cluster # 6707

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Schistosoma mansoni
cluster # 6707 cluster # 6707 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6707#0 length = 1015 sequences # 3

consensus_6707#1 length = 433 sequences # 1

consensusID : consensus_6707#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1015
fasta sequence

                              [ACAATTACTTTATTGTCATATGATTTATTCTGATGAAATGTATAAAAACAGAAAACTTGGAAATATGTCATCGGTTCTCTTGTAAAATTAAAATATATTGCAAATATGAATTGATGCTATAAATTTTAATATAAAGTGTAATACTGTCAATTAGATTGAGGTCAATCTACCGACTGTCAACTCCTTATTAAGAAGTAGAGGTTATCTTTTTTTGAAGAAAAAAGAAAAGAAATATACACGACACACCATAGGCGTATAAAAATTTAACAGTTATTAAGGACAAAATGTTGTATCATTCCCAATACAAAAAAGATATTTACAATAATATATATGTGAGCAAAATTAAACCAGTTGTCGTCATCGTTATCACAACATGGCACCTGAGAAAAATAGAAAACCCAATACAAACAACTTCAGATGAGATGAAAGAACAAATAAAATGAATGAATCTGAGGATAAAGTATAAGTCAGCAAAAAAAATTATTAAATATACAAGGTATTGAATTCAATCCAAATTGATATGTACGTAAAAGAACAAATCAAAAGAAAAACAAATGATGAAAATCATAAATTTGAAAAAAAAGAAAGGGAATGAGCAACAAAGTCAATATAAACAAATATAGAAAAAAATGTAGTGTAGTGATTGCAACTAATATTAGTAAATTGAATAGATTTCATCCATCATAGATTGTAATATCAACCTACNAGGATTCTTGNTTTNCTACAGATGTATCCAATGAACCATTTGNAATCCGAGTGNTGTTCCGGNACCTCGACCG-AAAATCG-ATCAG-TTACGATGGAC-AAGCAA--TATGCTGGA--TTTGAAATA--TCT-CAT-AGA-CACACTGTGCGATCTGGCTGAGGCAATNCTAGNGAGCATAATCGACTGCAGCTGTCTGGGATGATCGTCATCCATCACGACTAGTAGCGGGCAGAGATCAATGTGCATCTCANGACNGCTATAGCACGAGTGTGCTCTCTATCGTTGGTCTGGTAGAAAAGAGAGGTCTAAAGAACNCCC]

