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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6698#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 638 fasta sequence
[CCAGAATTCTGCACGAGGCACAGGGTCGTCCTTAAGCTATAATCCCGGCGGTTTCAGTGGATCACTTTTCTTCTGAGTATCTTTTTAATTAACAATTACCTGAGGTTTGATCTGGGATAAATCTGCTTTTTGGTTTCTTACGTATTCAATGCTTCTAACAAGTGTCCGTTATGGACGTTTCATACCCTGGAAATCAGTTCCCGGTAGCGTTTGGGGTGGTAAAGAACGGAAAATCCCCCGTCTAACTAATGCGCGTAAAGAAGCGTTTTTGGATGAGCTTCTTATTTCCCGCCAAAACCATATGTACCTTCAGGAACCGTATTTCAGTGAAGAAGTTGAAGCTGCTACTCTAGCTGATGAGAAAATCCGTGAATTGCAAATGGAAGACAAGTTTTTCTATGATCGATATGCTAAACAATTTGATCGTCGTTTTCCTACGCGTAATCTGGAAACATTTTGGGATAAATTGTCAAGAACTAAACGTTATGATGTTTGACAAATTAGGCATGATGATGACATTTGTTTTATGAGTTCTTGTTTTCTCTATAGTTTACATTACAAACTATACACTTATGTATATATATTCAAATGACCATAAATACTGAAAGTTCCTAGATGACATTTTTCAATAAAACGTT]
[+] EMBL CD079941 [CCAGAATTCTGCACGAGGCACAGGGTCGTCCTTAAGCTATAATCCCGGCGGTTTCAGTGGATCACTTTTCTTCTGAGTATCTTTTTAATTAACAATTACCTGAGGTTTGATCTGGGATAAATCTGCTTTTTGGTTTCTTACGTATTCAATGCTTCTAACAAGTGTCCGTTATGGACGTTTCATACCCTGGAAATCAGTTCCCGGTAGCGTTTGGGGTGGTAAAGAACGGAAAATCCCCCGTCTAACTAATGCGCGTAAAGAAGCGTTTTTGGATGAGCTTCTTATTTCCCGCCAAAACCATATGTACCTTCAGGAACCGTATTTCAGTGAAGAAGTTGAAGCTGCTACTCTAGCTGATGAGAAAATCCGTGAATTGCAAATGGAAGACAAGTTTTTCTATGATCGATATGCTAAACAATTTGATCGTCGTTTTCCTACGCGTAATCTGGAAACATTTTGGGATAAATTGTCAAGAACTAAACGTTATGATGTTTGACAAATTAGGCATGATGATGACATTTGTTTTATGAGTTCTTGTTTTCTCTATAGTTTACATTACAAACTATACACTTATGTATATATATTCAAATGACCATAAATACTGAAAGTTCCTAGATGACATTTTTCAATAAAACGT ]
[-] EMBL CD074138 [ aaGGTCGTCCTTAAGCTATAATCCCGGCGGTTTCAGTGGATCACTTTTCTTCTGAGTATCTTTTTAATTAACAATTACCTGAGGTTTGATCTGGGATAAATCTGCTTTTTGGTTTCTTACGTATTCAATGCTTCTAACAAGTGTCCGTTATGGACGTTTCATACCCTGGAAATCAGTTCCCGGTAGCGTTTGGGGTGGTAAAGAACGGAAAATCCCCCGTCTAACTAATGCGCGTAAAGAAGCGTTTTTGGATGAGCTTCTTATTTCCCGCCAAAACCATATGTACCTTCAGGAACCGTATTTCAGTGAAGAAGTTGAAGCTGCTACTCTAGCTGATGAGAAAATCCGTGAATTGCAAATGGAAGACAAGTTTTTCTATGATCGATATGCTAAACAATTTGATCGTCGTTTTCCTACGCGTAATCTGGAAACATTTTGGGATAAATTGTCAAGAACTAAACGTTATGATGTTTGACAAATTAGGCATGATGATGACATTTGTTTTATGAGTTCTTGTTTTCTCTATAGTTTACATTACAAACTATACACTTATGTATATATATTCAAATGACCATAAATACTGAAAGTTCCTAGATGACATTTTTCAATAAAACGTT]
consensusID : consensus_6698#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 530 fasta sequence
[AAAGTTGCGAAACGTTTAGATAATTAAGTGACATTGAGGAAAATGATCACTTCAAGTTCTTGGTTGCGTCTATCTTAGTTTAGGCGGTTGATTAGTACTATTATGTTTAACACCAACAGTACACATCAAAGCTCAGGCGTCTATTTGATTATTGGGACGTAGTTTAAGGTAATAATTCAGTAACTACTGTTTGAAAATCCTACACTGTTTAAGTCAGTTAGAGGTTATGTCATTACTAAATCTTAGCTTCTTTTCTCATTATCTTAAATGGTATACCTTTAATTCTGTACTTTC-AATCCAGATCCGTGAATTGCAAATGGAAGACAAGTTTTTCTATGATCGATATGCTAAACAATTTGATCGTCGTTTTCCTACGCGTAATCTGGAAACATTTTGGGATAAATTGTCAAGAACTAAACGTTATGATGTTTGACAAATTAGGCATGATGATGACATTTGTTTTATGAGTTCTTGTTTTCTCTATAGTTTACATTACAAACTATACACTTATGTATATATATTCAAATGAC]
