These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6700#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1337 fasta sequence [CATGCAATTAGATGAGAACCGTATACTTCTACTCGTATCAGGGCAACTTTCCTATTATCAAATTTTCTTCATAAGGTTACAGTAAGGACAATACTACTATTCATAAGGCACTGGACAGAAAGATAAACTCCCAGAAATGTACTGAGGTTTCTGTGACAAAGCGAAGGAAACTAGTCAACATGACAACTATGACCTTTATCGCTATTAATTTTAGGTTAAAGTACTGGTGGGAAATTAAAATATGAGTTTTCTCCAATATGCTCATCACTGTTTTATTCTTATAAGTCTATTATGCCTGTTTTACTAATCGTCAACTCATTTTGTGGACTATAGAAGTTAAAACAAACCTATTTTTGACTAGTCATACTTAGTTGCAAATCATAACCTGTAAAACAGGGCGAATAATATCTAAAGAAGTCAAAATAACCATTCCGTTGAATAGTAACAAACAACTTATGTTTCAGATGGCTGAACTATTTCTAGACCCGTCTATTCGATCCTGGGTATTCCTTCCCCTTGTAATAATTACTTTCCTCTTTGGAGTTTTACGCCACTACATGACTATCATGTTCAGTAGTGAGAAAAAGGGTGAACTCGAGAATATCGGTGATAGGTAAAGCCCTGAGTTCAACATTNTTACCATTTCAGTCATGCTTTAATCCGCAGCAGACTTTTACGTGAAAATGGAAGATTCTTGCCGGCAAAAGCTTTTAAAATGCGCAAGTATTTCTTCAATGATAAGGAGCATGGGTTTTTTAAAACACAAAAGCGAGAAAGTCCAATGAATAATCCGATGGCTGATCCTTCAATGGCAACTGAGATGCTTAGAAGCAATGCCCTCAATATGGTTCCAATGATTGTTATTGGCAGCTGGATCAACTGGGCTTTTTCAGGTTTTCTGACCACAAAAGTCCCGTTTCCACTCACTTATCGATTTAAGCCCATGCTTCAAAGGGGCTGTGAGTCGCTTACTTCTCTGGATGCACCTTGGGTTAGCTCTGCATCTTGGTATTTTCTGAACATATTTGGCCTCAGAAGTATGTATGGTTTGGTACTTGGTTCGGACAACGCAGCTGATAACTCGATGATTTTGACAGATCATCAAGTACCTACACCACAAGCTCCACAGGATATGCAAAAGGCGTTCAAGGCAGAATGGGAAGCATTGGAAATAGTTGATCACCAATGGGCTCTAGCAGATTGTGAAACAAGACTACTGAACAGATTATCTTGATGCGGTTAGTTCTTCTCTAAATATTAATATACTTTGTTTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACTGCGTA] [+] EMBL CD080138 [CATGCAATTAGATGAGAACCGTATACTTCTACTCGTATCAGGGCAACTTTCCTATTATCAAATTTTCTTCATAAGGTTACAGTAAGGACAATACTACTATTCATAAGGCACTGGACAGAAAGATAAACTCCCAGAAATGTACTGAGGTTTCTGTGACAAAGCGAAGGAAACTAGTCAACATGACAACTATGACCTTTATCGCTATTAATTTTAGGTTAAAGTACTGGTGGGAAATTAAAATATGAGTTTTCTCCAATATGCTCATCACTGTTTTATTCTTATAAGTCTATTATGCCTGTTTTACTAATCGTCAACTCATTTTGTGGACTATAGAAGTTAAAACAAACCTATTTTTGACTAGTCATACTTAGTTGCAAATCATAACCTGTAAAACAGGGCGAATAATATCTAAAGAAGTCAAAATAACCATTCCGTTGAATAGTAACAAACAACTTATGTTTCAGATGGCTGAACTATTTCTAGACCCGTCTATTCGATCCTGGGTATTCCTTCCCCTTGTAATAATTACTTTCCTCTTTGGAGTTTTACGCCACTACATGACTATCATGTTCAGTAGTGAGAAAAAGGGTGAACTCGAGAATATCGGTGATAGGTAAAGCCCTGAGTTCAACATTNTTACCATTTCAGTCATGCTTTAATCCGCAGCAGACTTTTACGTGAAAATGGAAGATTCTTGCC ] [-] EMBL CD195448 [ ATGCTTTAATCCGCAGCAGACTTTTACGTGAAAATGGAAGATTCTTGCCGGCAAAAGCTTTTAAAATGCGCAAGTATTTCTTCAATGATAAGGAGCATGGGTTTTTTAAAACACAAAAGCGAGAAAGTCCAATGAATAATCCGATGGCTGATCCTTCAATGGCAACTGAGATGCTTAGAAGCAATGCCCTCAATATGGTTCCAATGATTGTTATTGGCAGCTGGATCAACTGGGCTTTTTCAGGTTTTCTGACCACAAAAGTCCCGTTTCCACTCACTTATCGATTTAAGCCCATGCTTCAAAGGGGCTGTGAGTCGCTTACTTCTCTGGATGCACCTTGGGTTAGCTCTGCATCTTGGTATTTTCTGAACATATTTGGCCTCAGAAGTATGTATGGTTTGGTACTTGGTTCG ] [-] EMBL AI976299 [ TCTGACCACAAAAGTCCCGTTTCCACTCACTTATCGATTTAAGCCCATGCTTCAAAGGGGCTGTGAGTCGCTTACTTCTCTGGATGCATCTTGGGTTAGCTCTGCATCTTGGTATTTTCTGAACATATTTGGCCTCAAAAGTATGTATGGTTTGGTACTTGGTTCGGACAACGCAGCTGATAACTCGATGATTTTGACAGATCATCAAGTACCTACACCACAAGCTCCACAGGATATGCAAAAGGCGTTCAAGGCAGAATGGGAAGCATTGGAAATAGTTGATCACCAATGGGCTCTAGCAGATTGTGAAACAAGACTACTGAACAGATTATCTTGATGCGGTTAGTTCTTCTCTAAATATTAATATACTTTGTTTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACTGCGTA] consensusID : consensus_6700#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 228 fasta sequence [TGTATGGTTTGGTACTTGGTTGGGACAACGCAGCTGATAACTTAATGATTTTGTCAGATCATCAAGTGCATACACCACAAGGTCCACAGGATATGCAAAAGGCGTTCAAGGCAGAATGGGAAGCATTGGAAATAGTTGATCGCCAATGGGCTATAGCAGATTGTGAAACAAGAATGTTGATCAGATGTATCGTGATGCGTGTAGTTCTTATATTAAATATTAATATAC] [-] EMBL CD074149 [TGTATGGTTTGGTACTTGGTTGGGACAACGCAGCTGATAACTTAATGATTTTGTCAGATCATCAAGTGCATACACCACAAGGTCCACAGGATATGCAAAAGGCGTTCAAGGCAGAATGGGAAGCATTGGAAATAGTTGATCGCCAATGGGCTATAGCAGATTGTGAAACAAGAATGTTGATCAGATGTATCGTGATGCGTGTAGTTCTTATATTAAATATTAATATAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6700#0 CATGCAATTAGATGAGAACCGTATACTTCTACTCGTATCAGGGCAACTTTCCTATTATCA 60 consensus_6700#1 ------------------------------------------------------------ consensus_6700#0 AATTTTCTTCATAAGGTTACAGTAAGGACAATACTACTATTCATAAGGCACTGGACAGAA 120 consensus_6700#1 ------------------------------------------------------------ consensus_6700#0 AGATAAACTCCCAGAAATGTACTGAGGTTTCTGTGACAAAGCGAAGGAAACTAGTCAACA 180 consensus_6700#1 ------------------------------------------------------------ consensus_6700#0 TGACAACTATGACCTTTATCGCTATTAATTTTAGGTTAAAGTACTGGTGGGAAATTAAAA 240 consensus_6700#1 ------------------------------------------------------------ consensus_6700#0 TATGAGTTTTCTCCAATATGCTCATCACTGTTTTATTCTTATAAGTCTATTATGCCTGTT 300 consensus_6700#1 ------------------------------------------------------------ consensus_6700#0 TTACTAATCGTCAACTCATTTTGTGGACTATAGAAGTTAAAACAAACCTATTTTTGACTA 360 consensus_6700#1 ------------------------------------------------------------ consensus_6700#0 GTCATACTTAGTTGCAAATCATAACCTGTAAAACAGGGCGAATAATATCTAAAGAAGTCA 420 consensus_6700#1 ------------------------------------------------------------ consensus_6700#0 AAATAACCATTCCGTTGAATAGTAACAAACAACTTATGTTTCAGATGGCTGAACTATTTC 480 consensus_6700#1 ------------------------------------------------------------ consensus_6700#0 TAGACCCGTCTATTCGATCCTGGGTATTCCTTCCCCTTGTAATAATTACTTTCCTCTTTG 540 