[+] EMBL CD074511             [ACAATTACTTTATTGTCATATGATTTATTCTGATGAAATGTATAAAAACAGAAAACTTGGAAATATGTCATCGGTTCTCTTGTAAAATTAAAATATATTGCAAATATGAATTGATGCTATAAATTTTAATATAAAGTGTAATACTGTCAATTAGATTGAGGTCAATCTACCGACTGTCAACTCCTTATTAAGAAGTAGAGGTTATCTTTTTTTGAAGAAAAAAGAAAAGAAATATACACGACACACCATAGGCGTATAAAAATTTAACAGTTATTAAGGACAAAATGTTGTATCATTCCCAATACAAAAAAGATATTTACAATAATATATATGTGAGCAAAATTAAACCAGTTGTCGTCATCGTTATCACAACATGGCACCTGAGAAAAATAGAAAACCCAATACAAACAACTTCAGATGAGATGAAAGAACAAATAAAATGAATGAATCTGAGGATAAAGTATAAGTCAGCAAAAAAAATTATTAAATATACAAGGTATTGAATTCAATCCAAATTGATATGTACGTAAAAGAACAAATCAAAAGAAAAACAAATGATGAAAATCATAAATTTGAAAAAAAAGAAAGGGAATGAGCAACAAAGTCAATATAAACAAATATAGAAAAAAATGTAGTGTAGTGATTGCAACTAATATTAGTAAATTGAATAGATTTCATCCATCATAGATTGTAATATCAACCTACNAGGATTCTTGNTTTNCTACAGATGTATCCAATGAACCATTTGNAATCCGAGTGNTGTTCCGGNACCTCGACCG AAAATCG ATCAG TTACGATGGAC AAGCAA  TATGCTGGA  TTTGAAATA  TCT CAT AGA CACACTGTGCGATCTGGCTGAGGCAATNCTAGNGAGCATAATCGACTGCAGCTGTCTGGGATGATCGTCATCCATCACGACTAGTAGCGGGCAGAGATCAATGTGCATCTCANGACNGCTATAGCACGAGTGTGCTCTCTATCGTTGGTCTGGTAGAAAAGAGAGGTCTAAAGAACNCCC]
[+] EMBL CD074333             [ACAATTACTTTATTGTCATATGATTTATTCTGATGAAATGTATAAAAACAGAAAACTTGGAAATATGTCATCGGTTCTCTTGTAAAATTAAAATATATTGCAAATATGAATTGATGCTATAAATTTTAATATAAAGTGTAATACTGTCAATTAGATTGAGGTCAATCTACCGACTGTCAACTCCTTATTAAGAAGTAGAGGTTATCTTTTTTTGAAGAAAAAAGAAAAGAAATATACACGACACACCATAGGCGTATAAAAATTTAACAGTTATTAAGGACAAAATGTTGTATCATTCCCAATACAAAAAAGATATTTACAATAATATATATGTGAGCAAAATTAAACCAGTTGTCGTCATCGTTATCACAACATGGCACCTGAGAAAAATAGAAAACCCAATACAAACAACTTCAGATGAGATGAAAGAACAAATAAAATGAATGAATCTGAGGATAAAGTATAAGTCAGCAAAAAAAATTATTAAATATACAAGGTATTGAATTCAATCCAAATTGATATGTACGTAAAAGAACAAATCAAAAGAAAAACAAATGATGAAAATCATAAATTTGAAAAAAAAGAAAGGGAATGAGCAACANAGTCAATATAAACAAAT                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CD080419             [                                                                                                                                                                                                           ATCTTTTTTTGAAGAANAAAGAAAAGAAATATACNCGACACACCATAGGCGTATAAAAATTTAACAGTTATTAAGGACAAAATGTTGTATCATTCCCAATACAAAAAAGATATTTACAATAATATATATGTGAGCAAAATTAAACCAGTTGTCGTCATCGTTATCACAACATGGCACCTGAGAAAAATAGAAAACCCAATACAAACAACTTCAGATGAGATGAAAGAACAAATAAAATGAATGAATCTGAGGATAAAGTATAAGTCAGCAAAAAAAATTATTAAATATACAAGGTATTGAATTCAATCCAAATTGATATGTACGTAAAAGAACAAATCAAAAGAAAAACAAATGATGAAAATCATAAATTTGAAAAAAAAGAAAGGGAATGAGCAACAAAGTCAATATAAACAAATATAGAAAAAAATGTAGTGTAGTGATTGCAACTAATATTAGTAAATTGAATAGATTTCATCCATCATAGATTGTAATATCAACCTAC AGGATTCTTGTTTTTCTACAGATGTATCCAATGAACCATTTG AATCCGAGTGTTGTTCCGG ACCTCGACCGAAAAATCGTATCAGTTTACGATGGACAAAGCAAATTATGCTGGATTTTTGAATTAATTCTCCATCAGAGCACca                                                                                                                                                                               ]




>consensus_6707#0
ACAATTACTTTATTGTCATATGATTTATTCTGATGAAATGTATAAAAACAGAAAACTTGG
AAATATGTCATCGGTTCTCTTGTAAAATTAAAATATATTGCAAATATGAATTGATGCTAT
AAATTTTAATATAAAGTGTAATACTGTCAATTAGATTGAGGTCAATCTACCGACTGTCAA
CTCCTTATTAAGAAGTAGAGGTTATCTTTTTTTGAAGAAAAAAGAAAAGAAATATACACG
ACACACCATAGGCGTATAAAAATTTAACAGTTATTAAGGACAAAATGTTGTATCATTCCC
AATACAAAAAAGATATTTACAATAATATATATGTGAGCAAAATTAAACCAGTTGTCGTCA
TCGTTATCACAACATGGCACCTGAGAAAAATAGAAAACCCAATACAAACAACTTCAGATG
AGATGAAAGAACAAATAAAATGAATGAATCTGAGGATAAAGTATAAGTCAGCAAAAAAAA
TTATTAAATATACAAGGTATTGAATTCAATCCAAATTGATATGTACGTAAAAGAACAAAT
CAAAAGAAAAACAAATGATGAAAATCATAAATTTGAAAAAAAAGAAAGGGAATGAGCAAC
AAAGTCAATATAAACAAATATAGAAAAAAATGTAGTGTAGTGATTGCAACTAATATTAGT
AAATTGAATAGATTTCATCCATCATAGATTGTAATATCAACCTACNAGGATTCTTGNTTT
NCTACAGATGTATCCAATGAACCATTTGNAATCCGAGTGNTGTTCCGGNACCTCGACCGA
AAATCGATCAGTTACGATGGACAAGCAATATGCTGGATTTGAAATATCTCATAGACACAC
TGTGCGATCTGGCTGAGGCAATNCTAGNGAGCATAATCGACTGCAGCTGTCTGGGATGAT
CGTCATCCATCACGACTAGTAGCGGGCAGAGATCAATGTGCATCTCANGACNGCTATAGC
ACGAGTGTGCTCTCTATCGTTGGTCTGGTAGAAAAGAGAGGTCTAAAGAACNCCC

