cluster # 6711

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Schistosoma mansoni
cluster # 6711 cluster # 6711 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6711#0 length = 836 sequences # 3

consensus_6711#1 length = 656 sequences # 1

consensusID : consensus_6711#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 836
fasta sequence

                              [TTTATGGCTGGACGTGGTTTGGAGAATTTGAAATCTGAATGGAGTATACAGGGTTCATTCAGTGCGTATGAAAGTGAAATACTAATTAATTGGTTTCGAAGTTTACCTCAAAAACGTGAAGATTCCTCCTTATCATCATCGTCATCATCATCCTTATCATGGATTATATCTGGACCAATGTCTTTGTTAGGCAATCTACGTTTAACATTACCAGCTTCTGCTCCTTATCCATCTACTCAAATTGTTTCATTGAATGAGTCTGGATTTGCTTTTACAAATCATCCACATTATGAGAATACAGTACTTCGTTATAGAACTGTTTTAGCTTATGGGATTTATAGTCGTAAACCTGTTCATGATGTATGGCATACATATCGTCATATTTTAAAAACCGATTTTGTAATAGTGGAAACTCATACCTGTCCGTCTAGAGGTGGATGTAGTAAACCGGAACTTTTTGATCTACTCGATACAAATCTTGCTGGACGCCCAGCACTATGTGAATCACTAATGAATATACAAGTTTTAAAAGCTGGTAGAACTCCGAGTACTTTGGAACCATATTTTACAGTTGTTTATGTTGAGCTGTACACAGGTAGAGTTGTACTATATGTGAATAAATTGACGTAATATATAAAAG-AAGCAAGTAGGCTGCTTACAGCTTTAAAGATTATGTACAGTGTCGCCATAAATGCAGGTTACCCAGATGCTTAATCATTTGTGATTACAATGTAAATCTCTTTGCAAACCGAGACTACTGTTCATTTCATTTTCAAAGTTTTATTAAATCTAATACTATCAAATGTTATGCATAGCATTTAAATAAAAGTTATTTG]

[+] EMBL CD081266             [TTTATGGCTGGACGTGGTTTGGAGAATTTGAAATCTGAATGGAGTATACAGGGTTCATTCAGTGCGTATGAAAGTGAAATACTAATTAATTGGTTTCGAAGTTTACCTCAAAAACGTGAAGATTCCTCCTTATCATCATCGTCATCATCATCCTTATCATGGATTATATCTGGACCAATGTCTTTGTTAGGCAATCTACGTTTAACATTACCAGCTTCTGCTCCTTATCCATCTACTCAAATTGTTTCATTGAATGAGTCTGGATTTGCTTTTACAAATCATCCACATTATGAGAATACAGTACTTCGTTATAGAACTGTTTTAGCTTATGGGATTTATAGTCGTAAACCTGTTCATGATGTATGGCATACATATCGTCATATTTTAAAAACCGATTTTGTAATAGTGGAAACTCATACCTGTCCGTCTAGAGGTGGATGTAGTAAACCGGAACTTTTTGATCTACTCGATACAAATCTTGCTGGACGCCCAGCACTATGTGAATCACTAATGAATATACAAGTTTTAAAAGCTGGTAGAACTCCGAGTACTTTGGAACCATATTTTACAGTTGTTTATGTTGAGCTGTACACAGGTAGAGTTGTACTATATGTGAATAAATTGACGTAATATATAAAAGAAAGC AGTAGGCTGCTTACAGCTNTAAAGATTATGTACAGTGTCGCCATANATGCAGGNTACCCAGATGCTTAATCATTTGTGATTACCATGTAAATCTCTTTGCAACCCGAGACTACTGTTCATTTCATTNTC AAGNTNTATTAAATCT ATACTATC AATG TNTGCATAGCATTT AATAAAAG TATT  ]
[-] EMBL CD075096             [                                                                                                                                                                                                                                                                                                                                    GCTTATGGGATTTATAGTCGTAAACCTGTTCATGATGTATGGCATACATATCGTCATATTTTAAAAACCGATTTTGTAATAGTGGAAACTCATACCTGTCCGTCTAGAGGTGGATGTAGTAAACCGGAACTTTTTGATCTACTCGATACAAATCTTGCTGGACGCCCAGCACTATGTGAATCACTAATGAATATACAAGTTTTAAAAGCTGGTAGAACTCCGAGTACTTTGGAACCATATTTTACAGTTGTTTATGTTGAGCTGTACACAGGTAGAGTTGTACTATATGTGAATAAATTGACGTAATATATAAAAG AAGCAAGTAGGCTGCTTACAGCTTTAAAGATTATGTACAGTGTCGCCATAAATGCAGGTTACCCAGATGCTTAATCATTTGTGATTACAATGTAAATCTCTTTGCAAACCGAGACTACTGTTCATTTCATTTTCAAAGTTTTATTAAATCTAATACTATCAAATGTTATGCATAGCATTTAAATAAAAGTTATTTG]
[-] EMBL CD074391             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                CGGAACTTTTTGATCTACTCGATACAAATCTTGCTGGACGCCCAGCACTATGTGAATCACTAATGAATATACAAGTTTTAAAAGCTGGTAGAACTCCGAGTACTTTGGAACCATATTTTACAGTTGTTTATGTTGAGCTGTACACAGGTAGAGTTGTACTATATGTGAATAAATTGACGTAATATATAAAAG AAGCAAGTAGGCTGCTTACAGCTTTAAAGATTATGTACAGTGTCGCCATAAATGCAGGTTACCCAGATGCTTAATCATTTGTGATTACAATGTAAATCTCTTTGCAAACCAAGACTACTGTTCATTTCATTTTCAAAGTTTTATTAAATCTAATACTATCAAATGTTATGCATAGCATTTAAATAAAAGTTATTTG]