[+] EMBL CD140029 [AAAGTTGCGAAACGTTTAGATAATTAAGTGACATTGAGGAAAATGATCACTTCAAGTTCTTGGTTGCGTCTATCTTAGTTTAGGCGGTTGATTAGTACTATTATGTTTAACACCAACAGTACACATCAAAGCTCAGGCGTCTATTTGATTATTGGGACGTAGTTTAAGGTAATAATTCAGTAACTACTGTTTGAAAATCCTACACTGTTTAAGTCAGTTAGAGGTTATGTCATTACTAAATCTTAGCTTCTTTTCTCATTATCTTAAATGGTATACCTTTAATTCTGTACTTTC AATCCA ]
[-] EMBL CD140014 [ AAATCTNACACTGTTTAAGTCAGTTAGAGGTTATGTCATTACTAAATCTTAGCTTCTTTCCTCATTATCTTAAATGTTATACCTNTAATTCTGTACTTTCAAATCCAGATCCGTGAATTGCAAATGGAAGACAAGTTTTTCTATGATCGATATGCTAAACAATTTGATCGTCGTTTTCCTACGCGTAATCTGGAAACATTTTGGGATAAATTGTCAAGAACTAAACGTTATGATGTTTGACAAATTAGGCATGATGATGACATTTGTTTTATGAGTTCTTGTTTTCTCTATAGTTTACATTACAAACTATACACTTATGTATATATATTCAAATGAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6698#0 CCAGAATTCTGCACGAGGCACAGGGTCGTCCTTAAGCTATAATCCCGGCGGTTTCAGTGG 60
consensus_6698#1 -----------------------------------------------AAAGTT---GCGA 10
*** * *
consensus_6698#0 ATCACTTTTCTT-CTGAGTATCTTTTTAATTAACAATTACCTGAGGTTTGATCTGGGATA 119
consensus_6698#1 AACGTTTAGATAATTAAGTGACATTGAGGAAAATGATCACTTCAAGTT----CTTGGTTG 66
* * ** * * *** * ** ** ** ** * * *** ** ** *
consensus_6698#0 AATCTGCTTTTTGGTTTCTTACGTATTCAATGCTTCTAACAAGTGTCCGTTATGGACGTT 179
consensus_6698#1 CGTCTA-TCTTAGTTTAGGCGGTTGATTAGTACTATTA-----TGTTTAACACCAACAGT 120
*** * ** * ** * * * * ** ** *** * ** *
consensus_6698#0 TCATACCCTGGAAATCAGTTCCCGGTAGCGTT-TGGGGTGGTAAAGAACGGAAAATCCCC 238
consensus_6698#1 ACACATC--AAAGCTCAGGCGTCTATTTGATTATTGGGACGTAGTTTAAGGTAATAATTC 178
** * * * **** * * ** * *** *** * ** ** *
consensus_6698#0 CGTCTAACTAATGCGCGTAAAGA--AGCGTTTTTGGATGAGCTTC---TTATTTCCCGCC 293
consensus_6698#1 AGT--AACTACTGTTTGAAAATCCTACACTGTTTAAGTCAGTTAGAGGTTATGTCATTAC 236
** ***** ** * *** * * *** * ** * **** ** *
consensus_6698#0 AAAACCATATGTACCTTCAGGAACCGTATTTCAGTGAAGAAGTTGAAGCTGCTACTCTAG 353
consensus_6698#1 TAAATCTTA-GCTTCTTTTCTCATTATCTTAAATGGTATACCTTTAATTCTGTACTTTCA 295
*** * ** * *** * * ** * * * * ** ** **** *
consensus_6698#0 CTGATGAGAAAATCCGTGAATTGCAAATGGAAGACAAGTTTTTCTATGATCGATATGCTA 413
consensus_6698#1 ATCC-----AGATCCGTGAATTGCAAATGGAAGACAAGTTTTTCTATGATCGATATGCTA 350
* * *************************************************
consensus_6698#0 AACAATTTGATCGTCGTTTTCCTACGCGTAATCTGGAAACATTTTGGGATAAATTGTCAA 473
consensus_6698#1 AACAATTTGATCGTCGTTTTCCTACGCGTAATCTGGAAACATTTTGGGATAAATTGTCAA 410
************************************************************
consensus_6698#0 GAACTAAACGTTATGATGTTTGACAAATTAGGCATGATGATGACATTTGTTTTATGAGTT 533
consensus_6698#1 GAACTAAACGTTATGATGTTTGACAAATTAGGCATGATGATGACATTTGTTTTATGAGTT 470
************************************************************
consensus_6698#0 CTTGTTTTCTCTATAGTTTACATTACAAACTATACACTTATGTATATATATTCAAATGAC 593
consensus_6698#1 CTTGTTTTCTCTATAGTTTACATTACAAACTATACACTTATGTATATATATTCAAATGAC 530
************************************************************
consensus_6698#0 CATAAATACTGAAAGTTCCTAGATGACATTTTTCAATAAAACGTT 638
consensus_6698#1 ---------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||