGAAAATTAGATCATTCGAACAGCTCATTTAATAATTTTGAACAACAACCAATAACAGTGATCCCAATGAATATACTAGGAGTTATTTGTTATCGTTTATCTCAACATGGAT GCAAGAACT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6692#0 TATTTATTGATTTGATCTAATAGATTTCATAATAGCACAATGATATTTAAAAAAAGAATA 60 consensus_6692#1 ------------------------------------------------------------ consensus_6692#0 ACTGACTAGATGAAAAGTAAAAATACGTTGAAAACCAAACATATAGAACATAGTTCAAGA 120 consensus_6692#1 ---------------------------------------TATACAAACAGTATTTC--GT 19 *** * * ** *** * consensus_6692#0 GAAAAGGGTGAAGTAGTGAACAAAATCAAGAAAAGTCAAAAATAAGAAACAATTCAAAAC 180 consensus_6692#1 ATTGATGACTATTCAGCATACG--ATCAAGAA---TCGGATATATCAGACAATA-ATAAC 73 * * * ** ** ******** ** * *** * ***** * *** consensus_6692#0 GAATATATTTAAAGTACTGCAAGGTCAGTTACACTTAACGCAGAACATGGTACATGTGCA 240 consensus_6692#1 AAATCCAATCAAA-TGTTGCCAATTTATTGTTCCATCATGGGTTTAATAAT-TATTTCAT 131 *** * * *** * *** * * * * * * * * ** * ** * consensus_6692#0 CAACGGTTCAAGTT-CATACAATCTATTAGAACAATAAGATGAAATTGTGAGCGCAGATC 299 consensus_6692#1 TATTATGTTATGTTGTATACAAATTATGGCGACAAAGAGA----------AGCGTCAA-- 179 * * * *** ****** *** **** *** **** * consensus_6692#0 CCACAGTAGTAAAGCAAGTGAGAGAACTAGTGGTAATAGAAACTATTTGAAATACGAGAT 359 consensus_6692#1 --AAAATGCCAAATTAGCTGATTCGTACAATAGTAACAAAACTGATTTATTAGATAGAAC 237 * * * *** * *** * * **** * ** **** * * * consensus_6692#0 ACCATTCAAGAGGAAAATATAAATTAGTGTAGTAAAAACATTGGTAGACTTCCGATCTCA 419 consensus_6692#1 ATCTTGTCTGGATAATA-ATCATTTACAACATCGAAGAATTTCATCAGGTTTCG----TA 292 * * * * ** * ** * *** * ** * ** * ** ** * consensus_6692#0 GAGAATAAAATGAGTGAATGAACCTGGACCACTCCAATTGATTTTGAGCTATTTCACTCA 479 consensus_6692#1 AATAATAATGCTCATTTACCAAATCAT-TCACCTCAGTC---TGCAAATGAACTTAATAA 348 * ***** * * ** *** ** * * * * * * * * consensus_6692#0 GAGTCCCTAATCATTAGTTATGATAATTACGTCGACCA-CAACTACGTAGTCTGTCTGCA 538 consensus_6692#1 CATTGCTGATTCAACACCC--GATAACGATATTAACAATCAACTTC--AATTTAATGATA 404 * * * * *** * ***** * * ** * ***** * * * * * consensus_6692#0 CACACACACACAGCTCAGTCTAATAGTCAGTTTCCTTACAGACTGATGTCATGTCTTGAT 598 consensus_6692#1 T---TATTTATGGTC--ATGAAAAAGCACCATTACTTGGAAAATTAGATCATTCGAACAG 459 * * * * ** ** ** *** * * * * **** * consensus_6692#0 CAAAATTATTTCTTTTGGTGCATCTTGTTTATTTACAAACACAACAAACCTTTTGCAATT 658 consensus_6692#1 CTCATTTAATAATTTTGAACAACAACCAATAACAGTGATCCCAATGAATATACTAGGAGT 519 * * *** * ***** * ** * * *** ** * * * * consensus_6692#0 TAATGGTCTATTATTATTATTGATATTATTCTTA----CCTCCATCCATTTTAGATTTAG 714 consensus_6692#1 TATTTGT-TATCGTTTATCTCAACATGGATGGCAAGAACTGGCTAGTATGCTGGATTTAG 578 ** * ** *** ** * * * ** * * * * ** * ******* consensus_6692#0 AAACAAGCAAATTTGATCAATTACCTTCAGAAATAACATCAGACTTATTATCAGCTACTA 774 consensus_6692#1 AAACA-GCAAATTTGATCAATTACCTTCAGAAATA-CATCAGACTTATTATCAGCTACTA 636 ***** ***************************** ************************ consensus_6692#0 TGGAAGCTCAAACAACTGCTGAATCTCATTTAAAACAATGTA-ATCAAGATAATTCTAAT 833 consensus_6692#1 TGGAAGCTCAAACAACTGCTGAATCTCATTTAAAACAAAATGTATCAAGATA-TTCTAAT 695 ************************************** * ********* ******* consensus_6692#0 ACAATACAACCAATCACTAATAATAATAATAATAATAATAAGAATAACTTAACAATGACC 893 consensus_6692#1 ACCATACAACCAATCACTAATA-------------------------------------- 717 ** ******************* consensus_6692#0 GTTTCAATGTTTCAATATATGTGCCTACAAAATACAGTGAATTTAGGTCAACTAATGAAT 953 consensus_6692#1 ------------------------------------------------------------ consensus_6692#0 TCTTTACAAAAACTTAATAGTCCAGATCTTGTCGCTTTAATTCAACAACAAATTGGAATA 1013 consensus_6692#1 ------------------------------------------------------------ consensus_6692#0 ATAAAATCAAAAAAAACTATTAATCAATCAAAT 1046 consensus_6692#1 --------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||