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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6704#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1043 fasta sequence
[AGGCCAAAGAATCTAGATATTGGCTTGAAAATGATGCAAAAATTAGAGCTGTTCACAAGGAGTTCCAACCTATGATGATTTTAGAGAGCTTGTCGCTGGATGCCATTTGAAGCCTCTGGATCGCTTAGAACTGACCAATACTG-TTGGTCAAAGGTCCAGCTGGAACTATTCAGCAATATTATCAAATAATAATAGCTTGTTTCTGGAACCTGGAATGAATTCAACTATCCCTA-TGAAATCCATTACCACTCCACA-GGAA-TTCGTTGTACAGTGGCGTCATATCAAATCATCATCCGCTAATACAAAT-GGCGCTTTATTAGAGTTATTGTTCAATCAAAATAATGAAGTATTAGAAAA-TCTTTTTAACACTGGACTGGGTGTGTCTTTTTTACCCGAAATACTTTCAGTATTAAATCATGCTGTTGATAACACGGACACTATATTATCATCATCTGATTATAATATCAACATCGTAATATCCAAGGTTTCTATGATTCTTGCAAGTTTTCAAAAGTCTAAACAATTTTCTTTAGCAGTCGATTGTTTGCTAGATAGTGAAAAAGAAACTGCACACCACTTAATTCAAAANATTAAAGACATCAGAGACAAACTTGGACTTTTTGAAGATGATGGTGAAACTTTGAGGAAAATTGCGGATACTTTTAAATTGAGTAATAGTTGTTATGCTGTAGATGATGTTAGTTCCTATGTCTAAAGGTATCTGAGACTTTCTTGAGTTTATTGTATTCGGAACTTGCATTCTGTTTATTCGGCACATGCATGTTATTGTTTGTCTTTGTATTCTCTTGAAACATCACTTCCAAAATATTCCCAGTTTAGACAGAAGCTCAACGTGCATTCAAGTTCTTGAGTCAAATTACAATTTTCCTTTATGGAACTAAATGTCCGTCATTCTTAACCTCAATATTTCGATCAACATGAATTTCGACCTATAAACTCTAAAAACATTTTTTACTTTATGAAAATAAAACTTTCCCTAATGTAAAGCATATTCCTTCCAATAGTATGCTAATAAACGTTCT]
[+] EMBL CD080341 [AGGCCAAAGAATCTAGATATTGGCTTGAAAATGATGCAAAAATTAGAGCTGTTCACAAGGAGTTCCAACCTATGATGATTTTAGAGAGCTTGTCGCTGGATGCCATTTGAAGCCTCTGGATCGCTTAGAACTGACCAATACTG TTGGTCAAAGGTCCAGCTGGAACTATTCAGCAATATTATCAAATAATAATAGCTTGTTTCTGGAACCTGGAATGAATTCAACTATCCCTA TGAAATCCATTACCACTCCACA GGAA TTCGTTGTACAGTGGCGTCATATCAAATCATCATCCGCTAATACAAAT GGCGCTTTATTAGAGTTATTGTTCAATCAAAATAATGAAGTATTAGAAAA TCTTTTTAACACTGGACTGGGTGTGTCTTTTTTACCCGAAATACTTTCAGTATTAAATCATGCTGTTGATAACACGGACACTATATTATCATCATCTGATTATAATATCAACATCGTAATATCCAAGGTTTCTATGATTCTTGCAAGTTTTCAAAAGTCTAAACAATTTTCTTTAGCAGTCGATTGTTTGCTAGATAGTGAAAAAGAAACTGCACACCACTTAATTCAAAANATTAAAGACATCAGAGACAAACTTGGACT ]
[+] EMBL BE505110 [ CCAACCTATGATGATTTTAGAGAGCTTGTCGCTGGATGCCATTTGAAGCCTCTGGATCGCTTAGAACTGACCAATACTGTTTGGTCAAAGGTCCAGCTGGAACTATTCAGCAATATTATCAAATAATAATAGCTTGTTTCTGGAACCTGGAATGAATTCAACTATCCCTATTGAAATCCATTACCACTCCACATGGAATTTCGTTGTACAGTGGCGTCATATCAAATCATCATCCGCTAATATAAATGGGCGCTTTATTAGAGTTATTGTTCAATCAAAATAATGAAGTATGAGAAAANTCTTTTTAACA ]
[-] EMBL AI977184 [ ACCACTTAATTCAAANAATTAAAGACATCAGAGACAAACTTGGACTTTTTGAAGATGATGGTGAAACTTTGAGGAAAATTGCGGATACTTTTAAATTGAGTAATAGTTGTTATGCTGTAGATGATGTTAGTTCCTATGTCTAAAGGTATCTGAGACTTTCTTGAGTTTATTGTATTCGGAACTTGCATTCTGTTTATTCGGCACATGCATGTTATTGTTTGTCTTTGTATTCTCTTGAAACATCACTTCCAAAATATTCCCAGTTTAGACAGAAGCTCAACGTGCATTCAAGTTCTTGAGTCAAATTACAATTTTCCTTTATGGAACTAAATGTCCGTCATTCTTAACCTCAATATTTCGATCAACATGAATTTCGACCTATAAACTCTAAAAACATTTTTTACTTTATGAAAATAAAACTTTCCCTAATGTAAAGCATATTCCTTCCAATAGTATGCTAATAAACGTTCT]
