cluster # 6696

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Schistosoma mansoni
cluster # 6696 cluster # 6696 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6696#0 length = 836 sequences # 3

consensus_6696#1 length = 400 sequences # 1

consensusID : consensus_6696#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 836
fasta sequence

                              [TCGGCACGAGGGTTTTTTCATAAAAAAAATTTATTTACACTACATAAGCATCTCATATACAACAATCCCGTAAAAAAATAGTTACAGACCACCGGCAAAAAGACTGCCCATAAATTCGGGATTCGAAACAGCCGAGAAGCCAAGACATCCTTCAGGTGGTGTACGACTAGAATGAGCAAGTTTTTCTTTGATCTCATCTTCTGTAAGCTTTTGGCGTCGATTCAATCGGACTGGTTTTCTTTCAGTAAATCTTTTCCCTTTAACTTGTTTCATCCTTTTTTCTAGTTTCTTTGCATCTAGAGCTGCAGAAAATTGGCGAGATTGATGCTTCGCGACCACTATATCACGATCATGAGCTGTACGCCTTTGTTCTTCTTCTTCACGTTCAGCGCCAAAAAGGTCGTTCCATGAAGTATCTTTCAAAAATCTAATGTTCCACAGTTCACCAAACCACGGATTACGCTTTGATCCGAGAACTTCTGTACAGTTAAGCCGTTTAGCAACACGCTTAGCTATTTTCTTGTTCAGAAACTCAACCCAGCCTTCTTCATATTGACGGTATTTTCCTACTTTTTTCTTATTTGGTACCAAATAAACTCTGCCAATTTTGCCAAACTGTTGCATAATGTCCGAGATCATGCTAACGTTCATCCCATTCGGTATAGTTGAAAGATATATAATACCCGGAACATCAGAATCAACTTTGTCGTCCTCTATTCTGGCATCCAAAACCATCGAGTTAAATGCCGAGGTGAACTGAGACGATAACCGGGCGTCCTTAGGCGATGCAATGACCTTGACAAGCAGACTATCTGCTTGTATTTTGCCGCGAAGTG]

[+] EMBL CD079935             [TCGGCACGAGGGTTTTTTCATAAAAAAAATTTATTTACACTACATAAGCATCTCATATACAACAATCCCGTAAAAAAATAGTTACAGACCACCGGCAAAAAGACTGCCCATAAATTCGGGATTCGAAACAGCCGAGAAGCCAAGACATCCTTCAGGTGGTGTACGACTAGAATGAGCAAGTTTTTCTTTGATCTCATCTTCTGTAAGCTTTTGGCGTCGATTCAATCGGACTGGTTTTCTTTCAGTAAATCTTTTCCCTTTAACTTGTTTCATCCTTTTTTCTAGTTTCTTTGCATCTAGAGCTGCAGAAAATTGGCGAGATTGATGCTTCGCGACCACTATATCACGATCATGAGCTGTACGCCTTTGTTCTTCTTCTTCACGTTCAGCGCCAAAAAGGTCGTTCCATGAAGTATCTTTCAAAAATCTAATGTTCCACAGTTCACCAAACCACGGATTACGCTTTGATCCGAGAACTTCTGTACAGTTAAGCCGTTTAGCAACACGCTTAGCTATTTTCTTGTTCAGAAACTCAACCCAGCCTTCTTCATATTGACGGTATTTTCCTACTTTTTTCTT                                                                                                                                                                                                                                                                 ]
[-] EMBL CD074132             [             TTTTTCATAAAAAAAATTTATTTACACTACATAAGCATCTCATATACAACAATCCCGTAAAAAAATAGTTACAGACCACCGGCAAAAAGACTGCCCATAAATTCGGGATTCGAAACAGCCGAGAAGCCAAGACATCCTTCAGGTGGTGTACGACTAGAATGAGCAAGTTTTTCTTTGATCTCATCTTCTGTAAGCTTTTGGCGTCGATTCAATCGGACTGGTTTTCTTTCAGTAAATCTTTTCCCTTTAACTTGTTTCATCCTTTTTTCTAGTTTCTTTGCATCTAGAGCTGCAGAAAATTGGCGAGATTGATGCTTCGCGACCACTATATCACGATCATGAGCTGTACGCCTTTGTTCTTCTTCTTCACGTTCAGCGCCAAAAAGGTCGTTCCATGAAGTATCTTTCAAAAATCTAATGTTCCACAGTTCACCAAACCACGGATTACGCTTTGATCCGAGAACTTCTGTACAGTTAAGCCGTTTAGCAACACGCTTAGCTATTTTCTTGTTCAGAAACTCAACCCAGCCTTCTTCATATTGACGGTATTTTCCTACTTTTTTCTTA                                                                                                                                                                                                                                                                ]
[-] EMBL CD157866             [                                                                                                                                                                                                                                                                                                                                                                    CTGTACGCCTTTGTTCTTCTTCTTCACGTTCAGCGCCAAAAAGGTCGTTCCATGAAGTATCTTTCAAAAATCTAATGTTCCACAGTTCACCAAACCACGGATTACGCTTTGATCCGAGAACTTCTGTACAGTTAAGCCGTTTAGCAACACGCTTAGCTATTTTCTTGTTCAGAAACTCAACCCAGCCTTCTTCATATTGACGGTATTTTCCTACTTTTTTCTTTTTTGGTACCAAATAAACTCTGCCAATTTTGCCAAACTGTTGCATAATGTCCGAGATCATGCTAACGTTCATCCCATTCGGTATAGTTGAAAGATATATAATACCCGGAACATCAGAATCAACTTTGTCGTCCTCTATTCTGGCATCCAAAACCATCGAGTTAAATGCCGAGGTGAACTGAGACGATAACCGGGCGTCCTTAGGCGATGCAATGACCTTGACAAGCAGACTATCTGCTTGTATTTTGCCGCGAAGTG]