>consensus_6711#0
TTTATGGCTGGACGTGGTTTGGAGAATTTGAAATCTGAATGGAGTATACAGGGTTCATTC
AGTGCGTATGAAAGTGAAATACTAATTAATTGGTTTCGAAGTTTACCTCAAAAACGTGAA
GATTCCTCCTTATCATCATCGTCATCATCATCCTTATCATGGATTATATCTGGACCAATG
TCTTTGTTAGGCAATCTACGTTTAACATTACCAGCTTCTGCTCCTTATCCATCTACTCAA
ATTGTTTCATTGAATGAGTCTGGATTTGCTTTTACAAATCATCCACATTATGAGAATACA
GTACTTCGTTATAGAACTGTTTTAGCTTATGGGATTTATAGTCGTAAACCTGTTCATGAT
GTATGGCATACATATCGTCATATTTTAAAAACCGATTTTGTAATAGTGGAAACTCATACC
TGTCCGTCTAGAGGTGGATGTAGTAAACCGGAACTTTTTGATCTACTCGATACAAATCTT
GCTGGACGCCCAGCACTATGTGAATCACTAATGAATATACAAGTTTTAAAAGCTGGTAGA
ACTCCGAGTACTTTGGAACCATATTTTACAGTTGTTTATGTTGAGCTGTACACAGGTAGA
GTTGTACTATATGTGAATAAATTGACGTAATATATAAAAGAAGCAAGTAGGCTGCTTACA
GCTTTAAAGATTATGTACAGTGTCGCCATAAATGCAGGTTACCCAGATGCTTAATCATTT
GTGATTACAATGTAAATCTCTTTGCAAACCGAGACTACTGTTCATTTCATTTTCAAAGTT
TTATTAAATCTAATACTATCAAATGTTATGCATAGCATTTAAATAAAAGTTATTTG

consensusID : consensus_6711#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 656
fasta sequence