consensus_6700#1 ------------------------------------------------------------ consensus_6700#0 GAGTTTTACGCCACTACATGACTATCATGTTCAGTAGTGAGAAAAAGGGTGAACTCGAGA 600 consensus_6700#1 ------------------------------------------------------------ consensus_6700#0 ATATCGGTGATAGGTAAAGCCCTGAGTTCAACATTNTTACCATTTCAGTCATGCTTTAAT 660 consensus_6700#1 ------------------------------------------------------------ consensus_6700#0 CCGCAGCAGACTTTTACGTGAAAATGGAAGATTCTTGCCGGCAAAAGCTTTTAAAATGCG 720 consensus_6700#1 ------------------------------------------------------------ consensus_6700#0 CAAGTATTTCTTCAATGATAAGGAGCATGGGTTTTTTAAAACACAAAAGCGAGAAAGTCC 780 consensus_6700#1 ------------------------------------------------------------ consensus_6700#0 AATGAATAATCCGATGGCTGATCCTTCAATGGCAACTGAGATGCTTAGAAGCAATGCCCT 840 consensus_6700#1 ------------------------------------------------------------ consensus_6700#0 CAATATGGTTCCAATGATTGTTATTGGCAGCTGGATCAACTGGGCTTTTTCAGGTTTTCT 900 consensus_6700#1 ------------------------------------------------------------ consensus_6700#0 GACCACAAAAGTCCCGTTTCCACTCACTTATCGATTTAAGCCCATGCTTCAAAGGGGCTG 960 consensus_6700#1 ------------------------------------------------------------ consensus_6700#0 TGAGTCGCTTACTTCTCTGGATGCACCTTGGGTTAGCTCTGCATCTTGGTATTTTCTGAA 1020 consensus_6700#1 ------------------------------------------------------------ consensus_6700#0 CATATTTGGCCTCAGAAGTATGTATGGTTTGGTACTTGGTTCGGACAACGCAGCTGATAA 1080 consensus_6700#1 --------------------TGTATGGTTTGGTACTTGGTTGGGACAACGCAGCTGATAA 40 ********************* ****************** consensus_6700#0 CTCGATGATTTTGACAGATCATCAAGTACCTACACCACAAGCTCCACAGGATATGCAAAA 1140 consensus_6700#1 CTTAATGATTTTGTCAGATCATCAAGTGCATACACCACAAGGTCCACAGGATATGCAAAA 100 ** ********* ************* * *********** ****************** consensus_6700#0 GGCGTTCAAGGCAGAATGGGAAGCATTGGAAATAGTTGATCACCAATGGGCTCTAGCAGA 1200 consensus_6700#1 GGCGTTCAAGGCAGAATGGGAAGCATTGGAAATAGTTGATCGCCAATGGGCTATAGCAGA 160 ***************************************** ********** ******* consensus_6700#0 TTGTGAAACAAGACTACTGAACAGAT-TATCTTGATGCGGTTAGTTCTTCT-CTAAATAT 1258 consensus_6700#1 TTGTGAAACAAGAATGTTGATCAGATGTATCGTGATGCGTGTAGTTCTTATATTAAATAT 220 ************* * *** ***** **** ******* ******** * ******* consensus_6700#0 TAATATACTTTGTTTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGC 1318 consensus_6700#1 TAATATAC---------------------------------------------------- 228 ******** consensus_6700#0 TGCATTACCGTACTGCGTA 1337 consensus_6700#1 ------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||