>consensus_6696#0
TCGGCACGAGGGTTTTTTCATAAAAAAAATTTATTTACACTACATAAGCATCTCATATAC
AACAATCCCGTAAAAAAATAGTTACAGACCACCGGCAAAAAGACTGCCCATAAATTCGGG
ATTCGAAACAGCCGAGAAGCCAAGACATCCTTCAGGTGGTGTACGACTAGAATGAGCAAG
TTTTTCTTTGATCTCATCTTCTGTAAGCTTTTGGCGTCGATTCAATCGGACTGGTTTTCT
TTCAGTAAATCTTTTCCCTTTAACTTGTTTCATCCTTTTTTCTAGTTTCTTTGCATCTAG
AGCTGCAGAAAATTGGCGAGATTGATGCTTCGCGACCACTATATCACGATCATGAGCTGT
ACGCCTTTGTTCTTCTTCTTCACGTTCAGCGCCAAAAAGGTCGTTCCATGAAGTATCTTT
CAAAAATCTAATGTTCCACAGTTCACCAAACCACGGATTACGCTTTGATCCGAGAACTTC
TGTACAGTTAAGCCGTTTAGCAACACGCTTAGCTATTTTCTTGTTCAGAAACTCAACCCA
GCCTTCTTCATATTGACGGTATTTTCCTACTTTTTTCTTATTTGGTACCAAATAAACTCT
GCCAATTTTGCCAAACTGTTGCATAATGTCCGAGATCATGCTAACGTTCATCCCATTCGG
TATAGTTGAAAGATATATAATACCCGGAACATCAGAATCAACTTTGTCGTCCTCTATTCT
GGCATCCAAAACCATCGAGTTAAATGCCGAGGTGAACTGAGACGATAACCGGGCGTCCTT
AGGCGATGCAATGACCTTGACAAGCAGACTATCTGCTTGTATTTTGCCGCGAAGTG

consensusID : consensus_6696#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 400
fasta sequence

                              [ACGCTATTAGGACTATCACACCCATCATACCATACAGTAATGCTCCTATCATTAACTGAAAAGAAATTGACAGCCTCATGAACTGAGAACCCTTAGTGTTAAGCGCGTCCTCGCATCCATTAAGACTCGGCTTACAATACATTTTGTGCGTTTCACGTAATGTGGGACTAATAGTCACAAATGTCTCATGTCAGATTCAGGAAGGAAAAGTCAACGGTTCATCTACACTGATGAAGAAACTGTCATATATGTTACAAAGGCGCCGAACAAAGACATTCACTAGAGATCATTGCAAACGAATTAGGGGGTTACGAAGAGACGGGAATGGAATTAAAGGCTAAATCTTTAATGCATACCGTCCTTAGGCGATGCAATGACCTTGACAAGCAGACTATCTGCT]

[+] EMBL CD159305             [ACGCTATTAGGACTATCACACCCATCATACCATACAGTAATGCTCCTATCATTAACTGAAAAGAAATTGACAGCCTCATGAACTGAGAACCCTTAGTGTTAAGCGCGTCCTCGCATCCATTAAGACTCGGCTTACAATACATTTTGTGCGTTTCACGTAATGTGGGACTAATAGTCACAAATGTCTCATGTCAGATTCAGGAAGGAAAAGTCAACGGTTCATCTACACTGATGAAGAAACTGTCATATATGTTACAAAGGCGCCGAACAAAGACATTCACTAGAGATCATTGCAAACGAATTAGGGGGTTACGAAGAGACGGGAATGGAATTAAAGGCTAAATCTTTAATGCATACCGTCCTTAGGCGATGCAATGACCTTGACAAGCAGACTATCTGCT]