consensusID : consensus_6704#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 604 fasta sequence
[ATTCAAANAATTAAAGACATCAGAGACAAACTTGGACTTTTTGAAGATGATGGTGAAACTTTGAGGAAAATTGCGGATACTTTTAAATTGAGTAATAGTTGTTATGCTGTAGATGATGTTAGTTCCTATGTCTAAAGGTATCTGAGACTTTCTTGAGAAATTTTTCTTGAGTTTATTGTATTCGGAACTTGCATTCTGTTTATTCGGCACATGCATGTTATTGTTTGTCTTTGTATTCTCTTGAAACATCACTTCCAAAATATTCCCAGTTTAGACAGAAGCTCAACGTGCATTCAAGTTCTTGAGTCAAATTACAATTTTCCTTTATGGAACTAAATGTCCGTCATTCTTAACCTCAATATTTCGATCAACATGAATTTCGACCTATAAACTCTAAAAACATTTTTTACTTTATGAAAATAAAACTTTCCCTAATGTAAAGCATATTCCTTCCAATAGTATGCTAATAAACGTTCTTCACCACCTAACGTCAATTATGTTCGACACCCCACACAGTTCTGTTGTAAAACACAAAATAATGATTAAATCCTGATGATTTCTTATAAAGTAGCTGGTGATAATTGGTTCGAAACAATAAATGTCT]
[-] EMBL CD074260 [ATTCAAANAATTAAAGACATCAGAGACAAACTTGGACTTTTTGAAGATGATGGTGAAACTTTGAGGAAAATTGCGGATACTTTTAAATTGAGTAATAGTTGTTATGCTGTAGATGATGTTAGTTCCTATGTCTAAAGGTATCTGAGACTTTCTTGAGAAATTTTTCTTGAGTTTATTGTATTCGGAACTTGCATTCTGTTTATTCGGCACATGCATGTTATTGTTTGTCTTTGTATTCTCTTGAAACATCACTTCCAAAATATTCCCAGTTTAGACAGAAGCTCAACGTGCATTCAAGTTCTTGAGTCAAATTACAATTTTCCTTTATGGAACTAAATGTCCGTCATTCTTAACCTCAATATTTCGATCAACATGAATTTCGACCTATAAACTCTAAAAACATTTTTTACTTTATGAAAATAAAACTTTCCCTAATGTAAAGCATATTCCTTCCAATAGTATGCTAATAAACGTTCTTCACCACCTAACGTCAATTATGTTCGACACCCCACACAGTTCTGTTGTAAAACACAAAATAATGATTAAATCCTGATGATTTCTTATAAAGTAGCTGGTGATAATTGGTTCGAAACAATAAATGTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6704#0 AGGCCAAAGAATCTAGATATTGGCTTGAAAATGATGCAAAAATTAGAGCTGTTCACAAGG 60
consensus_6704#1 ------------------------------------------------------------
consensus_6704#0 AGTTCCAACCTATGATGATTTTAGAGAGCTTGTCGCTGGATGCCATTTGAAGCCTCTGGA 120
consensus_6704#1 ------------------------------------------------------------
consensus_6704#0 TCGCTTAGAACTGACCAATACTGTTGGTCAAAGGTCCAGCTGGAACTATTCAGCAATATT 180
consensus_6704#1 ------------------------------------------------------------
consensus_6704#0 ATCAAATAATAATAGCTTGTTTCTGGAACCTGGAATGAATTCAACTATCCCTATGAAATC 240
consensus_6704#1 ------------------------------------------------------------
consensus_6704#0 CATTACCACTCCACAGGAATTCGTTGTACAGTGGCGTCATATCAAATCATCATCCGCTAA 300
consensus_6704#1 ------------------------------------------------------------
consensus_6704#0 TACAAATGGCGCTTTATTAGAGTTATTGTTCAATCAAAATAATGAAGTATTAGAAAATCT 360
consensus_6704#1 ------------------------------------------------------------
consensus_6704#0 TTTTAACACTGGACTGGGTGTGTCTTTTTTACCCGAAATACTTTCAGTATTAAATCATGC 420
consensus_6704#1 ------------------------------------------------------------
