cluster # 6701

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Schistosoma mansoni
cluster # 6701 cluster # 6701 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6701#0 length = 964 sequences # 2

consensus_6701#1 length = 886 sequences # 2

consensusID : consensus_6701#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 964
fasta sequence

                              [GATTCTCCTATTATTTCCAAACAGAAGATTTCACTTCCAATACATCTGTAACAATTCAATCAAAACTAGTTGAAACATTTTGGTCTAAATCACCTCAAAACATCGAATCTATATTTGAGGTTTCTAAAATGTATCAGATTTCATTATCTAAAACTGGTTACAAATTTGATATCATTAACAAAACAGATGTTAAATACCAATCCACAGGTTTCGATTGGTATGTAAAATCAACTAGACTTTCACTTGTTGAAGTGTTTGTTTATAACTATCCTGTTTCAGAGGATTTACGGCAACCACTATCAGCTGTATTAATTTCTATTATTGGTGAGGGACATCGCGCAAATCATTTAACAAATGATGACGGTGTTGTACGCTTTGTCGGTTTATCTCCAGGACAGTATTATATACGTCCAATGATGAAGGAGTATTCATTTACTGTTAAATCGCCTGATCAGTCTGAATCTGGCCAAGCTATTCCTGTACAGGTAGAAGAAGGAAAATCAGCTGTCATCATATTGTCTGCACTTCGAATTGCTTTTTCCGCTTCAGGCGTTGTTACTTCGTTAGCTGGTATCCCAGAGTCTGGTGTTTTAGTTGAAGCTTCCTGGTTACCTGGAACACAAAATACCATACATAACGATTTGTTGCACTTAAAATCAAACATCAACATGACTTGCCAACTTCGAGATGATCAAATTAGTATTATTCCACGGGAACAATCTGTAACAGATTCAAACGGCAATTTTCGTATTAGAGGTCTTTTGCCAGGTTGTGTATACAGGATCTCTGCACACAAATCCTAATATTTTACCAAACCTTATAATGGATCAAGTGACAAGAGAATCAAGTAGATTATCTTCTCGCAATGATGTTGAACACGCAGTTCCTGATCATGTAAATTTGCAGATGCTAACCTCTGACACANATGGACTACATTTCTACGTAATTCGCCACCTTTGTACTT]

[-] EMBL CD185804             [GATTCTCCTATTATTTCCAAACAGAAGATTTCACTTCCAATACATCTGTAACAATTCAATCAAAACTAGTTGAAACATTTTGGTCTAAATCACCTCAAAACATCGAATCTATATTTGAGGTTTCTAAAATGTATCAGATTTCATTATCTAAAACTGGTTACAAATTTGATATCATTAACAAAACAGATGTTAAATACCAATCCACAGGTTTCGATTGGTATGTAAAATCAACTAGACTTTCACTTGTTGAAGTGTTTGTTTATAACTATCCTGTTTCAGAGGATTTACGGCAACCACTATCAGCTGTATTAATTTCTATTATTGGTGAGGGACATCGCGCAAATCATTTAACAAATGATGACGGTGTTGTACGCTTTGTCGGTTTATCTCCAGGACAGTATTATATACGTCCAATGATGAAGGAGTATTCATTTACTGTTAAATCGCCTGATCAGTCTGAATCTGGCCAAGCTATTCCTGTACAGGTAGAAGAAGGAAAATCAGCTGTCATCATATTGTCTGCACTTCGAATTGCTTTTTCCGCTTCAGGCGTTGTTACTTCGTT                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD079968             [                                                                                                                                                                                                                                                                        gagggCCTGTTTCAGAGGATTTACGGCAACCACTATCAGCTGTATTAATTTCTATTATTGGTGAGGGACATCGCGCAAATCATTTAACAAATGATGACGGTGTTGTACGCTTTGTCGGTTTATCTCCAGGACAGTATTATATACGTCCAATGATGAAGGAGTATTCATTTACTGTTAAATCGCCTGATCAGTCTGAATCTGGCCAAGCTATTCCTGTACAGGTAGAAGAAGGAAAATCAGCTGTCATCATATTGTCTGCACTTCGAATTGCTTTTTCCGCTTCAGGCGTTGTTACTTCGTTAGCTGGTATCCCAGAGTCTGGTGTTTTAGTTGAAGCTTCCTGGTTACCTGGAACACAAAATACCATACATAACGATTTGTTGCACTTAAAATCAAACATCAACATGACTTGCCAACTTCGAGATGATCAAATTAGTATTATTCCACGGGAACAATCTGTAACAGATTCAAACGGCAATTTTCGTATTAGAGGTCTTTTGCCAGGTTGTGTATACAGGATCTCTGCACACAAATCCTAATATTTTACCAAACCTTATAATGGATCAAGTGACAAGAGAATCAAGTAGATTATCTTCTCGCAATGATGTTGAACACGCAGTTCCTGATCATGTAAATTTGCAGATGCTAACCTCTGACACANATGGACTACATTTCTACGTAATTCGCCACCTTTGTACTT]