                              [TCGGCACGAGGGGCAATCTACGTTTAACATTACCAGCTTCTGCTCCTTATCCATCTACTCAAATTGTTTCATTGAATGAGTCTGGATTTGCTTTTACAAATCATCCACATTATGAGAATACAGTACTTCGTTATAGAACTGTTTTAGCTTATGGGATTTATAGTCGTAAACCTGTTCATGATGTATGGCATACATATCGTCATATTTTAAAAACCGATTTTGTAATAGTGGAAACTCATACCTGTCCGTCTAGAGGTGGATGTAGTAAACCGGAACTTTTTGATCTACTCGATACAAATCTTGCTGGACGCCCAGCACTATGTGAATCACTAATGAATATACAAGTTTTAAAAGCTGGTAGAACTCCGAGTACTTTGGAACCATATTTTACAGTTGTTTATGTTGAGCTGTACACAGGTAGAGTTGTACTATATGTGAATAAATTGACGTAATATATAAAAGAAGCAAGTAGGCTGCTTACAGCTTTAAAGATTATGTACAGTGTCGCCATAAATGCAGGTTACCCAGATGCTTAATCATTTGTGATTACAATGTAAATCTCTTNTGCAACCGAGACTACTGTTCATTTCATTNTCAAAGTTNTATTAAATCTAATACTATCAAATGTTATGCATAGCATTTAAATAAAGTTATTT]

[+] EMBL CD080480             [TCGGCACGAGGGGCAATCTACGTTTAACATTACCAGCTTCTGCTCCTTATCCATCTACTCAAATTGTTTCATTGAATGAGTCTGGATTTGCTTTTACAAATCATCCACATTATGAGAATACAGTACTTCGTTATAGAACTGTTTTAGCTTATGGGATTTATAGTCGTAAACCTGTTCATGATGTATGGCATACATATCGTCATATTTTAAAAACCGATTTTGTAATAGTGGAAACTCATACCTGTCCGTCTAGAGGTGGATGTAGTAAACCGGAACTTTTTGATCTACTCGATACAAATCTTGCTGGACGCCCAGCACTATGTGAATCACTAATGAATATACAAGTTTTAAAAGCTGGTAGAACTCCGAGTACTTTGGAACCATATTTTACAGTTGTTTATGTTGAGCTGTACACAGGTAGAGTTGTACTATATGTGAATAAATTGACGTAATATATAAAAGAAGCAAGTAGGCTGCTTACAGCTTTAAAGATTATGTACAGTGTCGCCATAAATGCAGGTTACCCAGATGCTTAATCATTTGTGATTACAATGTAAATCTCTTNTGCAACCGAGACTACTGTTCATTTCATTNTCAAAGTTNTATTAAATCTAATACTATCAAATGTTATGCATAGCATTTAAATAAAGTTATTT]




>consensus_6711#1
TCGGCACGAGGGGCAATCTACGTTTAACATTACCAGCTTCTGCTCCTTATCCATCTACTC
AAATTGTTTCATTGAATGAGTCTGGATTTGCTTTTACAAATCATCCACATTATGAGAATA
CAGTACTTCGTTATAGAACTGTTTTAGCTTATGGGATTTATAGTCGTAAACCTGTTCATG
ATGTATGGCATACATATCGTCATATTTTAAAAACCGATTTTGTAATAGTGGAAACTCATA
CCTGTCCGTCTAGAGGTGGATGTAGTAAACCGGAACTTTTTGATCTACTCGATACAAATC
TTGCTGGACGCCCAGCACTATGTGAATCACTAATGAATATACAAGTTTTAAAAGCTGGTA
GAACTCCGAGTACTTTGGAACCATATTTTACAGTTGTTTATGTTGAGCTGTACACAGGTA
GAGTTGTACTATATGTGAATAAATTGACGTAATATATAAAAGAAGCAAGTAGGCTGCTTA
CAGCTTTAAAGATTATGTACAGTGTCGCCATAAATGCAGGTTACCCAGATGCTTAATCAT
TTGTGATTACAATGTAAATCTCTTNTGCAACCGAGACTACTGTTCATTTCATTNTCAAAG
TTNTATTAAATCTAATACTATCAAATGTTATGCATAGCATTTAAATAAAGTTATTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6711#0      TTTATGGCTGGACGTGGTTTGGAGAATTTGAAATCTGAATGGAGTATACAGGGTTCATTC 60
consensus_6711#1      ------------------------------------------------------------
                                                                                  