consensus_6704#0 TGTTGATAACACGGACACTATATTATCATCATCTGATTATAATATCAACATCGTAATATC 480
consensus_6704#1 ------------------------------------------------------------
consensus_6704#0 CAAGGTTTCTATGATTCTTGCAAGTTTTCAAAAGTCTAAACAATTTTCTTTAGCAGTCGA 540
consensus_6704#1 ------------------------------------------------------------
consensus_6704#0 TTGTTTGCTAGATAGTGAAAAAGAAACTGCACACCACTTAATTCAAAANATTAAAGACAT 600
consensus_6704#1 ----------------------------------------ATTCAAANAATTAAAGACAT 20
******* ***********
consensus_6704#0 CAGAGACAAACTTGGACTTTTTGAAGATGATGGTGAAACTTTGAGGAAAATTGCGGATAC 660
consensus_6704#1 CAGAGACAAACTTGGACTTTTTGAAGATGATGGTGAAACTTTGAGGAAAATTGCGGATAC 80
************************************************************
consensus_6704#0 TTTTAAATTGAGTAATAGTTGTTATGCTGTAGATGATGTTAGTTCCTATGTCTAAAGGTA 720
consensus_6704#1 TTTTAAATTGAGTAATAGTTGTTATGCTGTAGATGATGTTAGTTCCTATGTCTAAAGGTA 140
************************************************************
consensus_6704#0 TCTGAGACTTTCTTGAG--------------TTTATTGTATTCGGAACTTGCATTCTGTT 766
consensus_6704#1 TCTGAGACTTTCTTGAGAAATTTTTCTTGAGTTTATTGTATTCGGAACTTGCATTCTGTT 200
***************** *****************************
consensus_6704#0 TATTCGGCACATGCATGTTATTGTTTGTCTTTGTATTCTCTTGAAACATCACTTCCAAAA 826
consensus_6704#1 TATTCGGCACATGCATGTTATTGTTTGTCTTTGTATTCTCTTGAAACATCACTTCCAAAA 260
************************************************************
consensus_6704#0 TATTCCCAGTTTAGACAGAAGCTCAACGTGCATTCAAGTTCTTGAGTCAAATTACAATTT 886
consensus_6704#1 TATTCCCAGTTTAGACAGAAGCTCAACGTGCATTCAAGTTCTTGAGTCAAATTACAATTT 320
************************************************************
consensus_6704#0 TCCTTTATGGAACTAAATGTCCGTCATTCTTAACCTCAATATTTCGATCAACATGAATTT 946
consensus_6704#1 TCCTTTATGGAACTAAATGTCCGTCATTCTTAACCTCAATATTTCGATCAACATGAATTT 380
************************************************************
consensus_6704#0 CGACCTATAAACTCTAAAAACATTTTTTACTTTATGAAAATAAAACTTTCCCTAATGTAA 1006
consensus_6704#1 CGACCTATAAACTCTAAAAACATTTTTTACTTTATGAAAATAAAACTTTCCCTAATGTAA 440
************************************************************
consensus_6704#0 AGCATATTCCTTCCAATAGTATGCTAATAAACGTTCT----------------------- 1043
consensus_6704#1 AGCATATTCCTTCCAATAGTATGCTAATAAACGTTCTTCACCACCTAACGTCAATTATGT 500
*************************************
consensus_6704#0 ------------------------------------------------------------
consensus_6704#1 TCGACACCCCACACAGTTCTGTTGTAAAACACAAAATAATGATTAAATCCTGATGATTTC 560
consensus_6704#0 --------------------------------------------
consensus_6704#1 TTATAAAGTAGCTGGTGATAATTGGTTCGAAACAATAAATGTCT 604
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||