>consensus_6701#0
GATTCTCCTATTATTTCCAAACAGAAGATTTCACTTCCAATACATCTGTAACAATTCAAT
CAAAACTAGTTGAAACATTTTGGTCTAAATCACCTCAAAACATCGAATCTATATTTGAGG
TTTCTAAAATGTATCAGATTTCATTATCTAAAACTGGTTACAAATTTGATATCATTAACA
AAACAGATGTTAAATACCAATCCACAGGTTTCGATTGGTATGTAAAATCAACTAGACTTT
CACTTGTTGAAGTGTTTGTTTATAACTATCCTGTTTCAGAGGATTTACGGCAACCACTAT
CAGCTGTATTAATTTCTATTATTGGTGAGGGACATCGCGCAAATCATTTAACAAATGATG
ACGGTGTTGTACGCTTTGTCGGTTTATCTCCAGGACAGTATTATATACGTCCAATGATGA
AGGAGTATTCATTTACTGTTAAATCGCCTGATCAGTCTGAATCTGGCCAAGCTATTCCTG
TACAGGTAGAAGAAGGAAAATCAGCTGTCATCATATTGTCTGCACTTCGAATTGCTTTTT
CCGCTTCAGGCGTTGTTACTTCGTTAGCTGGTATCCCAGAGTCTGGTGTTTTAGTTGAAG
CTTCCTGGTTACCTGGAACACAAAATACCATACATAACGATTTGTTGCACTTAAAATCAA
ACATCAACATGACTTGCCAACTTCGAGATGATCAAATTAGTATTATTCCACGGGAACAAT
CTGTAACAGATTCAAACGGCAATTTTCGTATTAGAGGTCTTTTGCCAGGTTGTGTATACA
GGATCTCTGCACACAAATCCTAATATTTTACCAAACCTTATAATGGATCAAGTGACAAGA
GAATCAAGTAGATTATCTTCTCGCAATGATGTTGAACACGCAGTTCCTGATCATGTAAAT
TTGCAGATGCTAACCTCTGACACANATGGACTACATTTCTACGTAATTCGCCACCTTTGT
ACTT

consensusID : consensus_6701#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 886
fasta sequence