consensus_6711#0      AGTGCGTATGAAAGTGAAATACTAATTAATTGGTTTCGAAGTTTACCTCAAAAACGTGAA 120
consensus_6711#1      ------------------------------------------------------------
                                                                                  

consensus_6711#0      GATTCCTCCTTATCATCATCGTCATCATCATCCTTATCATGGATTATATCTGGACCAATG 180
consensus_6711#1      ----------------------------------------------------------TC 2
                                                                                * 

consensus_6711#0      TCTTTGTTAGGCAATCTACGTTTAACATTACCAGCTTCTGCTCCTTATCCATCTACTCAA 240
consensus_6711#1      GGCACGAGGGGCAATCTACGTTTAACATTACCAGCTTCTGCTCCTTATCCATCTACTCAA 62
                           *   ***************************************************

consensus_6711#0      ATTGTTTCATTGAATGAGTCTGGATTTGCTTTTACAAATCATCCACATTATGAGAATACA 300
consensus_6711#1      ATTGTTTCATTGAATGAGTCTGGATTTGCTTTTACAAATCATCCACATTATGAGAATACA 122
                      ************************************************************

consensus_6711#0      GTACTTCGTTATAGAACTGTTTTAGCTTATGGGATTTATAGTCGTAAACCTGTTCATGAT 360
consensus_6711#1      GTACTTCGTTATAGAACTGTTTTAGCTTATGGGATTTATAGTCGTAAACCTGTTCATGAT 182
                      ************************************************************

consensus_6711#0      GTATGGCATACATATCGTCATATTTTAAAAACCGATTTTGTAATAGTGGAAACTCATACC 420
consensus_6711#1      GTATGGCATACATATCGTCATATTTTAAAAACCGATTTTGTAATAGTGGAAACTCATACC 242
                      ************************************************************

consensus_6711#0      TGTCCGTCTAGAGGTGGATGTAGTAAACCGGAACTTTTTGATCTACTCGATACAAATCTT 480
consensus_6711#1      TGTCCGTCTAGAGGTGGATGTAGTAAACCGGAACTTTTTGATCTACTCGATACAAATCTT 302
                      ************************************************************

consensus_6711#0      GCTGGACGCCCAGCACTATGTGAATCACTAATGAATATACAAGTTTTAAAAGCTGGTAGA 540
consensus_6711#1      GCTGGACGCCCAGCACTATGTGAATCACTAATGAATATACAAGTTTTAAAAGCTGGTAGA 362
                      ************************************************************

consensus_6711#0      ACTCCGAGTACTTTGGAACCATATTTTACAGTTGTTTATGTTGAGCTGTACACAGGTAGA 600
consensus_6711#1      ACTCCGAGTACTTTGGAACCATATTTTACAGTTGTTTATGTTGAGCTGTACACAGGTAGA 422
                      ************************************************************

consensus_6711#0      GTTGTACTATATGTGAATAAATTGACGTAATATATAAAAGAAGCAAGTAGGCTGCTTACA 660
consensus_6711#1      GTTGTACTATATGTGAATAAATTGACGTAATATATAAAAGAAGCAAGTAGGCTGCTTACA 482
                      ************************************************************

consensus_6711#0      GCTTTAAAGATTATGTACAGTGTCGCCATAAATGCAGGTTACCCAGATGCTTAATCATTT 720
consensus_6711#1      GCTTTAAAGATTATGTACAGTGTCGCCATAAATGCAGGTTACCCAGATGCTTAATCATTT 542
                      ************************************************************

consensus_6711#0      GTGATTACAATGTAAATCTCTTTGCAAACCGAGACTACTGTTCATTTCATTTTCAAAGTT 780
consensus_6711#1      GTGATTACAATGTAAATCTCTTNTGCAACCGAGACTACTGTTCATTTCATTNTCAAAGTT 602
                      **********************    ************************* ********

consensus_6711#0      TTATTAAATCTAATACTATCAAATGTTATGCATAGCATTTAAATAAAAGTTATTTG 836
consensus_6711#1      NTATTAAATCTAATACTATCAAATGTTATGCATAGCATTTAAATAAA-GTTATTT- 656
                       ********************************************** *******