consensusID : consensus_6707#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 433
fasta sequence

                              [GCAACAAAGTCAATATAAACAAATATAGAAAAAAATGTAGTGTAGTGATTGCAACTAATATTAGTAAATTGAATAGATTTCATCCATCATAGATTGTAATATCAACCTACAGGATTCTTGTTTTTCTACAGATGTATCCAATGAACCATTTGAATCCGAGTGTTGTTCCGGACCTCGACCGAAAAATCGTATCAGTTTACGATGGACACTAAAGAAAGTAATAATGAAGCCAATAATAATTAAAAGCATTTAAAAAAATATAATATACAATATTGTTATATAATTATTTATTAAGATTAGAAAGCAAATAATAATAACTATATATTTTAACGTAATAGATGTATATAATATGATTTCATTTAGTATCTCAATTAACGTTATCAATTAATCAGATTGTCGTATTTTCATATGGATAGTCAACAGATTGTCACCT]

[-] EMBL CD083954             [GCAACAAAGTCAATATAAACAAATATAGAAAAAAATGTAGTGTAGTGATTGCAACTAATATTAGTAAATTGAATAGATTTCATCCATCATAGATTGTAATATCAACCTACAGGATTCTTGTTTTTCTACAGATGTATCCAATGAACCATTTGAATCCGAGTGTTGTTCCGGACCTCGACCGAAAAATCGTATCAGTTTACGATGGACACTAAAGAAAGTAATAATGAAGCCAATAATAATTAAAAGCATTTAAAAAAATATAATATACAATATTGTTATATAATTATTTATTAAGATTAGAAAGCAAATAATAATAACTATATATTTTAACGTAATAGATGTATATAATATGATTTCATTTAGTATCTCAATTAACGTTATCAATTAATCAGATTGTCGTATTTTCATATGGATAGTCAACAGATTGTCACCT]




>consensus_6707#1
GCAACAAAGTCAATATAAACAAATATAGAAAAAAATGTAGTGTAGTGATTGCAACTAATA
TTAGTAAATTGAATAGATTTCATCCATCATAGATTGTAATATCAACCTACAGGATTCTTG
TTTTTCTACAGATGTATCCAATGAACCATTTGAATCCGAGTGTTGTTCCGGACCTCGACC
GAAAAATCGTATCAGTTTACGATGGACACTAAAGAAAGTAATAATGAAGCCAATAATAAT
TAAAAGCATTTAAAAAAATATAATATACAATATTGTTATATAATTATTTATTAAGATTAG
AAAGCAAATAATAATAACTATATATTTTAACGTAATAGATGTATATAATATGATTTCATT
TAGTATCTCAATTAACGTTATCAATTAATCAGATTGTCGTATTTTCATATGGATAGTCAA
CAGATTGTCACCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6707#0      ACAATTACTTTATTGTCATATGATTTATTCTGATGAAATGTATAAAAACAGAAAACTTGG 60
consensus_6707#1      ------------------------------------------------------------
                                                                                  

consensus_6707#0      AAATATGTCATCGGTTCTCTTGTAAAATTAAAATATATTGCAAATATGAATTGATGCTAT 120
consensus_6707#1      ------------------------------------------------------------
                                                                                  

consensus_6707#0      AAATTTTAATATAAAGTGTAATACTGTCAATTAGATTGAGGTCAATCTACCGACTGTCAA 180
consensus_6707#1      ------------------------------------------------------------
                                                                                  