                              [CCTCGAGGCATGAATTCGGCACGAGGTGACTTGCCAACTTCGAGATGATCAAATTAGTATTATTCCACGGTGAACAATCTGTAACAGATTCAAACGGCAATTTTCGTATTAGAGGTCTTTTGCCAGGTTGTGTATACAGGATCTATGTGCACACAAATCCTAATATTTTACCAAACCTTATAATGGATCAAGTGACAAGAGAATCAAGTAGATTATCTTCTCGCAATGATGTTGAACACGCAGTTCCTGATCATGTAAATTTGCAGATGCTAACCTCTGACACAAATGGACTACATTTCTACGTAATTCGCCACCTTTGTACTTCTTTGATTACTGTTAATGTACAAACTCCTGATAGTTACCTACCTACTTTACGATTAATAGTATTTCCTGTTGGTCATCCAGAAAATATTGTTGCTAAACATGACTTCGGTTTAGATTCTTCATTATTCAGTTTGTCCGGATCAAAACTTATTCCAATGATTGGACGAGAACATGTAATACGTTTAATATCAGATCTTGAACCAAAGTTTTATATCAATGTTAATGCACAGAATATTATTTTCAAACCAAAATGGAATGTTAGTGAACATTTTAATTTTCAATTCAATCCTAAACTACGTAATACACTTAGTGATTAGGTTAATATCCTCAATAATGGATTGTCTCATTCATCTACTTTGTCAATTTATGTCTAGTATTCGAATGTTTCTTGTTTTATGTTTAATAAATTGTTCTTTTTTTCTCTGTATAATCTGACGTTATTTTCTTTCGACATAATATACGTGTGTATAAATATATATAAGACTTGTTCATAACTTATTTTGTAACTGTCTAGTTGTTTTTTTATTGTTGTAAAGTATGTGCAGTAAATAAACTCCATGTG]

[+] EMBL CD077350             [CCTCGAGGCATGAATTCGGCACGAGGTGACTTGCCAACTTCGAGATGATCAAATTAGTATTATTCCACGGTGAACAATCTGTAACAGATTCAAACGGCAATTTTCGTATTAGAGGTCTTTTGCCAGGTTGTGTATACAGGATCTATGTGCACACAAATCCTAATATTTTACCAAACCTTATAATGGATCAAGTGACAAGAGAATCAAGTAGATTATCTTCTCGCAATGATGTTGAACACGCAGTTCCTGATCATGTAAATTTGCAGATGCTAACCTCTGACACAAATGGACTACATTTCTACGTAATTCGCCACCTTTGTACTTCTTTGATTACTGTTAATGTACAAACTCCTGATAGTTACCTACCTACTTTACGATTAATAGTATTTCCTGTTGGTCATCCAGAAAATATTGTTGCTAAACATGACTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CD074163             [                                                                                                                                                                                                                                                                                            AATGGACTACATTTCTACGTAATTCGCCACCTTTGTACTTCTTTGATTACTGTTAATGTACAAACTCCTGATAGTTACCTACCTACTTTACGATTAATAGTATTTCCTGTTGGTCATCCAGAAAATATTGTTGCTAAACATGACTTCGGTTTAGATTCTTCATTATTCAGTTTGTCCGGATCAAAACTTATTCCAATGATTGGACGAGAACATGTAATACGTTTAATATCAGATCTTGAACCAAAGTTTTATATCAATGTTAATGCACAGAATATTATTTTCAAACCAAAATGGAATGTTAGTGAACATTTTAATTTTCAATTCAATCCTAAACTACGTAATACACTTAGTGATTAGGTTAATATCCTCAATAATGGATTGTCTCATTCATCTACTTTGTCAATTTATGTCTAGTATTCGAATGTTTCTTGTTTTATGTTTAATAAATTGTTCTTTTTTTCTCTGTATAATCTGACGTTATTTTCTTTCGACATAATATACGTGTGTATAAATATATATAAGACTTGTTCATAACTTATTTTGTAACTGTCTAGTTGTTTTTTTATTGTTGTAAAGTATGTGCAGTAAATAAACTCCATGTG]




