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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6708#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 712 fasta sequence
[TAACAGTAGTAGTCTTCGCTACTCTGGTCACGTTTATTTTCGTTTACTTGGTAATTGTTTCAAAGAAAACAACGGGTTTTTATTCAAAAATAACATTTTTTGCTTATTTCTTAAAGAAAATGGAAGACGACCATCTTAAAGATTTTTAAAAAAAAATAACAACAGTAAAACAAGTACAAGTAGTTTAGGGAGATAAAAATAAAATCAAAATTTCATGTTCAAGCATCTGATCATATTGACAGCTAACACAGCAAATATTGGAATAGTCACTAATCAATCAAGAAATGAAATTAAAAAAAAAGCCGTCAAACTCGAAATTATAGATTCAAAAATAGTATATAGTGTCTACAGATTAAAGAATATGACAATATAATAACGAAACTATTTGTAATGTGGAAACTGATTCCTGTTGTAGAGGCAAAAGATATTGTGTCACTTAATTCGATAATTGATATGCATATGCTTCGAACTGTCATCATTACAAGTTATATATATGGTTGTATTACCCAAGAAGAATCACAACTCTCTTGTACAATATTATAAACTGATACAATAAACTAACGAACATGAATACTAAATAATTAATATAGTTGGAATGTATTAGGTCACTAAGGAAAATTAATAATTTTTATACTTTTTTTTTAAAGTATACAAAAATAAACAAGTTGGTTTATGAAGGAAGTTGAAATCTTTGGTGCAGTGTGTACCACAC]
[+] EMBL CD074355 [TAACAGTAGTAGTCTTCGCTACTCTGGTCACGTTTATTTTCGTTTACTTGGTAATTGTTTCAAAGAAAACAACGGGTTTTTATTCAAAAATAACATTTTTTGCTTATTTCTTAAAGAAAATGGAAGACGACCATCTTAAAGATTTTTAAAAAAAAATAACAACAGTAAAACAAGTACAAGTAGTTTAGGGAGATAAAAATAAAATCAAAATTTCATGTTCAAGCATCTGATCATATTGACAGCTAACACAGCAAATATTGGAATAGTCACTAATCAATCAAGAAATGAAATTAAAAAAAAAGCCGTCAAACTCGAAATTATAGATTCAAAAATAGTATATAGTGTCTACAGATTAAAGAATATGACAATATAATAACGAAACTATTTGTAATGTGGAAACTGATTCCTGTTGTAGAGGCAAAAGATATTGTGTCACTTAATTCGATAATTGATATGCATATGCTTCGAACTGTCATCATTACAAGTTATATATATGGTTGTATTACCCAAGAAGAATCACAACTCTCTTGTACAATATTATAAACTGATACAATAAACTAACGAACATGAATACTAAATAATTAATATAGTTGGAATGTATTAGGTCACTAAGGAAAATTAATAATTTTTATACTTTTTTTTTAAAGTATACAAAAATAAACAAGTTGGTTTATGAA ]
[+] EMBL CD076512 [ taAACATTTTTTGCTTATTTCTTAAAGAAAATGGAAGACGACCATCTTAAAGATTTTTAAAAAAAAATAACAACAGTAAAACAAGTACAAGTAGTTTAGGGAGATAAAAATAAAATCAAAATTTCATGTTCAAGCATCTGATCATATTGACAGCTAACACAGCAAATATTGGAATAGTCACTAATCAATCAAGAAATGAAATTAAAAAAAAAGCCGTCAAACTCGAAATTATAGATTCAAAAATAGTATATAGTGTCTACAGATTAAAGAATATGACAATATAATAACGAAACTATTTGTAATGTGGAAACTGATTCCTGTTGTAGAGGCAAAAGATATTGTGTCACTTAATTCGATAATTGATATGCATATGCTTCGAACTGTCATCATTACAAGTTATATATATGGTTGTATTACCCAAGAAGAATCACAACTCTCTTGTACAATATTATAAACTGATACAATAAACTAACGAACATGAATACTAAATAATTAATATAGTTGGAATGTATTAGGTCACTAAGGAAAATTAATAATTTTTATACTTTTTTTTTAAAGTATACAAAAATAAACAAGTTGGTTTATGAAGGAAGTTGAAATCTTTGGTGCAGTGTGTACCACAC]
consensusID : consensus_6708#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 351 fasta sequence
[GCCTCTTTGTTTTGAAATAAAAACACACTGCACTCCTGTCATTAGTGTGGGGGAGAGAATAAAACAAAATATATACAGCTGTGCTACTGTCGGCTGCACCACCACTATCGTGTATCGCTAATCATCCTCGAGATGAGATATAAAAAAAGCCGTCGTCACTCGAGATATAGAGTCTCAAATAGTATATAGTGTCTACAGATTAAAGAATATGACCATATAATAACGAAACTATTTGTAATGTGGAAACTGATTCCTGTTGTAGAGGCAAAAGATATTGTGTCACTTAATTCGATAATTGATATGCATATGCTTCGAACTGTCATCATTACAAGTTATATATATGGTTGTATT]