consensus_6707#0      CTCCTTATTAAGAAGTAGAGGTTATCTTTTTTTGAAGAAAAAAGAAAAGAAATATACACG 240
consensus_6707#1      ------------------------------------------------------------
                                                                                  

consensus_6707#0      ACACACCATAGGCGTATAAAAATTTAACAGTTATTAAGGACAAAATGTTGTATCATTCCC 300
consensus_6707#1      ------------------------------------------------------------
                                                                                  

consensus_6707#0      AATACAAAAAAGATATTTACAATAATATATATGTGAGCAAAATTAAACCAGTTGTCGTCA 360
consensus_6707#1      ------------------------------------------------------------
                                                                                  

consensus_6707#0      TCGTTATCACAACATGGCACCTGAGAAAAATAGAAAACCCAATACAAACAACTTCAGATG 420
consensus_6707#1      ------------------------------------------------------------
                                                                                  

consensus_6707#0      AGATGAAAGAACAAATAAAATGAATGAATCTGAGGATAAAGTATAAGTCAGCAAAAAAAA 480
consensus_6707#1      ------------------------------------------------------------
                                                                                  

consensus_6707#0      TTATTAAATATACAAGGTATTGAATTCAATCCAAATTGATATGTACGTAAAAGAACAAAT 540
consensus_6707#1      ------------------------------------------------------------
                                                                                  

consensus_6707#0      CAAAAGAAAAACAAATGATGAAAATCATAAATTTGAAAAAAAAGAAAGGGAATGAGCAAC 600
consensus_6707#1      -------------------------------------------------------GCAAC 5
                                                                             *****

consensus_6707#0      AAAGTCAATATAAACAAATATAGAAAAAAATGTAGTGTAGTGATTGCAACTAATATTAGT 660
consensus_6707#1      AAAGTCAATATAAACAAATATAGAAAAAAATGTAGTGTAGTGATTGCAACTAATATTAGT 65
                      ************************************************************

consensus_6707#0      AAATTGAATAGATTTCATCCATCATAGATTGTAATATCAACCTACNAGGATTCTTGNTTT 720
consensus_6707#1      AAATTGAATAGATTTCATCCATCATAGATTGTAATATCAACCTACA-GGATTCTTGTTTT 124
                      *********************************************  ********* ***

consensus_6707#0      NCTACAGATGTATCCAATGAACCATTTGNAATCCGAGTGNTGTTCCGGNACCTCGACCGA 780
consensus_6707#1      TCTACAGATGTATCCAATGAACCATTTGAA-TCCGAGTGTTGTTCCGGA-CCTCGACCGA 182
                       *************************** * ******** ********  **********

consensus_6707#0      AAA-TCG-ATCAGTT-ACGATGGACAAGCAATATGCTGGATTTGAAATATCTCATAGACA 837
consensus_6707#1      AAAATCGTATCAGTTTACGATGGACACTAAAGAAAGTAATAATGAAGCCAATAATAATTA 242
                      *** *** ******* **********   ** *   *     ****     * ***   *

consensus_6707#0      CACTGTGCGATCTGGCTGAGGCAATNCTAGNGAGCATAATCGACTGCAGCTGTCTGGGAT 897
consensus_6707#1      AAA---GCATTTAAAAAAATATAATATACAATATTGTTATATAAT-TATTTATTAAGATT 298
                       *    **  *       *   ***       *   * **  * *  *  * *   *  *

consensus_6707#0      -GATCGTCATCCATCACGACTA-GTAGCGGGCAGAGATCAATGTGCATCTCANGACNGC- 954
consensus_6707#1      AGAAAGCAAATAATAATAACTATATATTTTAACGTAATAGATGTATATAATATGATTTCA 358
                       **  *  *   ** *  ****  **       *  **  ****  **   * **   * 

consensus_6707#0      TATAGCACGAGTGTGCTCTCTATCG-TTGGTCTGGTAG----------AAAAGAGAGGTC 1003
consensus_6707#1      TTTAGTATCTCAATTAACGTTATCAATTAATCAGATTGTCGTATTTTCATATGGATAGTC 418
                      * *** *      *   *  ****  **  ** * * *          * * *    ***

consensus_6707#0      TAAAGAACNCCC--- 1015
consensus_6707#1      AACAGATTGTCACCT 433
                       * ***    *