>consensus_6701#1
CCTCGAGGCATGAATTCGGCACGAGGTGACTTGCCAACTTCGAGATGATCAAATTAGTAT
TATTCCACGGTGAACAATCTGTAACAGATTCAAACGGCAATTTTCGTATTAGAGGTCTTT
TGCCAGGTTGTGTATACAGGATCTATGTGCACACAAATCCTAATATTTTACCAAACCTTA
TAATGGATCAAGTGACAAGAGAATCAAGTAGATTATCTTCTCGCAATGATGTTGAACACG
CAGTTCCTGATCATGTAAATTTGCAGATGCTAACCTCTGACACAAATGGACTACATTTCT
ACGTAATTCGCCACCTTTGTACTTCTTTGATTACTGTTAATGTACAAACTCCTGATAGTT
ACCTACCTACTTTACGATTAATAGTATTTCCTGTTGGTCATCCAGAAAATATTGTTGCTA
AACATGACTTCGGTTTAGATTCTTCATTATTCAGTTTGTCCGGATCAAAACTTATTCCAA
TGATTGGACGAGAACATGTAATACGTTTAATATCAGATCTTGAACCAAAGTTTTATATCA
ATGTTAATGCACAGAATATTATTTTCAAACCAAAATGGAATGTTAGTGAACATTTTAATT
TTCAATTCAATCCTAAACTACGTAATACACTTAGTGATTAGGTTAATATCCTCAATAATG
GATTGTCTCATTCATCTACTTTGTCAATTTATGTCTAGTATTCGAATGTTTCTTGTTTTA
TGTTTAATAAATTGTTCTTTTTTTCTCTGTATAATCTGACGTTATTTTCTTTCGACATAA
TATACGTGTGTATAAATATATATAAGACTTGTTCATAACTTATTTTGTAACTGTCTAGTT
GTTTTTTTATTGTTGTAAAGTATGTGCAGTAAATAAACTCCATGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6701#0      GATTCTCCTATTATTTCCAAACAGAAGATTTCACTTCCAATACATCTGTAACAATTCAAT 60
consensus_6701#1      CCTCGAGGCATGAATTC--GGCACGAGGTGAC-TTGCCAAC---TTCGAGATGATCAAAT 54
                        *      ** * ***    **  ** *  *  * ****    *  *  *  **  ***

consensus_6701#0      CAAAACTAGTTGAAACATTTTGGTCTAAATCACCTCAAAACATCGAATCT-ATATTTGAG 119
consensus_6701#1      TAGTATTATTCCACGGTGAACAATCTGTAACAGATTCAAACGGCAATTTTCGTATTAGAG 114
                       *  * ** *  *          ***  * **  *  ****  * * * *  **** ***

consensus_6701#0      GTTTCTAAAATGTATCAGATTTCATTATCTAAAACTGGTTACAAATT-TGATATCATTAA 178
consensus_6701#1      GTCTTTTGCCAGGTTGTGTATACAGGATCTATG--TGCACACAAATCCTAATATT-TTAC 171
                      ** * *     *  *  *  * **  *****    **   ******  * ****  *** 

consensus_6701#0      CAAAACAGATGTTAAATACCAATCCACAGGTTTCGATTGGTATGTAAAATCAACTAGACT 238
consensus_6701#1      CAAACCTTATAATGGAT--CAAGTGACAAG---------------AGAATCAAGTAGATT 214
                      **** *  **  *  **  ***   *** *               * ****** **** *

consensus_6701#0      TTCACTTGTTGAAGTGTTTGTTTATAACTATCCTGTTTCAGAGGATTTACGGCAACCACT 298
consensus_6701#1      ATC--TTCTCGCAATGAT-GTT---GAACACGCAGTTCCTGATCATGTAA-------ATT 261
                       **  ** * * * ** * ***    *  *  * *** * **  ** **        * *

consensus_6701#0      ATCAGCTGTATTAATTTCTATTATTGGTGAGGGACATCGCGCAAATCATTTAACAAATGA 358
consensus_6701#1      TGCAGATG--CTAACCTCTGACACAAATGGACTACATTTC-TACGTAATTCGCCACCTTT 318
                        *** **   ***  ***   *    **    ****  *  *  * ***   **  *  