[-] EMBL AI444556 [GCCTCTTTGTTTTGAAATAAAAACACACTGCACTCCTGTCATTAGTGTGGGGGAGAGAATAAAACAAAATATATACAGCTGTGCTACTGTCGGCTGCACCACCACTATCGTGTATCGCTAATCATCCTCGAGATGAGATATAAAAAAAGCCGTCGTCACTCGAGATATAGAGTCTCAAATAGTATATAGTGTCTACAGATTAAAGAATATGACCATATAATAACGAAACTATTTGTAATGTGGAAACTGATTCCTGTTGTAGAGGCAAAAGATATTGTGTCACTTAATTCGATAATTGATATGCATATGCTTCGAACTGTCATCATTACAAGTTATATATATGGTTGTATT]
[-] EMBL AI447083 [GCCTCTTTGTTTTGAAATAAAAACACACTGCACTCCTGTCATTAGTGTGGGGGAGAGAATAAAACAAAATATATACAGCTGTGCTACTGTCGGCTGCACCACCACTATCGTGTATCGCTAATCATCCTCGAGATGAGATATAAAAAAAGCCGTCGTCACTCGAGATATAGAGTCTCAAATAGTATATAGTGTCTACAGATTAAAGAATATGACCATATAATAACGAAACTATTTGTAATGTGGAAACTGATTCCTGTTGTAGAGGCAAAAGATATTGTGTCACTTAATTCGATAATTGATATGCATATGCTTCGAACTGTCATCATTACAAGTTATATATATGGTTGTATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6708#0 TAACAGTAGTAGTCTTCGCTACTCTGGTCACGTTTATTTTCGTTTACTTGGTAATTGTTT 60
consensus_6708#1 ------------------------------------------------------------
consensus_6708#0 CAAAGAAAACAACGGGTTTTTATTCAAAAATAACATTTTTTGCTTATTTCTTAAAGAAAA 120
consensus_6708#1 ------------------------------------------------------------
consensus_6708#0 TGGAAGACGACCATCTTAAAGATTTTTAAAAAAAAATAACAACA-GTAAAACAAGTACAA 179
consensus_6708#1 -------------------GCCTCTTTGTTTTGAAATAAAAACACACTGCACTCCTGTCA 41
* *** ****** **** ** * *
consensus_6708#0 GTAGTTTAGGGAGATAAAAATAAAATCAAAATTTCATGTTCAAGCATCTGATCATATTGA 239
consensus_6708#1 TTAGTGTGGGGGA--GAGAATAAAA-CAAAATAT-------ATACAGCTG-TGCTACTGT 90
**** * *** * ******* ****** * * ** *** * ** **
consensus_6708#0 CAGCTAACACAGCAAATATTGGAATAGTCACTAATCAATCAAGAAATGAAATTAAAAAAA 299
consensus_6708#1 CGGCTG-CACCACCACTATCGTG--TATCGCTAATCATCCTCGAGATGAGAT-ATAAAAA 146
* *** *** * * *** * ** ******* * ** **** ** * *****
consensus_6708#0 AAGCCGTCAA-ACTCGAAATTATAGATTCAAAAATAGTATATAGTGTCTACAGATTAAAG 358
consensus_6708#1 AAGCCGTCGTCACTCGAGAT-ATAGAGTCTCAAATAGTATATAGTGTCTACAGATTAAAG 205
******** ****** ** ***** ** *****************************
consensus_6708#0 AATATGACAATATAATAACGAAACTATTTGTAATGTGGAAACTGATTCCTGTTGTAGAGG 418
consensus_6708#1 AATATGACCATATAATAACGAAACTATTTGTAATGTGGAAACTGATTCCTGTTGTAGAGG 265
******** ***************************************************
consensus_6708#0 CAAAAGATATTGTGTCACTTAATTCGATAATTGATATGCATATGCTTCGAACTGTCATCA 478
consensus_6708#1 CAAAAGATATTGTGTCACTTAATTCGATAATTGATATGCATATGCTTCGAACTGTCATCA 325
************************************************************
consensus_6708#0 TTACAAGTTATATATATGGTTGTATTACCCAAGAAGAATCACAACTCTCTTGTACAATAT 538
consensus_6708#1 TTACAAGTTATATATATGGTTGTATT---------------------------------- 351
**************************
consensus_6708#0 TATAAACTGATACAATAAACTAACGAACATGAATACTAAATAATTAATATAGTTGGAATG 598
consensus_6708#1 ------------------------------------------------------------
consensus_6708#0 TATTAGGTCACTAAGGAAAATTAATAATTTTTATACTTTTTTTTTAAAGTATACAAAAAT 658
consensus_6708#1 ------------------------------------------------------------
consensus_6708#0 AAACAAGTTGGTTTATGAAGGAAGTTGAAATCTTTGGTGCAGTGTGTACCACAC 712
consensus_6708#1 ------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||