>consensus_6696#1
ACGCTATTAGGACTATCACACCCATCATACCATACAGTAATGCTCCTATCATTAACTGAA
AAGAAATTGACAGCCTCATGAACTGAGAACCCTTAGTGTTAAGCGCGTCCTCGCATCCAT
TAAGACTCGGCTTACAATACATTTTGTGCGTTTCACGTAATGTGGGACTAATAGTCACAA
ATGTCTCATGTCAGATTCAGGAAGGAAAAGTCAACGGTTCATCTACACTGATGAAGAAAC
TGTCATATATGTTACAAAGGCGCCGAACAAAGACATTCACTAGAGATCATTGCAAACGAA
TTAGGGGGTTACGAAGAGACGGGAATGGAATTAAAGGCTAAATCTTTAATGCATACCGTC
CTTAGGCGATGCAATGACCTTGACAAGCAGACTATCTGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6696#0      TCGGCACGAGGGTTTTTTCATAAAAAAAATTTATTTACACTACATAAGCATCTCATATAC 60
consensus_6696#1      ------------------------------------------------------------
                                                                                  

consensus_6696#0      AACAATCCCGTAAAAAAATAGTTACAGACCACCGGCAAAAAGACTGCCCATAAATTCGGG 120
consensus_6696#1      ------------------------------------------------------------
                                                                                  

consensus_6696#0      ATTCGAAACAGCCGAGAAGCCAAGACATCCTTCAGGTGGTGTACGACTAGAATGAGCAAG 180
consensus_6696#1      ------------------------------------------------------------
                                                                                  

consensus_6696#0      TTTTTCTTTGATCTCATCTTCTGTAAGCTTTTGGCGTCGATTCAATCGGACTGGTTTTCT 240
consensus_6696#1      ------------------------------------------------------------
                                                                                  

consensus_6696#0      TTCAGTAAATCTTTTCCCTTTAACTTGTTTCATCCTTTTTTCTAGTTTCTTTGCATCTAG 300
consensus_6696#1      ------------------------------------------------------------
                                                                                  

consensus_6696#0      AGCTGCAGAAAATTGGCGAGATTGATGCTTCGCGACCACTATATCACGATCATGAGCTGT 360
consensus_6696#1      ------------------------------------------------------------
                                                                                  

consensus_6696#0      ACGCCTTTGTTCTTCTTCTTCACGTTCAGCGCCAAAAAGGTCGTTCCATGAAGTATCTTT 420
consensus_6696#1      ----------------------------ACGCTATTAGGACTATCACACC---CATCATA 29
                                                   *** *  * *    *  **      *** * 

consensus_6696#0      CAAAAATCTAATGTTCC-ACAGTTCACCAAACC---ACGGATTACGCTTTGATCCGAGAA 476
consensus_6696#1      CCATACAGTAATGCTCCTATCATTAACTGAAAAGAAATTGACAGCCTCATGAACTGAGAA 89
                      * * *   ***** *** *   ** **  **     *  **   *    *** * *****

consensus_6696#0      CTTCTGTACAGTTAAGCCGTTTAGCAACACGCTTAGCTATTTTCTTGTTCAGAAACTCAA 536
consensus_6696#1      C--CCTTAGTGTTAAGC-GCGTCCTCGCATCCATTAAGACTCGGCTTACAATACATTTTG 146
                      *  *  **  ******* *  *     **  * *    * *    *    * * * *   

consensus_6696#0      CCCAGCCTTCTTCATATTGACGGTATTTTCCTACTTTTTTCTTATTTGGTACC--AAATA 594
consensus_6696#1      TGCGTTTCACGTAATGTGGGACTAATAGTCACAAATGTCTCATGTCAGATTCAGGAAGGA 206
                        *      * * ** * *     **  **  *  * * ** * *  * * *   **  *

consensus_6696#0      AACTCTGCCAATTTTGCCAAACTGTTGCATAATGTCCGAGATCATGCTAACGTTCATCCC 654
consensus_6696#1      AAAGTCAACGGTTCATCTACACTGATGAAGAAACTGTCATAT-ATGTTACAAA------- 258
                      **      *  **   * * **** ** * **  *   * ** *** **           

consensus_6696#0      ATTCGGTATAGTTGAAAGATATATAATACCCGGAACATCAGAATCAACTTTGTCGTCCTC 714
consensus_6696#1      ----GGCGCCGAACAAAGACATTCACTAG--AGATCATTGCAAACGAATTAGGGGGTTAC 312
                          **    *   ***** **  * **    ** ***   ** * * ** *  *    *

consensus_6696#0      TATTCTGGCATCCAAAACCATCGAGTTAAATGCCGAGGTGAACTGAGACGATAACCGGGC 774
consensus_6696#1      GA----AGAGACGGGAA---TGGAATTAAAGGCTAA----ATCTTTAATGCATACCG--- 358
                       *     *   *   **   * ** ***** **  *    * **   * *   ****   

consensus_6696#0      GTCCTTAGGCGATGCAATGACCTTGACAAGCAGACTATCTGCTTGTATTTTGCCGCGAAG 834
consensus_6696#1      -TCCTTAGGCGATGCAATGACCTTGACAAGCAGACTATCTGCT----------------- 400
                       ******************************************                 

consensus_6696#0      TG 836
consensus_6696#1      --