consensus_6701#0      TGACGGTGTTGTACGCTTTGTCGGTTTATCTCCAGGACAGTATTATATACGTCCAATGAT 418
consensus_6701#1      GTACTTCTTTGATTACTGTTAATGTACAAACTCCTGATAGTTACCTACCTACTTTACGAT 378
                        **    ***    ** *    **  *    *  ** ***    **        * ***

consensus_6701#0      GAAGGAGTATTCATTTACTGTTAAATCGCCTGATCAGTCTGAATCTGGCCAAGCTATTCC 478
consensus_6701#1      TAATAG-----TATTTCCTGTTGGTCATCCAGAAAATATTGTTGCTAAACATGACTTCGG 433
                       **         **** *****      ** **  *   **   **   ** *   *   

consensus_6701#0      TGTACAGGTAGAAGAAGGAAAATCAGCTGTCATCATATTGTCTGCACTTCGAATTGCTTT 538
consensus_6701#1      TTTAGATTCTTCATTATTCAGTTTGTCCGGATCAAAACTTATTCCAAT--GATTGGACGA 491
                      * ** *      *  *   *  *   * *     * * *   * ** *  ** * *    

consensus_6701#0      TTCCGCTTCAGGCGTTGTTACTTCGTTAGCTGGTATCCCAGAGTCTGGTGTTTTAGTTGA 598
consensus_6701#1      GAACATGTAATACGT--TTAAT--ATCAGATCTTGAACCAAAGTTTTATATCAATGTTAA 547
                         *   * *  ***  *** *   * ** *  *   *** *** *  * *    *** *

consensus_6701#0      AGCTTCCTG-GTTACCTGGAACACAAAATACCATACATAACGATTTGTTGCACTTAAAAT 657
consensus_6701#1      TGCACAGAATATTATTTTCAAACCAAAATGGAATGT-TAGTGAACATTTTAATTTTCAAT 606
                       **        ***  *  **  ******   **   **  **    **  * **  ***

consensus_6701#0      CAAACATCAACATGACTTGCCAACTTCGAGATGATCAAATTAGTATTATTCCACGGGAAC 717
consensus_6701#1      TCAATCCTAAACTACGTAATACACTTAG---TGATTAGGTTAATATCCTCAATAATGGAT 663
                        **    **  *   *     **** *   **** *  *** ***  *       * * 

consensus_6701#0      AATCTGTAACAGATTCAAACGGCAATTTTCGTATTAGAGGTCTTTTGCCAGGTTGTGTAT 777
consensus_6701#1      TGTCT-CATTCATCTACTTTGTCAATTTATGT-CTAGTATTCGAATGTTTCTTGTTTTAT 721
                        ***  *      *     * ******  **  ***   **   **     *  * ***

consensus_6701#0      ACAGGATCTCTGCACACAAATCCTAATATTTTACCAAACCTTATAATGGATCAAGTGACA 837
consensus_6701#1      GTTTAATAAATTGTTCTTTTTTTCTCTGTATAATCTGACGTTATTTTCTTTC----GACA 777
                           **   *         *     * * * * *  ** ****  *   **    ****

consensus_6701#0      AGAGAATCAAGTAGATTATCTTCTCGCAATGATGTTGAACACGCAGTTCCTGATCATGTA 897
consensus_6701#1      TAATATACGTGTGTATAAATATATATAAGACTTGTTCATAACTTATTTTGTAACTGTCTA 837
                        * *  *  **  ** *   * *   *    **** *  **  * **  * *   * **

consensus_6701#0      AATTTGCAGATGCTAACCTCTGACACANATGGACTACAT---TTCTACGTAATTCGCCAC 954
consensus_6701#1      GTTGTTTTTTTATTG--TTGTAAAGTATGTGCAGTAAATAAACTCCATGTG--------- 886
                        * *     *  *    * * *   *  ** * ** **    ** * **          

consensus_6701#0      CTTTGTACTT 964
consensus_6701#1      ----------